Wall clock time and date at job start Tue Mar 31 2020 15:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30017 * 124.83502 * 2 1 4 4 C 1.35852 * 108.85311 * 179.97438 * 3 2 1 5 5 C 1.39839 * 133.62536 * 180.02562 * 4 3 2 6 6 C 1.36287 * 120.03767 * 179.97438 * 5 4 3 7 7 C 1.40091 * 120.41813 * 0.02562 * 6 5 4 8 8 C 1.47623 * 119.93106 * 179.97438 * 7 6 5 9 9 O 1.21584 * 120.00403 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99757 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00005 * 180.02562 * 10 8 7 12 12 H 1.09003 * 115.51704 * 350.40652 * 11 10 8 13 13 C 1.52999 * 117.44139 * 205.00280 * 11 10 8 14 14 H 1.08999 * 119.54425 * 4.11001 * 13 11 10 15 15 C 1.54389 * 118.12394 * 159.21134 * 13 11 10 16 16 N 1.51826 * 102.87040 * 88.01636 * 15 13 11 17 17 C 1.36935 * 127.61428 * 140.54201 * 16 15 13 18 18 H 1.07998 * 119.99900 * 194.64860 * 17 16 15 19 19 C 1.38810 * 119.99804 * 14.65498 * 17 16 15 20 20 N 1.31619 * 119.99940 * 9.01391 * 19 17 16 21 21 Si 1.86796 * 119.99904 * 189.01040 * 19 17 16 22 22 H 1.48505 * 109.47219 * 60.00329 * 21 19 17 23 23 H 1.48503 * 109.47362 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47476 * 300.00277 * 21 19 17 25 25 C 1.48153 * 104.54960 * 320.27040 * 16 15 13 26 26 C 1.52993 * 117.44426 * 135.76088 * 11 10 8 27 27 H 1.08997 * 119.54087 * 355.87614 * 26 11 10 28 28 C 1.39441 * 120.14418 * 359.97438 * 7 6 5 29 29 C 1.38279 * 119.61745 * 359.97438 * 28 7 6 30 30 O 1.34138 * 124.84425 * 179.70144 * 2 1 3 31 31 H 1.08997 * 109.47065 * 90.02404 * 1 2 3 32 32 H 1.09003 * 109.46889 * 210.02261 * 1 2 3 33 33 H 1.08994 * 109.47374 * 330.02003 * 1 2 3 34 34 H 1.07995 * 119.98221 * 359.97329 * 5 4 3 35 35 H 1.07997 * 119.79462 * 180.02562 * 6 5 4 36 36 H 0.96998 * 120.00263 * 359.97438 * 10 8 7 37 37 H 1.09000 * 110.40545 * 205.97228 * 15 13 11 38 38 H 1.08997 * 110.40335 * 328.40033 * 15 13 11 39 39 H 0.97001 * 119.99754 * 179.97438 * 20 19 17 40 40 H 1.08994 * 110.40696 * 281.08009 * 25 16 15 41 41 H 1.09000 * 110.40939 * 158.64204 * 25 16 15 42 42 H 1.08001 * 120.18788 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2497 1.0672 0.0000 4 6 3.5557 0.6931 0.0006 5 6 4.7619 1.4006 0.0013 6 6 5.9473 0.7281 0.0023 7 6 5.9681 -0.6727 0.0021 8 6 7.2582 -1.3902 0.0026 9 8 7.2777 -2.6059 0.0019 10 7 8.4144 -0.6977 0.0027 11 6 9.6947 -1.4098 0.0027 12 1 9.6337 -2.4857 0.1664 13 6 10.9090 -0.6771 0.5767 14 1 10.7800 0.3084 1.0243 15 6 12.1162 -1.5208 1.0397 16 7 12.9408 -1.6555 -0.2281 17 6 14.3040 -1.6053 -0.3477 18 1 14.7563 -1.4783 -1.3201 19 6 15.1043 -1.7177 0.7808 20 7 14.5691 -2.0486 1.9369 21 14 16.9409 -1.3996 0.6588 22 1 17.1725 -0.0089 0.1919 23 1 17.5650 -1.5833 1.9938 24 1 17.5455 -2.3528 -0.3062 25 6 11.9411 -1.8595 -1.3023 26 6 10.7838 -0.9022 -0.9444 27 1 10.5615 -0.0845 -1.6300 28 6 4.7727 -1.3907 0.0013 29 6 3.5679 -0.7121 0.0014 30 8 2.2734 -1.1009 0.0057 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8901 0.5135 34 1 4.7542 2.4805 0.0010 35 1 6.8765 1.2784 0.0032 36 1 8.3989 0.2721 0.0021 37 1 12.6792 -0.9897 1.8072 38 1 11.7824 -2.4888 1.4134 39 1 15.1284 -2.1276 2.7254 40 1 11.5927 -2.8923 -1.3060 41 1 12.3656 -1.5971 -2.2714 42 1 4.7879 -2.4706 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960411195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:37 Heat of formation + Delta-G solvation = 73.374458 kcal Electronic energy + Delta-G solvation = -25925.232996 eV Core-core repulsion = 22067.040026 eV Total energy + Delta-G solvation = -3858.192970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.70648 -40.23559 -38.62457 -37.60693 -35.26775 -34.51610 -32.84741 -32.02429 -31.18139 -30.27892 -28.65521 -27.15768 -25.69649 -24.05796 -23.56085 -22.09840 -21.75631 -20.79592 -20.33503 -19.24900 -18.54161 -17.95460 -17.30889 -17.05311 -16.72213 -16.12569 -15.28203 -14.92716 -14.69388 -14.57396 -14.27760 -14.14316 -13.78900 -13.70815 -13.56281 -13.26416 -12.95252 -12.82369 -12.75041 -12.21566 -11.96295 -11.72556 -11.48882 -11.47545 -11.02273 -10.93657 -10.81732 -10.47522 -10.25653 -10.19469 -10.06793 -9.68346 -9.33104 -9.24073 -8.90890 -8.74852 -8.38621 -6.88809 -5.79173 -3.12416 -0.02571 0.74898 1.75652 1.95140 2.66371 2.98668 3.28756 3.39341 3.40951 3.43795 3.44922 4.03134 4.28209 4.37330 4.46847 4.47913 4.49042 4.62499 4.77137 4.88193 4.90876 5.07640 5.11945 5.31601 5.34952 5.46790 5.49514 5.54628 5.68120 5.74627 5.78207 5.81503 5.87019 6.07244 6.09140 6.17338 6.50270 6.67796 6.72662 6.87297 7.12992 7.28662 7.44077 7.50471 7.68945 8.11029 8.14164 9.05967 9.72628 10.48989 11.35750 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.046034 B = 0.001909 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.094922 B =14661.633411 C =14828.423298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.255 3.745 3 N -0.484 5.484 4 C 0.045 3.955 5 C -0.067 4.067 6 C -0.087 4.087 7 C -0.106 4.106 8 C 0.563 3.437 9 O -0.530 6.530 10 N -0.688 5.688 11 C 0.093 3.907 12 H 0.134 0.866 13 C -0.176 4.176 14 H 0.103 0.897 15 C 0.185 3.815 16 N -0.598 5.598 17 C -0.225 4.225 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.158 3.842 26 C -0.181 4.181 27 H 0.104 0.896 28 C -0.025 4.025 29 C -0.002 4.002 30 O -0.209 6.209 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.399 0.601 37 H 0.093 0.907 38 H 0.033 0.967 39 H 0.255 0.745 40 H 0.027 0.973 41 H 0.052 0.948 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.440 7.321 -3.426 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.044 3.956 3 N -0.215 5.215 4 C -0.068 4.068 5 C -0.086 4.086 6 C -0.107 4.107 7 C -0.110 4.110 8 C 0.350 3.650 9 O -0.407 6.407 10 N -0.337 5.337 11 C -0.012 4.012 12 H 0.152 0.848 13 C -0.197 4.197 14 H 0.121 0.879 15 C 0.060 3.940 16 N -0.323 5.323 17 C -0.354 4.354 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.564 5.564 21 Si 0.743 3.257 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.031 3.969 26 C -0.202 4.202 27 H 0.122 0.878 28 C -0.045 4.045 29 C -0.052 4.052 30 O -0.100 6.100 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.234 0.766 37 H 0.111 0.889 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -27.369 7.018 -3.286 28.445 hybrid contribution 1.115 0.138 -0.037 1.124 sum -26.254 7.156 -3.323 27.414 Atomic orbital electron populations 1.20474 0.80582 1.05841 1.05421 1.26622 0.96795 0.78239 0.93905 1.70646 1.00885 1.28904 1.21041 1.20045 0.92307 0.91236 1.03205 1.19949 0.88220 1.00635 0.99820 1.20923 0.98453 0.92819 0.98462 1.19709 0.92852 0.93482 1.04924 1.17861 0.83232 0.87097 0.76831 1.90813 1.87322 1.13164 1.49372 1.45266 1.04907 1.09832 1.73706 1.21937 0.77953 0.97193 1.04119 0.84835 1.24610 0.96636 1.01520 0.96978 0.87925 1.21717 0.86323 0.95644 0.90305 1.46060 1.01025 1.83729 1.01469 1.18966 0.79399 1.42994 0.94001 0.90563 1.24868 0.98137 1.01208 0.96150 1.69868 1.34510 1.52456 0.99519 0.86192 0.84680 0.78127 0.76696 1.21150 1.21568 1.21020 1.21066 0.88118 0.94664 0.93012 1.24402 0.98619 1.03360 0.93862 0.87810 1.19890 0.86093 1.01297 0.97196 1.20052 0.83804 0.94340 1.07040 1.84503 1.15200 1.36112 1.74197 0.88065 0.88621 0.87460 0.83899 0.84019 0.76566 0.88885 0.94920 0.93505 0.95559 0.92947 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.51 36.01 0.38 0.17 16 2 C 0.25 2.20 8.23 -13.04 -0.11 2.09 16 3 N -0.48 -5.24 11.33 -8.63 -0.10 -5.33 16 4 C 0.04 0.50 7.24 -84.62 -0.61 -0.11 16 5 C -0.07 -0.61 10.03 -39.69 -0.40 -1.01 16 6 C -0.09 -0.76 9.46 -39.59 -0.37 -1.13 16 7 C -0.11 -1.20 5.88 -104.92 -0.62 -1.82 16 8 C 0.56 7.87 7.76 -12.43 -0.10 7.78 16 9 O -0.53 -9.38 15.89 5.29 0.08 -9.29 16 10 N -0.69 -8.90 5.51 -54.82 -0.30 -9.21 16 11 C 0.09 1.53 5.97 -67.93 -0.41 1.12 16 12 H 0.13 2.48 7.40 -51.93 -0.38 2.10 16 13 C -0.18 -3.20 6.96 -89.22 -0.62 -3.82 16 14 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 15 C 0.18 4.35 5.92 -0.29 0.00 4.35 16 16 N -0.60 -15.17 3.45 -165.70 -0.57 -15.74 16 17 C -0.23 -6.23 10.36 -15.06 -0.16 -6.39 16 18 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 19 C -0.01 -0.19 5.42 -17.43 -0.09 -0.28 16 20 N -0.92 -26.65 10.82 55.49 0.60 -26.05 16 21 Si 0.91 21.82 29.56 -169.99 -5.03 16.79 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.16 3.30 7.05 -2.40 -0.02 3.28 16 26 C -0.18 -3.13 7.06 -89.22 -0.63 -3.76 16 27 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 28 C -0.03 -0.29 9.60 -39.12 -0.38 -0.67 16 29 C 0.00 -0.03 7.42 -38.70 -0.29 -0.31 16 30 O -0.21 -2.19 10.77 3.74 0.04 -2.15 16 31 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.14 0.85 6.36 -52.49 -0.33 0.52 16 36 H 0.40 3.88 6.83 -40.82 -0.28 3.61 16 37 H 0.09 2.43 6.56 -51.93 -0.34 2.09 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.15 1.73 7.63 -52.49 -0.40 1.32 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -34.40 357.68 -9.39 -43.79 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.09 Total: 2.33 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -4.42 Total: -0.52 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.37 Total: -56.34 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.12 Total: -11.44 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.40 -9.39 -43.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960411195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.166 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds