Wall clock time and date at job start Tue Mar 31 2020 15:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29872 * 124.83558 * 2 1 4 4 C 1.36128 * 108.76590 * 179.97438 * 3 2 1 5 5 C 1.39260 * 133.76230 * 180.02562 * 4 3 2 6 6 C 1.39195 * 119.47053 * 179.97438 * 5 4 3 7 7 C 1.47715 * 119.95666 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00251 * 186.68259 * 7 6 5 9 9 N 1.34776 * 119.99902 * 6.68310 * 7 6 5 10 10 C 1.51854 * 127.70024 * 354.96788 * 9 7 6 11 11 C 1.56023 * 104.31486 * 181.39043 * 10 9 7 12 12 H 1.09001 * 116.24554 * 159.44115 * 11 10 9 13 13 C 1.57085 * 100.41879 * 32.81140 * 11 10 9 14 14 C 1.49295 * 126.94636 * 174.32727 * 9 7 6 15 15 H 1.08992 * 116.14994 * 16.70722 * 14 9 7 16 16 C 1.56016 * 104.09219 * 247.55805 * 14 9 7 17 17 N 1.47865 * 105.10492 * 287.91951 * 16 14 9 18 18 C 1.36938 * 126.94326 * 182.03626 * 17 16 14 19 19 H 1.08008 * 119.99950 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00318 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99704 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00556 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46747 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47426 * 119.99483 * 22 20 18 25 25 H 1.48502 * 109.47015 * 239.99861 * 22 20 18 26 26 C 1.40050 * 120.08972 * 0.26150 * 6 5 4 27 27 C 1.36527 * 120.47483 * 359.47260 * 26 6 5 28 28 C 1.38892 * 120.19055 * 0.51135 * 27 26 6 29 29 O 1.34252 * 124.83581 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47273 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47188 * 299.99657 * 1 2 3 32 32 H 1.08997 * 109.47443 * 60.00036 * 1 2 3 33 33 H 1.07998 * 120.26576 * 359.96615 * 5 4 3 34 34 H 1.09001 * 110.89860 * 62.64565 * 10 9 7 35 35 H 1.08997 * 110.57595 * 299.98137 * 10 9 7 36 36 H 1.08992 * 112.36821 * 191.50615 * 13 11 10 37 37 H 1.09001 * 112.36581 * 64.05961 * 13 11 10 38 38 H 1.09002 * 110.31398 * 46.82759 * 16 14 9 39 39 H 1.08993 * 110.31349 * 169.01266 * 16 14 9 40 40 H 0.97005 * 120.00231 * 180.02562 * 21 20 18 41 41 H 1.08005 * 119.75810 * 179.72594 * 26 6 5 42 42 H 1.08010 * 119.90288 * 180.27270 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6892 0.0006 5 6 4.7608 1.3890 0.0013 6 6 5.9619 0.6854 0.0023 7 6 7.2452 1.4169 0.0025 8 8 8.2912 0.8094 -0.1191 9 7 7.2565 2.7578 0.1375 10 6 6.0635 3.6955 0.1949 11 6 6.6953 5.1165 0.3203 12 1 6.0590 5.9539 0.0338 13 6 8.0105 4.9174 -0.5153 14 6 8.4562 3.6357 0.2761 15 1 9.4103 3.1940 -0.0110 16 6 8.3599 4.1832 1.7338 17 7 7.2416 5.1503 1.7091 18 6 6.7974 5.9216 2.7498 19 1 5.9655 6.5953 2.6060 20 6 7.4161 5.8376 3.9895 21 7 8.4295 5.0162 4.1649 22 14 6.8097 6.8892 5.4094 23 1 5.6663 7.7212 4.9559 24 1 6.3721 6.0111 6.5241 25 1 7.9090 7.7716 5.8765 26 6 5.9553 -0.7150 -0.0029 27 6 4.7754 -1.4019 0.0018 28 6 3.5678 -0.7157 0.0011 29 8 2.2738 -1.1019 0.0005 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 4.7627 2.4690 0.0009 34 1 5.4411 3.4802 1.0636 35 1 5.4745 3.6225 -0.7193 36 1 8.7093 5.7446 -0.3923 37 1 7.8069 4.7067 -1.5652 38 1 8.1435 3.3721 2.4292 39 1 9.2872 4.6840 2.0120 40 1 8.8617 4.9572 5.0313 41 1 6.8903 -1.2555 -0.0066 42 1 4.7810 -2.4820 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032466944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:25 Heat of formation + Delta-G solvation = 89.386090 kcal Electronic energy + Delta-G solvation = -27763.055954 eV Core-core repulsion = 23905.557300 eV Total energy + Delta-G solvation = -3857.498654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.40339 -40.22992 -38.48496 -37.12430 -35.01991 -33.69767 -32.09192 -31.80166 -30.63173 -28.89636 -28.67047 -28.23288 -25.45194 -24.56137 -23.20832 -22.56966 -21.72742 -20.91806 -19.88424 -18.98910 -18.27992 -17.21256 -17.02784 -16.97800 -16.29496 -15.68510 -15.07973 -14.86373 -14.56138 -14.16288 -13.95278 -13.85331 -13.59335 -13.38131 -13.27510 -13.06964 -12.91062 -12.38244 -12.28689 -11.92264 -11.72910 -11.58357 -11.39617 -11.29588 -11.04545 -10.89023 -10.81141 -10.62847 -10.49843 -10.17581 -10.06842 -9.69081 -9.61660 -8.90621 -8.73441 -8.61356 -8.09603 -6.95716 -5.79173 -3.13990 0.58371 0.74612 2.23117 2.27791 2.97891 3.18917 3.36233 3.41478 3.44428 3.57781 3.82888 4.33229 4.39767 4.52134 4.70554 4.87167 4.99636 5.01588 5.04509 5.08593 5.19051 5.23990 5.30003 5.33802 5.52701 5.55885 5.63680 5.73418 5.78349 5.88586 6.01032 6.02991 6.12472 6.14713 6.22772 6.33824 6.39429 6.46481 6.53751 6.62692 7.39541 7.43556 7.45322 7.69831 7.93625 8.07208 8.48330 9.07690 9.68610 10.36808 11.32971 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.003827 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.531225 B = 7314.467740 C = 8505.523069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.239 3.761 3 N -0.471 5.471 4 C 0.014 3.986 5 C -0.052 4.052 6 C -0.121 4.121 7 C 0.576 3.424 8 O -0.551 6.551 9 N -0.604 5.604 10 C 0.075 3.925 11 C 0.138 3.862 12 H 0.109 0.891 13 C -0.149 4.149 14 C 0.099 3.901 15 H 0.115 0.885 16 C 0.173 3.827 17 N -0.597 5.597 18 C -0.233 4.233 19 H 0.082 0.918 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C -0.039 4.039 27 C -0.103 4.103 28 C 0.023 3.977 29 O -0.215 6.215 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.174 0.826 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.254 0.746 41 H 0.153 0.847 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 -9.742 -11.331 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.028 3.972 3 N -0.201 5.201 4 C -0.097 4.097 5 C -0.071 4.071 6 C -0.126 4.126 7 C 0.365 3.635 8 O -0.431 6.431 9 N -0.337 5.337 10 C -0.049 4.049 11 C 0.029 3.971 12 H 0.126 0.874 13 C -0.189 4.189 14 C -0.003 4.003 15 H 0.133 0.867 16 C 0.048 3.952 17 N -0.321 5.321 18 C -0.360 4.360 19 H 0.100 0.900 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.742 3.258 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.058 4.058 27 C -0.122 4.122 28 C -0.028 4.028 29 O -0.107 6.107 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.190 0.810 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.170 0.830 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.728 -9.474 -11.104 18.725 hybrid contribution -0.171 -0.347 0.993 1.066 sum -11.900 -9.821 -10.111 18.447 Atomic orbital electron populations 1.20394 0.80824 1.05074 1.05604 1.26481 0.96645 0.78240 0.95869 1.70621 1.00817 1.28869 1.19765 1.19751 0.92080 0.91144 1.06766 1.21941 0.87946 1.03229 0.93941 1.19896 0.93076 0.94119 1.05499 1.17537 0.88026 0.80701 0.77240 1.90743 1.33211 1.66998 1.52156 1.50021 1.09803 1.04397 1.69447 1.24379 0.88049 0.92337 1.00112 1.23226 0.93691 0.92953 0.87183 0.87357 1.24141 0.99553 0.97655 0.97527 1.24340 0.88548 0.87998 0.99417 0.86680 1.21961 0.92098 0.92191 0.88964 1.45259 1.35380 1.46458 1.05023 1.19099 1.12694 1.16240 0.88003 0.90022 1.24816 0.98121 0.99499 0.97719 1.69922 1.24115 1.39293 1.23169 0.86049 0.77848 0.79438 0.82417 1.20413 1.21790 1.21704 1.20839 0.97886 0.92699 0.94374 1.19512 0.86921 1.00417 1.05366 1.20556 0.83762 0.94697 1.03803 1.84460 1.15377 1.36380 1.74503 0.89059 0.87911 0.87981 0.80989 0.89686 0.91494 0.89494 0.91498 0.93396 0.92419 0.93608 0.82955 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.24 2.77 8.23 -13.11 -0.11 2.66 16 3 N -0.47 -6.91 11.34 -8.73 -0.10 -7.01 16 4 C 0.01 0.21 7.23 -84.73 -0.61 -0.40 16 5 C -0.05 -0.82 8.94 -38.85 -0.35 -1.17 16 6 C -0.12 -1.98 5.87 -104.99 -0.62 -2.59 16 7 C 0.58 10.86 7.86 -12.39 -0.10 10.76 16 8 O -0.55 -11.61 16.69 5.30 0.09 -11.52 16 9 N -0.60 -11.19 3.05 -154.93 -0.47 -11.66 16 10 C 0.07 1.26 4.41 0.61 0.00 1.26 16 11 C 0.14 2.50 5.46 -62.55 -0.34 2.16 16 12 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 13 C -0.15 -2.46 6.83 -22.30 -0.15 -2.61 16 14 C 0.10 1.89 5.20 -62.55 -0.33 1.57 16 15 H 0.12 2.13 8.04 -51.93 -0.42 1.71 16 16 C 0.17 4.09 4.76 -1.68 -0.01 4.08 16 17 N -0.60 -14.09 3.01 -156.35 -0.47 -14.56 16 18 C -0.23 -6.11 10.37 -15.06 -0.16 -6.26 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -26.57 10.56 55.49 0.59 -25.99 16 22 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C -0.04 -0.54 9.52 -39.52 -0.38 -0.92 16 27 C -0.10 -1.29 9.99 -39.96 -0.40 -1.68 16 28 C 0.02 0.32 7.43 -38.49 -0.29 0.03 16 29 O -0.22 -2.75 10.77 3.80 0.04 -2.71 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.17 2.65 2.79 -52.97 -0.15 2.51 16 34 H 0.09 1.59 7.04 -51.93 -0.37 1.22 16 35 H 0.07 0.93 6.91 -51.93 -0.36 0.58 16 36 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.31 7.67 -51.93 -0.40 0.91 16 39 H 0.06 1.50 7.46 -51.93 -0.39 1.11 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.15 1.95 7.64 -52.48 -0.40 1.55 16 42 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -33.60 345.00 -8.67 -42.27 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.98 Total: 2.68 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -3.54 Total: 6.68 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.46 Total: -59.22 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.13 Total: -14.23 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.60 -8.67 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032466944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.659 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds