Wall clock time and date at job start Tue Mar 31 2020 15:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30022 * 124.83435 * 2 1 4 4 C 1.35843 * 108.85610 * 180.02562 * 3 2 1 5 5 C 1.39840 * 133.62849 * 179.97438 * 4 3 2 6 6 C 1.36292 * 120.04085 * 179.70906 * 5 4 3 7 7 C 1.40090 * 120.41221 * 0.60010 * 6 5 4 8 8 C 1.47628 * 119.92577 * 179.69393 * 7 6 5 9 9 O 1.21575 * 120.00004 * 6.43125 * 8 7 6 10 10 N 1.34780 * 119.99905 * 186.43175 * 8 7 6 11 11 C 1.51843 * 127.70270 * 354.95031 * 10 8 7 12 12 C 1.56018 * 104.32138 * 181.39194 * 11 10 8 13 13 H 1.08998 * 116.24745 * 159.43931 * 12 11 10 14 14 C 1.57086 * 100.41231 * 32.81255 * 12 11 10 15 15 C 1.49290 * 126.94266 * 174.31555 * 10 8 7 16 16 H 1.09002 * 116.15510 * 16.70568 * 15 10 8 17 17 C 1.56016 * 104.09130 * 247.55331 * 15 10 8 18 18 N 1.47862 * 105.10855 * 287.92123 * 17 15 10 19 19 C 1.36933 * 126.94688 * 182.03175 * 18 17 15 20 20 H 1.08003 * 120.00562 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99981 * 359.97438 * 19 18 17 22 22 N 1.31624 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00114 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47280 * 59.99823 * 23 21 19 25 25 H 1.48498 * 109.47124 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47158 * 299.99776 * 23 21 19 27 27 C 1.39431 * 120.14889 * 359.42149 * 7 6 5 28 28 C 1.38292 * 119.61761 * 0.27278 * 27 7 6 29 29 O 1.34137 * 124.84868 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47245 * 269.96957 * 1 2 3 31 31 H 1.08996 * 109.47569 * 29.98036 * 1 2 3 32 32 H 1.09002 * 109.46653 * 149.97163 * 1 2 3 33 33 H 1.08004 * 119.98052 * 0.05680 * 5 4 3 34 34 H 1.07999 * 119.79463 * 180.31532 * 6 5 4 35 35 H 1.09004 * 110.89731 * 62.64456 * 11 10 8 36 36 H 1.09000 * 110.58052 * 299.98838 * 11 10 8 37 37 H 1.09002 * 112.36889 * 191.50473 * 14 12 11 38 38 H 1.09004 * 112.36726 * 64.06444 * 14 12 11 39 39 H 1.09004 * 110.31207 * 46.83326 * 17 15 10 40 40 H 1.09004 * 110.31175 * 169.01100 * 17 15 10 41 41 H 0.96997 * 119.99987 * 180.02562 * 22 21 19 42 42 H 1.07999 * 120.19623 * 180.29600 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2497 1.0672 0.0000 4 6 3.5556 0.6933 -0.0006 5 6 4.7618 1.4008 -0.0013 6 6 5.9473 0.7283 0.0042 7 6 5.9680 -0.6724 -0.0020 8 6 7.2582 -1.3899 -0.0027 9 8 8.2977 -0.7715 0.1199 10 7 7.2837 -2.7305 -0.1395 11 6 6.1008 -3.6806 -0.1980 12 6 6.7475 -5.0948 -0.3251 13 1 6.1201 -5.9392 -0.0396 14 6 8.0605 -4.8826 0.5108 15 6 8.4926 -3.5953 -0.2790 16 1 9.4421 -3.1440 0.0087 17 6 8.4021 -4.1421 -1.7374 18 7 7.2942 -5.1211 -1.7140 19 6 6.8582 -5.8957 -2.7556 20 1 6.0336 -6.5784 -2.6127 21 6 7.4760 -5.8035 -3.9952 22 7 8.4806 -4.9712 -4.1696 23 14 6.8817 -6.8608 -5.4159 24 1 5.4575 -6.5516 -5.7010 25 1 7.7013 -6.5765 -6.6212 26 1 7.0142 -8.2951 -5.0548 27 6 4.7728 -1.3905 -0.0018 28 6 3.5678 -0.7120 -0.0011 29 8 2.2734 -1.1008 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5143 33 1 4.7541 2.4808 -0.0005 34 1 6.8765 1.2787 0.0088 35 1 5.4761 -3.4708 -1.0663 36 1 5.5110 -3.6150 0.7163 37 1 8.7681 -5.7024 0.3868 38 1 7.8547 -4.6754 1.5610 39 1 8.1773 -3.3325 -2.4318 40 1 9.3348 -4.6327 -2.0161 41 1 8.9121 -4.9065 -5.0359 42 1 4.7879 -2.4704 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032460068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:19 Heat of formation + Delta-G solvation = 66.763033 kcal Electronic energy + Delta-G solvation = -27789.650005 eV Core-core repulsion = 23931.170342 eV Total energy + Delta-G solvation = -3858.479663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.42340 -41.71064 -39.88494 -38.45580 -36.08120 -35.43977 -33.61559 -32.60978 -32.05544 -30.52224 -30.39729 -29.22664 -27.10057 -25.83209 -24.57959 -23.89535 -23.02626 -22.08090 -21.39591 -20.47961 -19.42103 -18.80325 -18.28355 -18.02375 -17.85952 -17.23805 -16.56043 -16.33857 -15.91212 -15.57518 -15.23567 -15.14739 -14.88013 -14.71504 -14.17158 -14.07021 -13.80113 -13.61214 -13.51778 -13.39436 -13.26990 -13.09285 -12.89903 -12.70705 -12.66601 -12.33493 -12.27279 -12.16096 -12.08401 -11.92174 -11.56204 -11.50468 -11.16994 -10.70865 -10.07732 -9.76539 -9.53412 -8.91580 -7.84714 -5.20467 -0.79551 0.00865 1.01485 1.30590 1.46941 1.49300 1.55453 1.70431 1.84650 2.48262 2.57694 2.71140 3.21230 3.26140 3.35144 3.43689 3.71053 3.75815 3.87713 3.90660 3.94134 4.01075 4.15844 4.24534 4.40710 4.52156 4.56302 4.62175 4.63703 4.67367 4.76557 4.84624 4.87409 4.98764 5.00572 5.10396 5.11102 5.18495 5.22312 5.41217 5.43974 5.51821 5.65784 6.09348 6.42263 6.45862 6.99146 7.02606 7.70751 8.40620 9.26245 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.003847 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.369904 B = 7277.003112 C = 8471.050399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.262 3.738 3 N -0.513 5.513 4 C 0.032 3.968 5 C -0.072 4.072 6 C -0.064 4.064 7 C -0.117 4.117 8 C 0.572 3.428 9 O -0.580 6.580 10 N -0.607 5.607 11 C 0.081 3.919 12 C 0.134 3.866 13 H 0.141 0.859 14 C -0.126 4.126 15 C 0.102 3.898 16 H 0.117 0.883 17 C 0.186 3.814 18 N -0.616 5.616 19 C -0.232 4.232 20 H 0.097 0.903 21 C -0.069 4.069 22 N -0.956 5.956 23 Si 0.975 3.025 24 H -0.278 1.278 25 H -0.304 1.304 26 H -0.272 1.272 27 C -0.078 4.078 28 C -0.021 4.021 29 O -0.215 6.215 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.165 0.835 34 H 0.154 0.846 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.105 0.895 39 H -0.004 1.004 40 H 0.021 0.979 41 H 0.243 0.757 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 6.829 13.262 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 N -0.243 5.243 4 C -0.080 4.080 5 C -0.091 4.091 6 C -0.084 4.084 7 C -0.121 4.121 8 C 0.363 3.637 9 O -0.462 6.462 10 N -0.340 5.340 11 C -0.041 4.041 12 C 0.028 3.972 13 H 0.158 0.842 14 C -0.165 4.165 15 C -0.001 4.001 16 H 0.135 0.865 17 C 0.060 3.940 18 N -0.340 5.340 19 C -0.360 4.360 20 H 0.115 0.885 21 C -0.262 4.262 22 N -0.605 5.605 23 Si 0.804 3.196 24 H -0.204 1.204 25 H -0.231 1.231 26 H -0.198 1.198 27 C -0.096 4.096 28 C -0.071 4.071 29 O -0.107 6.107 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.183 0.817 34 H 0.171 0.829 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.015 0.985 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.080 7.769 13.074 21.417 hybrid contribution 0.655 -0.866 -1.553 1.895 sum -14.425 6.903 11.521 19.710 Atomic orbital electron populations 1.20842 0.76690 1.07365 1.07235 1.27817 0.98480 0.77314 0.91159 1.70655 1.00651 1.29938 1.23103 1.20382 0.93068 0.91624 1.02958 1.20171 0.87423 1.01565 0.99922 1.20957 0.99232 0.92111 0.96147 1.19679 0.91494 0.94748 1.06164 1.17895 0.88575 0.80695 0.76569 1.90722 1.35120 1.66888 1.53493 1.50084 1.10082 1.04624 1.69164 1.24337 0.87694 0.90666 1.01450 1.23660 0.94775 0.94615 0.84186 0.84189 1.24057 0.98173 0.95478 0.98832 1.24194 0.89257 0.89884 0.96725 0.86471 1.21556 0.90991 0.90436 0.91032 1.45486 1.36422 1.45114 1.07027 1.19505 1.12720 1.15204 0.88604 0.88530 1.25638 0.98892 1.01149 1.00491 1.70147 1.26315 1.41042 1.23040 0.85196 0.77199 0.78751 0.78452 1.20405 1.23079 1.19820 1.21383 0.86587 1.03385 0.98247 1.20200 0.84314 0.94632 1.07937 1.84501 1.14820 1.36897 1.74481 0.85731 0.86216 0.86723 0.81726 0.82853 0.91511 0.87053 0.89580 0.87704 0.98531 0.96045 0.94741 0.80512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 71.23 0.75 0.25 16 2 C 0.26 5.39 8.23 88.38 0.73 6.12 16 3 N -0.51 -13.26 11.33 -296.05 -3.35 -16.61 16 4 C 0.03 0.90 7.24 39.47 0.29 1.19 16 5 C -0.07 -1.85 10.03 22.20 0.22 -1.63 16 6 C -0.06 -1.83 9.51 22.27 0.21 -1.62 16 7 C -0.12 -3.78 5.88 -20.06 -0.12 -3.89 16 8 C 0.57 21.52 7.86 86.72 0.68 22.20 16 9 O -0.58 -24.93 16.68 -3.95 -0.07 -25.00 16 10 N -0.61 -21.84 3.05 -762.76 -2.33 -24.17 16 11 C 0.08 2.47 4.41 86.37 0.38 2.85 16 12 C 0.13 4.38 5.46 46.93 0.26 4.64 16 13 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 14 C -0.13 -3.76 6.83 33.47 0.23 -3.53 16 15 C 0.10 3.86 5.20 46.93 0.24 4.11 16 16 H 0.12 4.37 8.04 -2.39 -0.02 4.35 16 17 C 0.19 9.10 4.76 87.16 0.41 9.51 16 18 N -0.62 -28.70 3.01 -648.55 -1.95 -30.65 16 19 C -0.23 -11.99 10.37 84.03 0.87 -11.12 16 20 H 0.10 4.58 7.83 -2.91 -0.02 4.55 16 21 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 22 N -0.96 -57.76 10.56 21.65 0.23 -57.53 16 23 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C -0.08 -2.27 8.90 22.57 0.20 -2.07 16 28 C -0.02 -0.60 7.42 22.84 0.17 -0.43 16 29 O -0.21 -5.41 10.77 -9.48 -0.10 -5.51 16 30 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 34 H 0.15 4.13 7.64 -2.91 -0.02 4.11 16 35 H 0.07 2.32 7.04 -2.38 -0.02 2.30 16 36 H 0.11 2.47 6.90 -2.39 -0.02 2.46 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.00 -0.21 7.67 -2.39 -0.02 -0.22 16 40 H 0.02 1.18 7.46 -2.38 -0.02 1.16 16 41 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.18 4.76 2.78 -3.48 -0.01 4.75 16 Total: -1.00 -76.70 344.96 1.51 -75.19 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.07 Total: 14.31 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 5.99 Total: 23.22 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -7.41 Total: -128.96 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.17 Total: -30.51 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.70 1.51 -75.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032460068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.948 kcal (2) G-P(sol) polarization free energy of solvation -76.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds