Wall clock time and date at job start Tue Mar 31 2020 15:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30022 * 124.83435 * 2 1 4 4 C 1.35843 * 108.85610 * 180.02562 * 3 2 1 5 5 C 1.39840 * 133.62849 * 179.97438 * 4 3 2 6 6 C 1.36292 * 120.04085 * 179.70906 * 5 4 3 7 7 C 1.40090 * 120.41221 * 0.60010 * 6 5 4 8 8 C 1.47628 * 119.92577 * 179.69393 * 7 6 5 9 9 O 1.21575 * 120.00004 * 6.43125 * 8 7 6 10 10 N 1.34780 * 119.99905 * 186.43175 * 8 7 6 11 11 C 1.51843 * 127.70270 * 354.95031 * 10 8 7 12 12 C 1.56018 * 104.32138 * 181.39194 * 11 10 8 13 13 H 1.08998 * 116.24745 * 159.43931 * 12 11 10 14 14 C 1.57086 * 100.41231 * 32.81255 * 12 11 10 15 15 C 1.49290 * 126.94266 * 174.31555 * 10 8 7 16 16 H 1.09002 * 116.15510 * 16.70568 * 15 10 8 17 17 C 1.56016 * 104.09130 * 247.55331 * 15 10 8 18 18 N 1.47862 * 105.10855 * 287.92123 * 17 15 10 19 19 C 1.36933 * 126.94688 * 182.03175 * 18 17 15 20 20 H 1.08003 * 120.00562 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99981 * 359.97438 * 19 18 17 22 22 N 1.31624 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00114 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47280 * 59.99823 * 23 21 19 25 25 H 1.48498 * 109.47124 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47158 * 299.99776 * 23 21 19 27 27 C 1.39431 * 120.14889 * 359.42149 * 7 6 5 28 28 C 1.38292 * 119.61761 * 0.27278 * 27 7 6 29 29 O 1.34137 * 124.84868 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47245 * 269.96957 * 1 2 3 31 31 H 1.08996 * 109.47569 * 29.98036 * 1 2 3 32 32 H 1.09002 * 109.46653 * 149.97163 * 1 2 3 33 33 H 1.08004 * 119.98052 * 0.05680 * 5 4 3 34 34 H 1.07999 * 119.79463 * 180.31532 * 6 5 4 35 35 H 1.09004 * 110.89731 * 62.64456 * 11 10 8 36 36 H 1.09000 * 110.58052 * 299.98838 * 11 10 8 37 37 H 1.09002 * 112.36889 * 191.50473 * 14 12 11 38 38 H 1.09004 * 112.36726 * 64.06444 * 14 12 11 39 39 H 1.09004 * 110.31207 * 46.83326 * 17 15 10 40 40 H 1.09004 * 110.31175 * 169.01100 * 17 15 10 41 41 H 0.96997 * 119.99987 * 180.02562 * 22 21 19 42 42 H 1.07999 * 120.19623 * 180.29600 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2497 1.0672 0.0000 4 6 3.5556 0.6933 -0.0006 5 6 4.7618 1.4008 -0.0013 6 6 5.9473 0.7283 0.0042 7 6 5.9680 -0.6724 -0.0020 8 6 7.2582 -1.3899 -0.0027 9 8 8.2977 -0.7715 0.1199 10 7 7.2837 -2.7305 -0.1395 11 6 6.1008 -3.6806 -0.1980 12 6 6.7475 -5.0948 -0.3251 13 1 6.1201 -5.9392 -0.0396 14 6 8.0605 -4.8826 0.5108 15 6 8.4926 -3.5953 -0.2790 16 1 9.4421 -3.1440 0.0087 17 6 8.4021 -4.1421 -1.7374 18 7 7.2942 -5.1211 -1.7140 19 6 6.8582 -5.8957 -2.7556 20 1 6.0336 -6.5784 -2.6127 21 6 7.4760 -5.8035 -3.9952 22 7 8.4806 -4.9712 -4.1696 23 14 6.8817 -6.8608 -5.4159 24 1 5.4575 -6.5516 -5.7010 25 1 7.7013 -6.5765 -6.6212 26 1 7.0142 -8.2951 -5.0548 27 6 4.7728 -1.3905 -0.0018 28 6 3.5678 -0.7120 -0.0011 29 8 2.2734 -1.1008 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5143 33 1 4.7541 2.4808 -0.0005 34 1 6.8765 1.2787 0.0088 35 1 5.4761 -3.4708 -1.0663 36 1 5.5110 -3.6150 0.7163 37 1 8.7681 -5.7024 0.3868 38 1 7.8547 -4.6754 1.5610 39 1 8.1773 -3.3325 -2.4318 40 1 9.3348 -4.6327 -2.0161 41 1 8.9121 -4.9065 -5.0359 42 1 4.7879 -2.4704 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032460068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:20 Heat of formation + Delta-G solvation = 89.764682 kcal Electronic energy + Delta-G solvation = -27788.652579 eV Core-core repulsion = 23931.170342 eV Total energy + Delta-G solvation = -3857.482237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.40366 -40.26277 -38.50782 -37.14622 -35.03348 -33.70339 -32.14814 -31.65930 -30.69822 -29.08719 -28.78920 -28.16786 -25.44938 -24.26664 -23.39675 -22.66649 -21.92632 -20.74016 -19.89437 -18.95974 -18.21915 -17.24398 -17.10197 -17.01960 -16.36321 -15.71054 -15.10791 -14.82596 -14.47900 -14.14872 -14.06154 -13.96133 -13.60081 -13.43108 -13.30052 -13.17036 -12.67413 -12.44633 -12.27313 -11.95449 -11.76710 -11.61555 -11.35204 -11.29975 -11.07810 -10.90925 -10.87288 -10.65281 -10.52660 -10.22710 -10.12637 -9.72253 -9.64724 -8.96969 -8.75479 -8.57254 -8.12486 -6.99080 -5.81696 -3.16905 0.30525 1.11929 2.06199 2.28035 3.02753 3.16988 3.34526 3.38851 3.41080 3.56715 3.80281 4.33926 4.37142 4.50916 4.75499 4.81586 4.97025 4.97603 5.03557 5.05634 5.14539 5.23792 5.30540 5.34386 5.49556 5.51554 5.69458 5.73709 5.77938 5.81971 5.95080 6.00720 6.07136 6.15332 6.21263 6.30988 6.39599 6.47770 6.49753 6.59331 7.36040 7.41573 7.42511 7.66522 7.89344 8.04522 8.44289 9.04714 9.65715 10.33823 11.30248 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.003847 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.369904 B = 7277.003112 C = 8471.050399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.248 3.752 3 N -0.485 5.485 4 C 0.039 3.961 5 C -0.075 4.075 6 C -0.064 4.064 7 C -0.096 4.096 8 C 0.575 3.425 9 O -0.547 6.547 10 N -0.603 5.603 11 C 0.074 3.926 12 C 0.138 3.862 13 H 0.109 0.891 14 C -0.149 4.149 15 C 0.099 3.901 16 H 0.116 0.884 17 C 0.173 3.827 18 N -0.597 5.597 19 C -0.236 4.236 20 H 0.081 0.919 21 C -0.003 4.003 22 N -0.918 5.918 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C -0.084 4.084 28 C -0.001 4.001 29 O -0.209 6.209 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.183 7.339 11.249 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.038 3.962 3 N -0.216 5.216 4 C -0.073 4.073 5 C -0.094 4.094 6 C -0.084 4.084 7 C -0.099 4.099 8 C 0.364 3.636 9 O -0.427 6.427 10 N -0.336 5.336 11 C -0.050 4.050 12 C 0.029 3.971 13 H 0.126 0.874 14 C -0.189 4.189 15 C -0.003 4.003 16 H 0.134 0.866 17 C 0.048 3.952 18 N -0.321 5.321 19 C -0.364 4.364 20 H 0.099 0.901 21 C -0.200 4.200 22 N -0.564 5.564 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.210 1.210 27 C -0.102 4.102 28 C -0.051 4.051 29 O -0.101 6.101 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.779 8.299 11.011 18.134 hybrid contribution -0.187 -1.074 -0.970 1.459 sum -11.966 7.225 10.041 17.211 Atomic orbital electron populations 1.20428 0.80816 1.05720 1.05174 1.26539 0.96710 0.78405 0.94573 1.70598 1.01010 1.28979 1.20984 1.20036 0.92160 0.91416 1.03712 1.19946 0.88236 1.00374 1.00815 1.20870 0.98519 0.92666 0.96365 1.19835 0.92370 0.94105 1.03620 1.17497 0.87979 0.80701 0.77378 1.90754 1.33774 1.66267 1.51919 1.50025 1.09810 1.04394 1.69421 1.24379 0.88376 0.92223 0.99975 1.23222 0.93653 0.92958 0.87243 0.87371 1.24145 0.99587 0.97617 0.97525 1.24350 0.88327 0.88199 0.99425 0.86628 1.21967 0.92290 0.92020 0.88948 1.45240 1.36205 1.45692 1.04943 1.18995 1.13407 1.15963 0.88002 0.90148 1.24821 0.98124 0.99372 0.97719 1.69899 1.24424 1.38696 1.23419 0.86197 0.77870 0.79819 0.81818 1.21153 1.21576 1.21049 1.21451 0.86752 1.03234 0.98811 1.20138 0.83729 0.94345 1.06886 1.84482 1.15296 1.36006 1.74277 0.88293 0.87656 0.88694 0.84199 0.83298 0.89741 0.91564 0.89466 0.91490 0.93367 0.92393 0.93450 0.81106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.00 0.38 0.01 16 2 C 0.25 2.88 8.23 -13.05 -0.11 2.77 16 3 N -0.48 -6.74 11.33 -8.63 -0.10 -6.84 16 4 C 0.04 0.58 7.24 -84.63 -0.61 -0.03 16 5 C -0.07 -1.00 10.03 -39.68 -0.40 -1.40 16 6 C -0.06 -0.92 9.51 -39.59 -0.38 -1.30 16 7 C -0.10 -1.55 5.88 -104.93 -0.62 -2.17 16 8 C 0.58 10.72 7.86 -12.43 -0.10 10.62 16 9 O -0.55 -11.47 16.68 5.30 0.09 -11.38 16 10 N -0.60 -10.96 3.05 -155.06 -0.47 -11.43 16 11 C 0.07 1.20 4.41 0.60 0.00 1.21 16 12 C 0.14 2.43 5.46 -62.55 -0.34 2.09 16 13 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 14 C -0.15 -2.40 6.83 -22.30 -0.15 -2.55 16 15 C 0.10 1.86 5.20 -62.55 -0.33 1.54 16 16 H 0.12 2.11 8.04 -51.93 -0.42 1.69 16 17 C 0.17 4.03 4.76 -1.68 -0.01 4.02 16 18 N -0.60 -13.85 3.01 -156.34 -0.47 -14.32 16 19 C -0.24 -6.11 10.37 -15.06 -0.16 -6.26 16 20 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 21 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 22 N -0.92 -26.31 10.56 55.49 0.59 -25.73 16 23 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C -0.08 -1.27 8.90 -39.12 -0.35 -1.62 16 28 C 0.00 -0.02 7.42 -38.70 -0.29 -0.30 16 29 O -0.21 -2.85 10.77 3.76 0.04 -2.81 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.15 1.99 7.64 -52.49 -0.40 1.59 16 35 H 0.08 1.51 7.04 -51.93 -0.37 1.14 16 36 H 0.07 0.87 6.90 -51.93 -0.36 0.51 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 1.31 7.67 -51.93 -0.40 0.91 16 40 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.17 2.45 2.78 -53.09 -0.15 2.30 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -33.19 344.96 -8.67 -41.86 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.98 Total: 2.66 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -3.54 Total: 6.44 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.46 Total: -58.31 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.13 Total: -14.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.19 -8.67 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032460068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.628 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds