Wall clock time and date at job start Tue Mar 31 2020 15:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29938 * 125.37946 * 2 1 4 4 C 1.36063 * 108.47676 * 179.97438 * 3 2 1 5 5 C 1.47425 * 126.44555 * 179.97438 * 4 3 2 6 6 O 1.21616 * 119.99620 * 180.02562 * 5 4 3 7 7 N 1.34772 * 120.00399 * 0.02679 * 5 4 3 8 8 C 1.46490 * 120.00227 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.88844 * 37.06518 * 8 7 5 10 10 C 1.54349 * 110.82559 * 273.54732 * 8 7 5 11 11 C 1.51368 * 105.25468 * 268.17112 * 10 8 7 12 12 C 1.38505 * 130.39030 * 162.78458 * 11 10 8 13 13 C 1.38101 * 120.21487 * 179.97438 * 12 11 10 14 14 C 1.38255 * 119.93640 * 0.02562 * 13 12 11 15 15 C 1.38101 * 119.93270 * 359.97438 * 14 13 12 16 16 C 1.38207 * 109.76303 * 342.76190 * 11 10 8 17 17 C 1.51372 * 109.75868 * 359.97438 * 16 11 10 18 18 H 1.09005 * 110.30436 * 136.11303 * 17 16 11 19 19 N 1.46493 * 110.30545 * 258.16911 * 17 16 11 20 20 C 1.36937 * 120.00068 * 273.54920 * 19 17 16 21 21 H 1.08004 * 119.99991 * 359.97438 * 20 19 17 22 22 C 1.38819 * 120.00320 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99549 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00154 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47151 * 60.00184 * 24 22 20 26 26 H 1.48505 * 109.46993 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47205 * 300.00152 * 24 22 20 28 28 C 1.36095 * 107.10552 * 0.23143 * 4 3 2 29 29 O 1.34052 * 125.38038 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47120 * 89.99944 * 1 2 3 31 31 H 1.09005 * 109.47018 * 209.99678 * 1 2 3 32 32 H 1.09004 * 109.47051 * 329.99899 * 1 2 3 33 33 H 0.96999 * 119.99476 * 0.02562 * 7 5 4 34 34 H 1.09002 * 110.30534 * 149.19604 * 10 8 7 35 35 H 1.08997 * 110.29932 * 27.14178 * 10 8 7 36 36 H 1.08004 * 119.89085 * 359.96003 * 12 11 10 37 37 H 1.07996 * 120.03561 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.03290 * 179.97438 * 14 13 12 39 39 H 1.08007 * 119.89341 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00197 * 93.54027 * 19 17 16 41 41 H 0.97005 * 119.99648 * 180.02562 * 23 22 20 42 42 H 1.07992 * 126.52470 * 179.77424 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5611 0.6638 0.0006 5 6 4.7439 1.5439 0.0003 6 8 5.8604 1.0618 0.0004 7 7 4.5879 2.8825 -0.0002 8 6 5.7631 3.7570 0.0001 9 1 6.5602 3.3369 -0.6133 10 6 6.2561 4.0133 1.4401 11 6 5.5480 5.2751 1.8848 12 6 5.3544 5.7960 3.1535 13 6 4.6667 6.9819 3.3203 14 6 4.1690 7.6518 2.2181 15 6 4.3610 7.1340 0.9523 16 6 5.0509 5.9451 0.7829 17 6 5.3914 5.1797 -0.4779 18 1 4.5277 5.1411 -1.1419 19 7 6.5282 5.8033 -1.1597 20 6 6.3186 6.8295 -2.0418 21 1 5.3151 7.1789 -2.2352 22 6 7.3959 7.4207 -2.6876 23 7 8.6188 6.9953 -2.4515 24 14 7.1098 8.8201 -3.8914 25 1 6.4484 9.9494 -3.1897 26 1 8.4124 9.2736 -4.4420 27 1 6.2412 8.3495 -5.0002 28 6 3.5659 -0.6971 -0.0043 29 8 2.2831 -1.0930 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.6973 3.2669 0.0001 34 1 7.3359 4.1622 1.4494 35 1 5.9844 3.1791 2.0869 36 1 5.7424 5.2729 4.0151 37 1 4.5170 7.3852 4.3109 38 1 3.6305 8.5791 2.3468 39 1 3.9715 7.6576 0.0917 40 1 7.4295 5.4893 -0.9862 41 1 9.3716 7.4087 -2.9024 42 1 4.4360 -1.3368 -0.0087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960258069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:13 Heat of formation + Delta-G solvation = 5.674574 kcal Electronic energy + Delta-G solvation = -27036.557136 eV Core-core repulsion = 23175.428479 eV Total energy + Delta-G solvation = -3861.128657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.46589 -41.57250 -40.17666 -37.56470 -36.03093 -35.73662 -33.99176 -33.10702 -32.76933 -31.34500 -29.41905 -28.66523 -27.73247 -25.82816 -24.80007 -23.32740 -22.53713 -21.93992 -21.52873 -21.32272 -19.44745 -19.19414 -17.96303 -17.64424 -17.41121 -17.09967 -16.51920 -16.33982 -15.96738 -15.68173 -15.44866 -15.27267 -15.03991 -14.85488 -14.71252 -14.25891 -14.19094 -13.96569 -13.88091 -13.26222 -13.13503 -13.00001 -12.81028 -12.67872 -12.36074 -12.33210 -12.26071 -12.04061 -11.90347 -11.87547 -11.67405 -11.41139 -11.00099 -10.35019 -9.99822 -9.63789 -9.42955 -9.09648 -7.96990 -5.27788 0.03672 0.54245 0.58428 0.93405 1.45988 1.49166 1.54740 1.56820 1.93991 2.15884 2.54311 2.86321 2.93961 3.34878 3.35316 3.67371 3.71243 3.78293 4.01497 4.08785 4.14894 4.25155 4.29890 4.41052 4.44201 4.52200 4.65012 4.68925 4.71261 4.74225 4.76657 4.85758 4.88048 4.93363 5.18924 5.24613 5.28714 5.36460 5.47684 5.63500 5.69329 5.87840 6.19501 6.23671 6.24956 6.55170 6.99654 7.29205 7.96451 8.23219 9.25760 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.003541 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.409273 B = 7905.708990 C = 8989.385196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.203 3.797 3 N -0.491 5.491 4 C -0.100 4.100 5 C 0.601 3.399 6 O -0.567 6.567 7 N -0.687 5.687 8 C 0.147 3.853 9 H 0.084 0.916 10 C -0.077 4.077 11 C -0.105 4.105 12 C -0.118 4.118 13 C -0.122 4.122 14 C -0.127 4.127 15 C -0.111 4.111 16 C -0.115 4.115 17 C 0.209 3.791 18 H 0.056 0.944 19 N -0.717 5.717 20 C -0.240 4.240 21 H 0.077 0.923 22 C -0.069 4.069 23 N -0.967 5.967 24 Si 0.973 3.027 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.277 1.277 28 C 0.029 3.971 29 O -0.194 6.194 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.413 0.587 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.109 0.891 40 H 0.375 0.625 41 H 0.252 0.748 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 -13.306 10.853 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.007 4.007 3 N -0.222 5.222 4 C -0.218 4.218 5 C 0.388 3.612 6 O -0.446 6.446 7 N -0.337 5.337 8 C 0.041 3.959 9 H 0.102 0.898 10 C -0.115 4.115 11 C -0.106 4.106 12 C -0.136 4.136 13 C -0.140 4.140 14 C -0.145 4.145 15 C -0.129 4.129 16 C -0.118 4.118 17 C 0.100 3.900 18 H 0.074 0.926 19 N -0.356 5.356 20 C -0.371 4.371 21 H 0.095 0.905 22 C -0.261 4.261 23 N -0.616 5.616 24 Si 0.801 3.199 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.203 1.203 28 C -0.045 4.045 29 O -0.081 6.081 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.250 0.750 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.154 0.846 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.127 0.873 40 H 0.208 0.792 41 H 0.061 0.939 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -17.716 -12.888 10.695 24.379 hybrid contribution 0.849 0.435 -0.883 1.300 sum -16.867 -12.453 9.811 23.148 Atomic orbital electron populations 1.20630 0.77487 1.06892 1.06475 1.27328 0.98154 0.77504 0.97680 1.70753 1.00637 1.31384 1.19429 1.21581 0.91815 0.93724 1.14720 1.17043 0.86667 0.81900 0.75629 1.90809 1.25562 1.75778 1.52483 1.45557 1.10164 1.04969 1.72995 1.21631 0.87979 0.89539 0.96756 0.89780 1.21292 0.99839 0.95170 0.95225 1.20629 0.98933 0.97051 0.94008 1.20849 1.00034 0.96993 0.95701 1.21303 0.98157 0.94885 0.99693 1.21305 1.00764 1.00541 0.91842 1.20772 0.99217 0.95007 0.97945 1.21484 0.97154 0.96430 0.96746 1.19910 0.91076 0.88745 0.90319 0.92579 1.42340 1.03943 1.40273 1.49001 1.19495 0.93203 1.08940 1.15508 0.90478 1.25551 0.95048 1.02721 1.02822 1.69818 0.98342 1.45763 1.47720 0.85233 0.76295 0.79373 0.78988 1.20266 1.22238 1.20280 1.25720 0.85675 0.94993 0.98132 1.84433 1.16429 1.37959 1.69231 0.87014 0.86692 0.87165 0.75005 0.90056 0.89985 0.84622 0.83046 0.83873 0.87291 0.79217 0.93927 0.72865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 71.23 0.75 0.35 16 2 C 0.20 3.56 8.30 88.39 0.73 4.30 16 3 N -0.49 -12.01 11.06 -293.03 -3.24 -15.25 16 4 C -0.10 -2.66 6.99 40.41 0.28 -2.38 16 5 C 0.60 19.59 7.81 86.66 0.68 20.27 16 6 O -0.57 -21.32 16.63 -4.08 -0.07 -21.38 16 7 N -0.69 -22.39 5.14 -441.03 -2.27 -24.66 16 8 C 0.15 5.47 2.95 46.00 0.14 5.61 16 9 H 0.08 3.56 7.63 -2.39 -0.02 3.54 16 10 C -0.08 -2.65 6.47 30.52 0.20 -2.45 16 11 C -0.11 -3.65 6.14 -19.60 -0.12 -3.77 16 12 C -0.12 -3.44 10.04 22.30 0.22 -3.22 16 13 C -0.12 -3.23 10.05 22.24 0.22 -3.01 16 14 C -0.13 -3.68 10.05 22.24 0.22 -3.46 16 15 C -0.11 -3.96 10.04 22.30 0.22 -3.74 16 16 C -0.12 -4.41 5.76 -19.60 -0.11 -4.52 16 17 C 0.21 8.69 3.11 45.01 0.14 8.83 16 18 H 0.06 2.35 8.02 -2.38 -0.02 2.34 16 19 N -0.72 -36.85 5.16 -322.84 -1.66 -38.51 16 20 C -0.24 -13.34 9.96 84.04 0.84 -12.50 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 22 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 23 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 24 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 C 0.03 0.58 11.95 67.32 0.80 1.39 16 29 O -0.19 -3.45 10.73 0.40 0.00 -3.45 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.41 12.59 8.31 -92.71 -0.77 11.82 16 34 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.08 2.60 8.09 -2.39 -0.02 2.58 16 36 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 39 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.38 20.88 7.79 -92.70 -0.72 20.16 16 41 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 42 H 0.26 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -74.07 367.11 0.34 -73.73 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: -0.42 Total: 42.35 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.69 Total: -1.79 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -6.89 Total: -137.80 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.06 Total: -24.83 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -74.07 0.34 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960258069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.406 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds