Wall clock time and date at job start Tue Mar 31 2020 15:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35325 * 128.03770 * 2 1 4 4 O 1.34015 * 106.66482 * 180.22060 * 3 2 1 5 5 N 1.20904 * 111.85190 * 359.76352 * 4 3 2 6 6 C 1.30990 * 111.43643 * 359.97438 * 5 4 3 7 7 C 1.48331 * 126.93909 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00112 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99992 * 0.03490 * 7 6 5 10 10 C 1.46497 * 120.00210 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.87875 * 31.48094 * 10 9 7 12 12 C 1.54345 * 110.82233 * 267.96718 * 10 9 7 13 13 C 1.51364 * 105.16894 * 268.12223 * 12 10 9 14 14 C 1.38499 * 130.39061 * 162.81085 * 13 12 10 15 15 C 1.38109 * 120.21350 * 179.97438 * 14 13 12 16 16 C 1.38248 * 119.93522 * 359.97438 * 15 14 13 17 17 C 1.38100 * 119.93875 * 0.02562 * 16 15 14 18 18 C 1.38214 * 109.76349 * 342.81002 * 13 12 10 19 19 C 1.51371 * 109.75596 * 359.97438 * 18 13 12 20 20 H 1.09003 * 110.38563 * 136.15104 * 19 18 13 21 21 N 1.46494 * 110.30868 * 258.26820 * 19 18 13 22 22 C 1.36945 * 119.99612 * 270.74883 * 21 19 18 23 23 H 1.07999 * 120.00077 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99637 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00227 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46819 * 59.99973 * 26 24 22 28 28 H 1.48494 * 109.47285 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47086 * 300.00269 * 26 24 22 30 30 H 1.08995 * 109.47536 * 270.15543 * 1 2 3 31 31 H 1.09002 * 109.46678 * 30.15496 * 1 2 3 32 32 H 1.08997 * 109.46856 * 150.14635 * 1 2 3 33 33 H 1.07999 * 126.66245 * 359.96615 * 3 2 1 34 34 H 0.97006 * 119.99659 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.30267 * 27.04306 * 12 10 9 36 36 H 1.09001 * 110.30448 * 149.10071 * 12 10 9 37 37 H 1.08003 * 119.89240 * 359.97438 * 14 13 12 38 38 H 1.08003 * 120.03084 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.03316 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.89757 * 180.02562 * 17 16 15 41 41 H 0.96995 * 120.00290 * 91.01774 * 21 19 18 42 42 H 0.97005 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5774 -0.0049 5 7 3.5989 -0.6316 -0.0032 6 6 2.3837 -1.1205 0.0036 7 6 1.9992 -2.5531 0.0071 8 8 0.8255 -2.8671 0.0130 9 7 2.9519 -3.5065 0.0039 10 6 2.5722 -4.9214 0.0079 11 1 1.6301 -5.0723 -0.5191 12 6 2.4865 -5.4624 1.4509 13 6 3.8613 -6.0225 1.7462 14 6 4.4600 -6.3417 2.9537 15 6 5.7445 -6.8483 2.9800 16 6 6.4356 -7.0382 1.7979 17 6 5.8404 -6.7205 0.5929 18 6 4.5527 -6.2115 0.5645 19 6 3.6896 -5.7918 -0.6061 20 1 4.2734 -5.2092 -1.3188 21 7 3.1154 -6.9689 -1.2623 22 6 3.7971 -7.5885 -2.2756 23 1 4.7577 -7.2091 -2.5912 24 6 3.2532 -8.7043 -2.8971 25 7 2.0823 -9.1664 -2.5128 26 14 4.1827 -9.5491 -4.2798 27 1 5.4963 -10.0238 -3.7754 28 1 3.3938 -10.7072 -4.7713 29 1 4.3973 -8.5881 -5.3914 30 1 -0.3634 0.0028 1.0276 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3633 -0.8913 -0.5115 33 1 2.0559 2.1075 -0.0005 34 1 3.8890 -3.2558 -0.0011 35 1 2.2502 -4.6550 2.1441 36 1 1.7342 -6.2484 1.5161 37 1 3.9205 -6.1940 3.8776 38 1 6.2084 -7.0966 3.9233 39 1 7.4404 -7.4338 1.8167 40 1 6.3808 -6.8696 -0.3302 41 1 2.2507 -7.3071 -0.9817 42 1 1.7021 -9.9459 -2.9474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960318570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:26 Heat of formation + Delta-G solvation = 69.530235 kcal Electronic energy + Delta-G solvation = -27217.289560 eV Core-core repulsion = 23358.929892 eV Total energy + Delta-G solvation = -3858.359668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.28638 -40.28812 -39.01283 -36.24208 -34.84412 -34.12990 -33.02066 -32.06116 -31.16767 -29.77630 -28.49596 -27.89970 -26.15003 -24.88338 -23.17247 -22.09925 -21.84091 -20.89654 -20.16822 -20.12823 -18.45660 -17.97359 -17.41700 -16.66139 -16.14811 -15.67434 -15.11104 -14.81101 -14.69686 -14.38407 -14.36217 -13.97312 -13.49392 -13.45346 -13.36346 -13.09624 -12.92875 -12.90516 -12.65852 -12.56808 -11.64127 -11.55947 -11.40262 -11.11254 -11.03675 -10.83433 -10.63725 -10.46823 -10.40004 -10.23368 -10.16385 -9.84325 -9.67546 -9.11757 -8.96428 -8.34147 -8.11060 -7.12012 -5.85721 -3.16377 0.97638 1.46950 1.81772 1.87287 2.81371 3.00916 3.12678 3.39920 3.44476 3.45280 3.80914 4.21294 4.39874 4.53881 4.63758 4.75107 4.86390 5.02649 5.20133 5.32881 5.40756 5.41993 5.44019 5.47982 5.49128 5.58235 5.60138 5.71399 5.88391 5.97042 6.03539 6.07288 6.15552 6.21084 6.32933 6.47036 6.58522 6.69547 6.87967 6.96136 7.20991 7.42530 7.47640 7.61111 7.82559 8.11882 8.30155 9.42371 9.92645 10.28745 11.35900 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003742 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.437889 B = 7481.541347 C = 8873.733670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.150 4.150 3 C -0.071 4.071 4 O 0.123 5.877 5 N -0.329 5.329 6 C -0.025 4.025 7 C 0.598 3.402 8 O -0.519 6.519 9 N -0.695 5.695 10 C 0.134 3.866 11 H 0.114 0.886 12 C -0.086 4.086 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.131 4.131 16 C -0.127 4.127 17 C -0.089 4.089 18 C -0.093 4.093 19 C 0.207 3.793 20 H 0.065 0.935 21 N -0.702 5.702 22 C -0.246 4.246 23 H 0.072 0.928 24 C -0.005 4.005 25 N -0.927 5.927 26 Si 0.909 3.091 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.223 0.777 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.388 0.612 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 18.984 9.316 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.154 4.154 3 C -0.152 4.152 4 O 0.047 5.953 5 N -0.030 5.030 6 C -0.185 4.185 7 C 0.381 3.619 8 O -0.393 6.393 9 N -0.346 5.346 10 C 0.029 3.971 11 H 0.132 0.868 12 C -0.124 4.124 13 C -0.099 4.099 14 C -0.132 4.132 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.108 4.108 18 C -0.097 4.097 19 C 0.096 3.904 20 H 0.083 0.917 21 N -0.341 5.341 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.202 4.202 25 N -0.574 5.574 26 Si 0.739 3.261 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.239 0.761 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.223 0.777 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.099 18.002 9.115 20.287 hybrid contribution 0.018 -0.485 -0.511 0.705 sum 2.118 17.517 8.603 19.631 Atomic orbital electron populations 1.20233 0.86516 1.04017 1.03216 1.21394 0.99185 0.90082 1.04781 1.25777 0.82440 1.01283 1.05691 1.84774 1.29475 1.15260 1.65746 1.74191 1.21656 0.91591 1.15523 1.23546 0.89485 0.97294 1.08155 1.16838 0.85739 0.82191 0.77106 1.90790 1.17311 1.81493 1.49697 1.45766 1.09667 1.06030 1.73111 1.22044 1.00723 0.78172 0.96185 0.86799 1.21411 0.94510 1.00178 0.96337 1.20502 0.96006 0.99841 0.93517 1.20475 0.95272 1.00951 0.96510 1.20850 0.94929 1.01438 0.97757 1.20969 0.99736 1.01186 0.92626 1.20613 0.94532 0.98093 0.97569 1.21712 0.93717 0.97415 0.96853 1.19822 0.90546 0.89349 0.90718 0.91746 1.42237 1.22305 1.30182 1.39423 1.19150 1.01641 1.07937 1.08986 0.91004 1.24761 0.97024 0.98447 0.99989 1.69652 1.17421 1.26139 1.44150 0.86249 0.78872 0.79007 0.81934 1.21116 1.21574 1.21088 0.90542 0.91056 0.89229 0.76092 0.75929 0.91070 0.89099 0.87161 0.86769 0.86671 0.86514 0.77709 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.15 -1.56 6.34 -104.11 -0.66 -2.22 16 3 C -0.07 -0.53 12.24 29.69 0.36 -0.17 16 4 O 0.12 1.24 11.18 17.25 0.19 1.43 16 5 N -0.33 -4.18 11.84 33.29 0.39 -3.79 16 6 C -0.03 -0.34 7.19 -82.52 -0.59 -0.93 16 7 C 0.60 9.39 7.85 -12.11 -0.10 9.30 16 8 O -0.52 -9.25 14.99 5.37 0.08 -9.17 16 9 N -0.70 -10.73 5.11 -53.22 -0.27 -11.00 16 10 C 0.13 2.33 3.03 -66.51 -0.20 2.13 16 11 H 0.11 2.21 7.48 -51.93 -0.39 1.82 16 12 C -0.09 -1.41 6.48 -26.85 -0.17 -1.59 16 13 C -0.10 -1.69 6.14 -104.21 -0.64 -2.33 16 14 C -0.11 -1.77 10.04 -39.53 -0.40 -2.17 16 15 C -0.13 -1.94 10.05 -39.63 -0.40 -2.34 16 16 C -0.13 -1.99 10.05 -39.63 -0.40 -2.39 16 17 C -0.09 -1.61 10.04 -39.54 -0.40 -2.00 16 18 C -0.09 -1.75 5.77 -104.21 -0.60 -2.35 16 19 C 0.21 4.10 3.13 -68.04 -0.21 3.89 16 20 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 21 N -0.70 -17.18 5.13 -53.53 -0.27 -17.46 16 22 C -0.25 -6.65 9.96 -15.06 -0.15 -6.80 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 25 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 26 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.01 6.89 -51.93 -0.36 0.65 16 33 H 0.22 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.41 5.82 8.42 -40.82 -0.34 5.47 16 35 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.39 10.15 7.82 -40.82 -0.32 9.83 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -32.16 363.58 -8.16 -40.33 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -5.17 Total: 14.51 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -4.29 Total: -10.59 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.57 Total: -59.04 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.27 Total: -7.74 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.16 -8.16 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960318570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.859 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds