Wall clock time and date at job start Tue Mar 31 2020 15:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30017 * 124.83502 * 2 1 4 4 C 1.35852 * 108.85311 * 179.97438 * 3 2 1 5 5 C 1.39839 * 133.62536 * 180.02562 * 4 3 2 6 6 C 1.36287 * 120.03767 * 179.97438 * 5 4 3 7 7 C 1.40091 * 120.41813 * 0.02562 * 6 5 4 8 8 C 1.47623 * 119.93106 * 179.97438 * 7 6 5 9 9 O 1.21584 * 120.00403 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99757 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00005 * 180.02562 * 10 8 7 12 12 H 1.09003 * 115.51704 * 350.40652 * 11 10 8 13 13 C 1.52999 * 117.44139 * 205.00280 * 11 10 8 14 14 H 1.08999 * 119.54425 * 4.11001 * 13 11 10 15 15 C 1.54389 * 118.12394 * 159.21134 * 13 11 10 16 16 N 1.51826 * 102.87040 * 88.01636 * 15 13 11 17 17 C 1.36935 * 127.61428 * 140.54201 * 16 15 13 18 18 H 1.07998 * 119.99900 * 194.64860 * 17 16 15 19 19 C 1.38810 * 119.99804 * 14.65498 * 17 16 15 20 20 N 1.31619 * 119.99940 * 9.01391 * 19 17 16 21 21 Si 1.86796 * 119.99904 * 189.01040 * 19 17 16 22 22 H 1.48505 * 109.47219 * 60.00329 * 21 19 17 23 23 H 1.48503 * 109.47362 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47476 * 300.00277 * 21 19 17 25 25 C 1.48153 * 104.54960 * 320.27040 * 16 15 13 26 26 C 1.52993 * 117.44426 * 135.76088 * 11 10 8 27 27 H 1.08997 * 119.54087 * 355.87614 * 26 11 10 28 28 C 1.39441 * 120.14418 * 359.97438 * 7 6 5 29 29 C 1.38279 * 119.61745 * 359.97438 * 28 7 6 30 30 O 1.34138 * 124.84425 * 179.70144 * 2 1 3 31 31 H 1.08997 * 109.47065 * 90.02404 * 1 2 3 32 32 H 1.09003 * 109.46889 * 210.02261 * 1 2 3 33 33 H 1.08994 * 109.47374 * 330.02003 * 1 2 3 34 34 H 1.07995 * 119.98221 * 359.97329 * 5 4 3 35 35 H 1.07997 * 119.79462 * 180.02562 * 6 5 4 36 36 H 0.96998 * 120.00263 * 359.97438 * 10 8 7 37 37 H 1.09000 * 110.40545 * 205.97228 * 15 13 11 38 38 H 1.08997 * 110.40335 * 328.40033 * 15 13 11 39 39 H 0.97001 * 119.99754 * 179.97438 * 20 19 17 40 40 H 1.08994 * 110.40696 * 281.08009 * 25 16 15 41 41 H 1.09000 * 110.40939 * 158.64204 * 25 16 15 42 42 H 1.08001 * 120.18788 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2497 1.0672 0.0000 4 6 3.5557 0.6931 0.0006 5 6 4.7619 1.4006 0.0013 6 6 5.9473 0.7281 0.0023 7 6 5.9681 -0.6727 0.0021 8 6 7.2582 -1.3902 0.0026 9 8 7.2777 -2.6059 0.0019 10 7 8.4144 -0.6977 0.0027 11 6 9.6947 -1.4098 0.0027 12 1 9.6337 -2.4857 0.1664 13 6 10.9090 -0.6771 0.5767 14 1 10.7800 0.3084 1.0243 15 6 12.1162 -1.5208 1.0397 16 7 12.9408 -1.6555 -0.2281 17 6 14.3040 -1.6053 -0.3477 18 1 14.7563 -1.4783 -1.3201 19 6 15.1043 -1.7177 0.7808 20 7 14.5691 -2.0486 1.9369 21 14 16.9409 -1.3996 0.6588 22 1 17.1725 -0.0089 0.1919 23 1 17.5650 -1.5833 1.9938 24 1 17.5455 -2.3528 -0.3062 25 6 11.9411 -1.8595 -1.3023 26 6 10.7838 -0.9022 -0.9444 27 1 10.5615 -0.0845 -1.6300 28 6 4.7727 -1.3907 0.0013 29 6 3.5679 -0.7121 0.0014 30 8 2.2734 -1.1009 0.0057 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8901 0.5135 34 1 4.7542 2.4805 0.0010 35 1 6.8765 1.2784 0.0032 36 1 8.3989 0.2721 0.0021 37 1 12.6792 -0.9897 1.8072 38 1 11.7824 -2.4888 1.4134 39 1 15.1284 -2.1276 2.7254 40 1 11.5927 -2.8923 -1.3060 41 1 12.3656 -1.5971 -2.2714 42 1 4.7879 -2.4706 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960411195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:36 Heat of formation + Delta-G solvation = 48.665315 kcal Electronic energy + Delta-G solvation = -25926.304465 eV Core-core repulsion = 22067.040026 eV Total energy + Delta-G solvation = -3859.264439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.43799 -41.38772 -39.98851 -38.60216 -36.06297 -36.00143 -34.45474 -32.79649 -31.97507 -31.91068 -29.42179 -28.88733 -27.52419 -25.02046 -24.40589 -23.25434 -22.81323 -22.01566 -21.72490 -20.79532 -19.49238 -18.84672 -18.70641 -18.04184 -17.98470 -17.20357 -16.71524 -16.25424 -16.06658 -15.50862 -15.31222 -15.14395 -14.88318 -14.79325 -14.59979 -14.25826 -14.10102 -13.72871 -13.59563 -13.31649 -13.28813 -13.22511 -12.90164 -12.72023 -12.67145 -12.35238 -12.16958 -12.04918 -11.85057 -11.71053 -11.63078 -11.28823 -10.83631 -10.69710 -10.08541 -9.85934 -9.55838 -8.91743 -7.89407 -5.24752 -0.82455 0.00330 0.97726 1.23546 1.48215 1.51120 1.57757 1.71829 1.88861 2.49852 2.52731 2.70970 2.88770 3.27677 3.30169 3.43919 3.57339 3.79846 3.82565 3.85613 3.88572 3.93420 4.14300 4.19496 4.39028 4.50958 4.55979 4.61176 4.64378 4.73387 4.81292 4.87012 4.90318 4.99640 5.00868 5.06585 5.17336 5.28313 5.35895 5.41642 5.45362 5.52160 5.66444 6.14110 6.39509 6.41535 6.97085 7.05005 7.66939 8.46558 9.24859 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.046034 B = 0.001909 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.094922 B =14661.633411 C =14828.423298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.263 3.737 3 N -0.512 5.512 4 C 0.035 3.965 5 C -0.067 4.067 6 C -0.070 4.070 7 C -0.116 4.116 8 C 0.566 3.434 9 O -0.574 6.574 10 N -0.671 5.671 11 C 0.114 3.886 12 H 0.107 0.893 13 C -0.174 4.174 14 H 0.131 0.869 15 C 0.185 3.815 16 N -0.622 5.622 17 C -0.239 4.239 18 H 0.082 0.918 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.277 1.277 25 C 0.150 3.850 26 C -0.163 4.163 27 H 0.140 0.860 28 C -0.033 4.033 29 C -0.025 4.025 30 O -0.220 6.220 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.419 0.581 37 H 0.062 0.938 38 H 0.005 0.995 39 H 0.249 0.751 40 H 0.016 0.984 41 H 0.064 0.936 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.013 9.899 -4.548 30.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.053 3.947 3 N -0.243 5.243 4 C -0.077 4.077 5 C -0.086 4.086 6 C -0.090 4.090 7 C -0.119 4.119 8 C 0.355 3.645 9 O -0.454 6.454 10 N -0.321 5.321 11 C 0.007 3.993 12 H 0.125 0.875 13 C -0.194 4.194 14 H 0.149 0.851 15 C 0.061 3.939 16 N -0.348 5.348 17 C -0.367 4.367 18 H 0.100 0.900 19 C -0.258 4.258 20 N -0.597 5.597 21 Si 0.808 3.192 22 H -0.201 1.201 23 H -0.221 1.221 24 H -0.203 1.203 25 C 0.024 3.976 26 C -0.184 4.184 27 H 0.157 0.843 28 C -0.053 4.053 29 C -0.074 4.074 30 O -0.112 6.112 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.187 0.813 35 H 0.194 0.806 36 H 0.259 0.741 37 H 0.081 0.919 38 H 0.023 0.977 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.082 0.918 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -28.978 9.641 -4.437 30.860 hybrid contribution 1.441 -0.732 0.286 1.641 sum -27.536 8.909 -4.151 29.238 Atomic orbital electron populations 1.20841 0.76903 1.07411 1.07133 1.27778 0.98441 0.77302 0.91164 1.70689 1.00894 1.29746 1.22969 1.20488 0.93310 0.91258 1.02683 1.20289 0.87415 1.01902 0.98979 1.21200 0.99838 0.91454 0.96500 1.19471 0.91050 0.94529 1.06881 1.18223 0.84099 0.86613 0.75572 1.90800 1.87935 1.15299 1.51401 1.44984 1.03234 1.10708 1.73212 1.21446 0.78998 0.96118 1.02749 0.87469 1.24296 0.95641 1.01848 0.97648 0.85138 1.21463 0.88068 0.94848 0.89530 1.46385 1.01235 1.84036 1.03132 1.19371 0.80932 1.42146 0.94299 0.90015 1.25711 1.02488 1.01649 0.95903 1.70073 1.35717 1.53913 0.99994 0.85131 0.79418 0.78319 0.76308 1.20106 1.22114 1.20320 1.21207 0.88668 0.95185 0.92511 1.24307 0.97451 1.03024 0.93633 0.84265 1.19867 0.86740 1.01023 0.97684 1.20120 0.84112 0.94815 1.08401 1.84510 1.15113 1.37113 1.74507 0.86010 0.86765 0.86057 0.81279 0.80642 0.74119 0.91927 0.97721 0.94153 0.96584 0.91805 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.51 71.24 0.75 0.50 16 2 C 0.26 4.15 8.23 88.38 0.73 4.88 16 3 N -0.51 -10.32 11.33 -296.04 -3.35 -13.67 16 4 C 0.03 0.73 7.24 39.47 0.29 1.02 16 5 C -0.07 -1.04 10.03 22.20 0.22 -0.82 16 6 C -0.07 -1.02 9.46 22.26 0.21 -0.81 16 7 C -0.12 -2.47 5.88 -20.06 -0.12 -2.59 16 8 C 0.57 15.28 7.76 86.72 0.67 15.96 16 9 O -0.57 -20.71 15.89 -3.98 -0.06 -20.77 16 10 N -0.67 -15.74 5.51 -445.62 -2.46 -18.20 16 11 C 0.11 3.58 5.97 44.99 0.27 3.85 16 12 H 0.11 4.07 7.40 -2.39 -0.02 4.05 16 13 C -0.17 -6.08 6.96 -9.89 -0.07 -6.15 16 14 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 15 C 0.19 8.99 5.92 85.80 0.51 9.50 16 16 N -0.62 -32.01 3.45 -678.15 -2.34 -34.35 16 17 C -0.24 -13.33 10.36 84.03 0.87 -12.46 16 18 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 19 C -0.06 -3.62 5.42 84.86 0.46 -3.16 16 20 N -0.95 -56.94 10.82 21.65 0.23 -56.71 16 21 Si 0.98 45.30 29.56 68.60 2.03 47.33 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 C 0.15 6.19 7.05 86.54 0.61 6.80 16 26 C -0.16 -5.28 7.06 -9.89 -0.07 -5.35 16 27 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 28 C -0.03 -0.78 9.60 22.57 0.22 -0.56 16 29 C -0.02 -0.56 7.42 22.84 0.17 -0.39 16 30 O -0.22 -4.52 10.77 -9.54 -0.10 -4.62 16 31 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.18 1.24 6.36 -2.91 -0.02 1.23 16 36 H 0.42 6.41 6.83 -92.71 -0.63 5.78 16 37 H 0.06 3.40 6.56 -2.39 -0.02 3.38 16 38 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.14 3.44 7.63 -2.91 -0.02 3.41 16 Total: -1.00 -78.45 357.68 0.10 -78.34 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.44 Total: 12.43 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.72 Total: 10.23 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -7.92 Total: -122.93 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.17 Total: -25.40 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -78.45 0.10 -78.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960411195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.008 kcal (2) G-P(sol) polarization free energy of solvation -78.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds