Wall clock time and date at job start Tue Mar 31 2020 15:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29862 * 124.83162 * 2 1 4 4 C 1.36131 * 108.76816 * 180.02562 * 3 2 1 5 5 C 1.39267 * 133.77004 * 180.02562 * 4 3 2 6 6 C 1.39198 * 119.46560 * 179.97438 * 5 4 3 7 7 C 1.47716 * 119.94876 * 180.02562 * 6 5 4 8 8 O 1.21568 * 119.99824 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00032 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00256 * 179.97438 * 9 7 6 11 11 H 1.09000 * 115.51213 * 350.41810 * 10 9 7 12 12 C 1.53000 * 117.44333 * 205.00140 * 10 9 7 13 13 H 1.09003 * 119.53987 * 4.11229 * 12 10 9 14 14 C 1.54381 * 118.12250 * 159.21268 * 12 10 9 15 15 N 1.51833 * 102.86607 * 88.01989 * 14 12 10 16 16 C 1.36937 * 127.61066 * 140.54601 * 15 14 12 17 17 H 1.08003 * 120.00011 * 194.64731 * 16 15 14 18 18 C 1.38808 * 120.00066 * 14.64951 * 16 15 14 19 19 N 1.31623 * 120.00199 * 9.01699 * 18 16 15 20 20 Si 1.86802 * 120.00221 * 189.01289 * 18 16 15 21 21 H 1.48505 * 109.46882 * 59.99945 * 20 18 16 22 22 H 1.48497 * 109.47469 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47176 * 300.00384 * 20 18 16 24 24 C 1.48146 * 104.54692 * 320.27064 * 15 14 12 25 25 C 1.52997 * 117.44076 * 135.76084 * 10 9 7 26 26 H 1.09001 * 119.54426 * 355.88197 * 25 10 9 27 27 C 1.40054 * 120.09649 * 359.97438 * 6 5 4 28 28 C 1.36526 * 120.47238 * 0.02562 * 27 6 5 29 29 C 1.38897 * 120.19181 * 0.26454 * 28 27 6 30 30 O 1.34243 * 124.83255 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47158 * 89.99903 * 1 2 3 32 32 H 1.09009 * 109.47036 * 209.99591 * 1 2 3 33 33 H 1.08989 * 109.47450 * 329.99795 * 1 2 3 34 34 H 1.07994 * 120.26771 * 359.95197 * 5 4 3 35 35 H 0.97002 * 119.99707 * 359.97438 * 9 7 6 36 36 H 1.08997 * 110.40741 * 205.97272 * 14 12 10 37 37 H 1.08997 * 110.40482 * 328.40628 * 14 12 10 38 38 H 0.96998 * 120.00339 * 179.97438 * 19 18 16 39 39 H 1.09006 * 110.40745 * 281.07402 * 24 15 14 40 40 H 1.09001 * 110.40484 * 158.64953 * 24 15 14 41 41 H 1.07999 * 119.76041 * 180.02562 * 27 6 5 42 42 H 1.07999 * 119.90323 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0659 0.0000 4 6 3.5569 0.6893 -0.0006 5 6 4.7610 1.3891 -0.0004 6 6 5.9620 0.6854 -0.0006 7 6 7.2453 1.4169 0.0001 8 8 7.2520 2.6326 0.0005 9 7 8.4087 0.7366 0.0004 10 6 9.6816 1.4620 0.0006 11 1 9.6091 2.5372 -0.1632 12 6 10.9036 0.7420 -0.5729 13 1 10.7850 -0.2449 -1.0203 14 6 12.1020 1.5983 -1.0357 15 7 12.9247 1.7418 0.2323 16 6 14.2883 1.7060 0.3523 17 1 14.7418 1.5839 1.3249 18 6 15.0878 1.8266 -0.7760 19 7 14.5495 2.1517 -1.9323 20 14 16.9276 1.5278 -0.6535 21 1 17.1736 0.1398 -0.1862 22 1 17.5500 1.7178 -1.9883 23 1 17.5218 2.4874 0.3115 24 6 11.9226 1.9355 1.3061 25 6 10.7756 0.9661 0.9482 26 1 10.5617 0.1462 1.6339 27 6 5.9554 -0.7151 -0.0005 28 6 4.7754 -1.4019 -0.0007 29 6 3.5678 -0.7157 -0.0065 30 8 2.2738 -1.1019 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 4.7629 2.4690 -0.0004 35 1 8.4033 -0.2334 0.0005 36 1 12.6707 1.0729 -1.8029 37 1 11.7581 2.5626 -1.4097 38 1 15.1081 2.2363 -2.7207 39 1 11.5634 2.9646 1.3096 40 1 12.3496 1.6778 2.2754 41 1 6.8904 -1.2556 -0.0003 42 1 4.7810 -2.4819 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960482024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:41 Heat of formation + Delta-G solvation = 47.869617 kcal Electronic energy + Delta-G solvation = -25918.543217 eV Core-core repulsion = 22059.244273 eV Total energy + Delta-G solvation = -3859.298943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.41948 -41.38049 -39.98815 -38.57757 -36.14556 -35.96433 -34.43965 -32.78363 -32.10295 -31.79460 -29.24434 -28.88861 -27.57242 -25.56456 -23.72985 -23.34444 -22.72566 -22.00631 -21.98182 -20.79617 -19.47115 -18.83430 -18.72922 -18.02346 -17.92964 -17.17562 -16.72222 -16.28023 -16.06709 -15.52172 -15.32291 -15.14465 -14.82510 -14.78102 -14.59954 -14.17682 -14.10038 -13.71651 -13.57374 -13.43586 -13.30092 -13.20967 -12.90233 -12.73361 -12.67057 -12.38941 -12.17407 -12.05011 -11.85261 -11.66341 -11.63056 -11.27899 -10.83605 -10.69783 -10.10576 -9.71648 -9.66447 -8.91896 -7.89398 -5.24888 -0.49752 -0.41362 1.23135 1.34693 1.48128 1.51019 1.57790 1.60172 1.76682 2.49642 2.52874 2.74852 2.89135 3.27774 3.30064 3.44102 3.57301 3.80416 3.81730 3.86531 3.91485 3.98733 4.13676 4.15783 4.39113 4.51691 4.56903 4.60779 4.62347 4.77685 4.80136 4.89092 4.90258 4.99374 5.00605 5.04456 5.21336 5.28014 5.32898 5.40639 5.45239 5.52232 5.66324 6.13962 6.40682 6.44706 6.96934 7.06876 7.66814 8.46487 9.24866 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.045865 B = 0.001908 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.343283 B =14674.359760 C =14843.579053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.257 3.743 3 N -0.517 5.517 4 C -0.009 4.009 5 C -0.016 4.016 6 C -0.133 4.133 7 C 0.565 3.435 8 O -0.577 6.577 9 N -0.671 5.671 10 C 0.113 3.887 11 H 0.105 0.895 12 C -0.172 4.172 13 H 0.132 0.868 14 C 0.185 3.815 15 N -0.622 5.622 16 C -0.239 4.239 17 H 0.082 0.918 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.981 3.019 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.277 1.277 24 C 0.150 3.850 25 C -0.163 4.163 26 H 0.141 0.859 27 C -0.053 4.053 28 C -0.081 4.081 29 C 0.017 3.983 30 O -0.213 6.213 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.131 0.869 35 H 0.420 0.580 36 H 0.063 0.937 37 H 0.004 0.996 38 H 0.249 0.751 39 H 0.015 0.985 40 H 0.064 0.936 41 H 0.183 0.817 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.770 -13.411 4.500 32.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.046 3.954 3 N -0.247 5.247 4 C -0.120 4.120 5 C -0.036 4.036 6 C -0.138 4.138 7 C 0.354 3.646 8 O -0.457 6.457 9 N -0.321 5.321 10 C 0.006 3.994 11 H 0.123 0.877 12 C -0.193 4.193 13 H 0.150 0.850 14 C 0.061 3.939 15 N -0.348 5.348 16 C -0.368 4.368 17 H 0.100 0.900 18 C -0.258 4.258 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.203 1.203 24 C 0.024 3.976 25 C -0.184 4.184 26 H 0.158 0.842 27 C -0.071 4.071 28 C -0.099 4.099 29 C -0.034 4.034 30 O -0.105 6.105 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.149 0.851 35 H 0.259 0.741 36 H 0.081 0.919 37 H 0.022 0.978 38 H 0.058 0.942 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.200 0.800 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -28.738 -11.929 4.397 31.425 hybrid contribution 1.438 -0.370 -0.300 1.515 sum -27.300 -12.300 4.097 30.222 Atomic orbital electron populations 1.20805 0.76935 1.07342 1.07027 1.27634 0.98314 0.77201 0.92243 1.70667 1.01046 1.30533 1.22479 1.19865 0.92218 0.92374 1.07502 1.20324 0.88275 1.00592 0.94428 1.19577 0.91349 0.94838 1.08008 1.18330 0.84155 0.86703 0.75452 1.90796 1.87949 1.15518 1.51455 1.44969 1.03167 1.10667 1.73319 1.21438 0.79174 0.95989 1.02836 0.87689 1.24294 0.95542 1.01860 0.97631 0.85012 1.21464 0.88207 0.94728 0.89538 1.46388 1.01151 1.84113 1.03120 1.19374 0.80884 1.42193 0.94303 0.90000 1.25718 1.02528 1.01623 0.95895 1.70074 1.35666 1.53985 0.99999 0.85125 0.79390 0.78325 0.76303 1.20054 1.22115 1.20344 1.21206 0.88733 0.95128 0.92543 1.24303 0.97445 1.02967 0.93647 0.84164 1.21217 0.99610 0.91131 0.95173 1.19966 0.85612 1.02416 1.01896 1.20909 0.84993 0.93943 1.03529 1.84508 1.15011 1.36638 1.74356 0.86210 0.86249 0.86693 0.85114 0.74078 0.91880 0.97829 0.94150 0.96712 0.91775 0.80005 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 71.24 0.75 0.49 16 2 C 0.26 4.10 8.23 88.40 0.73 4.83 16 3 N -0.52 -12.10 11.34 -296.34 -3.36 -15.46 16 4 C -0.01 -0.22 7.23 39.28 0.28 0.06 16 5 C -0.02 -0.41 9.64 22.75 0.22 -0.19 16 6 C -0.13 -2.92 5.87 -20.10 -0.12 -3.04 16 7 C 0.56 15.71 7.77 86.75 0.67 16.38 16 8 O -0.58 -21.70 15.89 -3.93 -0.06 -21.76 16 9 N -0.67 -15.85 5.51 -445.53 -2.46 -18.31 16 10 C 0.11 3.58 5.97 44.99 0.27 3.85 16 11 H 0.11 4.06 7.40 -2.39 -0.02 4.05 16 12 C -0.17 -6.06 6.96 -9.89 -0.07 -6.12 16 13 H 0.13 3.89 8.14 -2.39 -0.02 3.87 16 14 C 0.19 9.01 5.92 85.79 0.51 9.52 16 15 N -0.62 -32.10 3.45 -678.18 -2.34 -34.44 16 16 C -0.24 -13.35 10.36 84.03 0.87 -12.48 16 17 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 18 C -0.06 -3.64 5.42 84.86 0.46 -3.18 16 19 N -0.95 -57.07 10.82 21.65 0.23 -56.84 16 20 Si 0.98 45.33 29.56 68.60 2.03 47.36 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.15 6.22 7.05 86.53 0.61 6.83 16 25 C -0.16 -5.28 7.06 -9.89 -0.07 -5.35 16 26 H 0.14 3.62 8.14 -2.39 -0.02 3.60 16 27 C -0.05 -0.70 9.47 22.31 0.21 -0.49 16 28 C -0.08 -1.02 9.99 22.03 0.22 -0.80 16 29 C 0.02 0.33 7.43 22.98 0.17 0.50 16 30 O -0.21 -3.66 10.77 -9.30 -0.10 -3.76 16 31 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.12 -0.08 8.14 -2.38 -0.02 -0.10 16 33 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.13 3.73 7.64 -2.91 -0.02 3.71 16 35 H 0.42 6.24 6.83 -92.71 -0.63 5.61 16 36 H 0.06 3.43 6.56 -2.39 -0.02 3.41 16 37 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.02 0.65 8.14 -2.38 -0.02 0.64 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.18 0.97 6.37 -2.91 -0.02 0.95 16 42 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -80.88 357.70 0.10 -80.78 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.44 Total: 11.61 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 5.72 Total: 10.81 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -7.92 Total: -125.05 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.16 Total: -25.51 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -80.88 0.10 -80.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960482024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.645 kcal (2) G-P(sol) polarization free energy of solvation -80.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds