Wall clock time and date at job start Tue Mar 31 2020 15:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35325 * 128.03770 * 2 1 4 4 O 1.34015 * 106.66482 * 180.22060 * 3 2 1 5 5 N 1.20904 * 111.85190 * 359.76352 * 4 3 2 6 6 C 1.30990 * 111.43643 * 359.97438 * 5 4 3 7 7 C 1.48331 * 126.93909 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00112 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99992 * 0.03490 * 7 6 5 10 10 C 1.46497 * 120.00210 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.87875 * 31.48094 * 10 9 7 12 12 C 1.54345 * 110.82233 * 267.96718 * 10 9 7 13 13 C 1.51364 * 105.16894 * 268.12223 * 12 10 9 14 14 C 1.38499 * 130.39061 * 162.81085 * 13 12 10 15 15 C 1.38109 * 120.21350 * 179.97438 * 14 13 12 16 16 C 1.38248 * 119.93522 * 359.97438 * 15 14 13 17 17 C 1.38100 * 119.93875 * 0.02562 * 16 15 14 18 18 C 1.38214 * 109.76349 * 342.81002 * 13 12 10 19 19 C 1.51371 * 109.75596 * 359.97438 * 18 13 12 20 20 H 1.09003 * 110.38563 * 136.15104 * 19 18 13 21 21 N 1.46494 * 110.30868 * 258.26820 * 19 18 13 22 22 C 1.36945 * 119.99612 * 270.74883 * 21 19 18 23 23 H 1.07999 * 120.00077 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99637 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00227 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46819 * 59.99973 * 26 24 22 28 28 H 1.48494 * 109.47285 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47086 * 300.00269 * 26 24 22 30 30 H 1.08995 * 109.47536 * 270.15543 * 1 2 3 31 31 H 1.09002 * 109.46678 * 30.15496 * 1 2 3 32 32 H 1.08997 * 109.46856 * 150.14635 * 1 2 3 33 33 H 1.07999 * 126.66245 * 359.96615 * 3 2 1 34 34 H 0.97006 * 119.99659 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.30267 * 27.04306 * 12 10 9 36 36 H 1.09001 * 110.30448 * 149.10071 * 12 10 9 37 37 H 1.08003 * 119.89240 * 359.97438 * 14 13 12 38 38 H 1.08003 * 120.03084 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.03316 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.89757 * 180.02562 * 17 16 15 41 41 H 0.96995 * 120.00290 * 91.01774 * 21 19 18 42 42 H 0.97005 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5774 -0.0049 5 7 3.5989 -0.6316 -0.0032 6 6 2.3837 -1.1205 0.0036 7 6 1.9992 -2.5531 0.0071 8 8 0.8255 -2.8671 0.0130 9 7 2.9519 -3.5065 0.0039 10 6 2.5722 -4.9214 0.0079 11 1 1.6301 -5.0723 -0.5191 12 6 2.4865 -5.4624 1.4509 13 6 3.8613 -6.0225 1.7462 14 6 4.4600 -6.3417 2.9537 15 6 5.7445 -6.8483 2.9800 16 6 6.4356 -7.0382 1.7979 17 6 5.8404 -6.7205 0.5929 18 6 4.5527 -6.2115 0.5645 19 6 3.6896 -5.7918 -0.6061 20 1 4.2734 -5.2092 -1.3188 21 7 3.1154 -6.9689 -1.2623 22 6 3.7971 -7.5885 -2.2756 23 1 4.7577 -7.2091 -2.5912 24 6 3.2532 -8.7043 -2.8971 25 7 2.0823 -9.1664 -2.5128 26 14 4.1827 -9.5491 -4.2798 27 1 5.4963 -10.0238 -3.7754 28 1 3.3938 -10.7072 -4.7713 29 1 4.3973 -8.5881 -5.3914 30 1 -0.3634 0.0028 1.0276 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3633 -0.8913 -0.5115 33 1 2.0559 2.1075 -0.0005 34 1 3.8890 -3.2558 -0.0011 35 1 2.2502 -4.6550 2.1441 36 1 1.7342 -6.2484 1.5161 37 1 3.9205 -6.1940 3.8776 38 1 6.2084 -7.0966 3.9233 39 1 7.4404 -7.4338 1.8167 40 1 6.3808 -6.8696 -0.3302 41 1 2.2507 -7.3071 -0.9817 42 1 1.7021 -9.9459 -2.9474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960318570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:25 Heat of formation + Delta-G solvation = 48.646136 kcal Electronic energy + Delta-G solvation = -27218.195162 eV Core-core repulsion = 23358.929892 eV Total energy + Delta-G solvation = -3859.265271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.15926 -41.65631 -40.30443 -37.63978 -35.88168 -35.67808 -34.34068 -33.14986 -32.78316 -31.37647 -29.49539 -28.97307 -27.76259 -26.12801 -24.96415 -23.35663 -22.67456 -22.09578 -21.59563 -21.42207 -19.57870 -19.24186 -18.85774 -17.79423 -17.43518 -17.12676 -16.55296 -16.39479 -15.98991 -15.71104 -15.49731 -15.32920 -15.09214 -14.78000 -14.29707 -14.27770 -14.21093 -14.09036 -13.99209 -13.33610 -13.15811 -12.99954 -12.83255 -12.69054 -12.40726 -12.36778 -12.27985 -12.09253 -11.89949 -11.70822 -11.43801 -11.38596 -11.03338 -10.41234 -10.36272 -9.66762 -9.46392 -9.12189 -7.99216 -5.30277 0.04334 0.51049 0.55421 0.72013 1.44489 1.47522 1.53350 1.69867 1.96516 2.27891 2.52063 2.82897 2.91035 3.32118 3.33004 3.55338 3.66476 3.87951 3.97922 4.04707 4.08298 4.12250 4.22407 4.27328 4.39264 4.43738 4.62025 4.68195 4.72970 4.79242 4.82270 4.83804 4.90097 4.95394 5.15506 5.22760 5.29290 5.36932 5.44862 5.60728 5.66693 5.84455 6.16623 6.20086 6.21168 6.83454 7.05327 7.26993 7.93713 8.20592 9.23382 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003742 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.437889 B = 7481.541347 C = 8873.733670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.172 4.172 3 C -0.033 4.033 4 O 0.135 5.865 5 N -0.349 5.349 6 C -0.057 4.057 7 C 0.596 3.404 8 O -0.548 6.548 9 N -0.690 5.690 10 C 0.146 3.854 11 H 0.088 0.912 12 C -0.078 4.078 13 C -0.106 4.106 14 C -0.117 4.117 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.111 4.111 18 C -0.117 4.117 19 C 0.208 3.792 20 H 0.056 0.944 21 N -0.716 5.716 22 C -0.243 4.243 23 H 0.076 0.924 24 C -0.067 4.067 25 N -0.966 5.966 26 Si 0.972 3.028 27 H -0.277 1.277 28 H -0.295 1.295 29 H -0.277 1.277 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.280 0.720 34 H 0.411 0.589 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.108 0.892 41 H 0.376 0.624 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 21.267 10.933 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.178 4.178 3 C -0.113 4.113 4 O 0.056 5.944 5 N -0.048 5.048 6 C -0.214 4.214 7 C 0.381 3.619 8 O -0.424 6.424 9 N -0.341 5.341 10 C 0.040 3.960 11 H 0.106 0.894 12 C -0.116 4.116 13 C -0.107 4.107 14 C -0.135 4.135 15 C -0.140 4.140 16 C -0.144 4.144 17 C -0.130 4.130 18 C -0.120 4.120 19 C 0.098 3.902 20 H 0.074 0.926 21 N -0.355 5.355 22 C -0.374 4.374 23 H 0.094 0.906 24 C -0.260 4.260 25 N -0.615 5.615 26 Si 0.801 3.199 27 H -0.203 1.203 28 H -0.221 1.221 29 H -0.203 1.203 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.295 0.705 34 H 0.247 0.753 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.155 0.845 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.126 0.874 41 H 0.208 0.792 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.746 20.310 10.754 23.285 hybrid contribution -0.407 -1.005 -0.925 1.425 sum 3.339 19.305 9.828 21.919 Atomic orbital electron populations 1.20226 0.85747 1.04029 1.03580 1.21696 1.00003 0.89911 1.06176 1.26712 0.80281 1.02679 1.01673 1.84742 1.30882 1.14198 1.64534 1.74199 1.21500 0.92804 1.16267 1.23383 0.90914 0.96407 1.10740 1.17206 0.85220 0.83346 0.76125 1.90767 1.18389 1.82286 1.50981 1.45646 1.10052 1.05182 1.73247 1.21657 0.98570 0.79201 0.96593 0.89428 1.21306 0.94415 1.00261 0.95593 1.20624 0.95832 1.00279 0.93926 1.20860 0.95857 1.00025 0.96714 1.21318 0.94345 0.99369 0.98967 1.21309 1.00959 1.00260 0.91917 1.20769 0.94529 0.99092 0.98602 1.21489 0.94553 0.99382 0.96556 1.19885 0.91234 0.88007 0.91077 0.92600 1.42324 1.22014 1.31291 1.39849 1.19496 1.01464 1.07521 1.08947 0.90578 1.25543 0.98054 0.99634 1.02737 1.69813 1.19171 1.26733 1.45801 0.85237 0.77688 0.77713 0.79273 1.20278 1.22108 1.20333 0.90045 0.87682 0.92490 0.70493 0.75278 0.89749 0.89812 0.84464 0.82983 0.83889 0.87380 0.79172 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.01 71.24 0.71 -0.59 16 2 C -0.17 -3.31 6.34 -19.53 -0.12 -3.43 16 3 C -0.03 -0.37 12.24 67.15 0.82 0.45 16 4 O 0.14 2.37 11.18 71.89 0.80 3.18 16 5 N -0.35 -8.58 11.84 -49.51 -0.59 -9.17 16 6 C -0.06 -1.53 7.19 42.96 0.31 -1.22 16 7 C 0.60 19.57 7.85 86.93 0.68 20.25 16 8 O -0.55 -20.72 14.99 -3.71 -0.06 -20.78 16 9 N -0.69 -22.36 5.11 -440.57 -2.25 -24.61 16 10 C 0.15 5.38 3.03 45.91 0.14 5.52 16 11 H 0.09 3.70 7.48 -2.39 -0.02 3.68 16 12 C -0.08 -2.61 6.48 30.52 0.20 -2.41 16 13 C -0.11 -3.61 6.14 -19.60 -0.12 -3.73 16 14 C -0.12 -3.35 10.04 22.30 0.22 -3.13 16 15 C -0.12 -3.19 10.05 22.24 0.22 -2.97 16 16 C -0.13 -3.68 10.05 22.24 0.22 -3.46 16 17 C -0.11 -3.99 10.04 22.30 0.22 -3.76 16 18 C -0.12 -4.46 5.77 -19.59 -0.11 -4.57 16 19 C 0.21 8.64 3.13 44.92 0.14 8.78 16 20 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16 21 N -0.72 -36.83 5.13 -323.27 -1.66 -38.49 16 22 C -0.24 -13.54 9.96 84.03 0.84 -12.70 16 23 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 25 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 26 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 29 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.33 6.89 -2.39 -0.02 1.31 16 33 H 0.28 -0.41 8.06 -2.91 -0.02 -0.44 16 34 H 0.41 12.32 8.42 -92.70 -0.78 11.54 16 35 H 0.08 2.58 8.09 -2.39 -0.02 2.56 16 36 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 41 H 0.38 20.87 7.82 -92.71 -0.73 20.14 16 42 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -73.77 363.58 2.98 -70.79 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.43 Total: 40.26 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 4.84 Total: -10.36 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -4.21 Total: -131.49 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.75 Total: -17.60 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -73.77 2.98 -70.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960318570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.432 kcal (2) G-P(sol) polarization free energy of solvation -73.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds