Wall clock time and date at job start Tue Mar 31 2020 15:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29872 * 124.83558 * 2 1 4 4 C 1.36128 * 108.76590 * 179.97438 * 3 2 1 5 5 C 1.39260 * 133.76230 * 180.02562 * 4 3 2 6 6 C 1.39195 * 119.47053 * 179.97438 * 5 4 3 7 7 C 1.47715 * 119.95666 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00251 * 186.68259 * 7 6 5 9 9 N 1.34776 * 119.99902 * 6.68310 * 7 6 5 10 10 C 1.51854 * 127.70024 * 354.96788 * 9 7 6 11 11 C 1.56023 * 104.31486 * 181.39043 * 10 9 7 12 12 H 1.09001 * 116.24554 * 159.44115 * 11 10 9 13 13 C 1.57085 * 100.41879 * 32.81140 * 11 10 9 14 14 C 1.49295 * 126.94636 * 174.32727 * 9 7 6 15 15 H 1.08992 * 116.14994 * 16.70722 * 14 9 7 16 16 C 1.56016 * 104.09219 * 247.55805 * 14 9 7 17 17 N 1.47865 * 105.10492 * 287.91951 * 16 14 9 18 18 C 1.36938 * 126.94326 * 182.03626 * 17 16 14 19 19 H 1.08008 * 119.99950 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00318 * 359.97438 * 18 17 16 21 21 N 1.31618 * 119.99704 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00556 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46747 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47426 * 119.99483 * 22 20 18 25 25 H 1.48502 * 109.47015 * 239.99861 * 22 20 18 26 26 C 1.40050 * 120.08972 * 0.26150 * 6 5 4 27 27 C 1.36527 * 120.47483 * 359.47260 * 26 6 5 28 28 C 1.38892 * 120.19055 * 0.51135 * 27 26 6 29 29 O 1.34252 * 124.83581 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47273 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47188 * 299.99657 * 1 2 3 32 32 H 1.08997 * 109.47443 * 60.00036 * 1 2 3 33 33 H 1.07998 * 120.26576 * 359.96615 * 5 4 3 34 34 H 1.09001 * 110.89860 * 62.64565 * 10 9 7 35 35 H 1.08997 * 110.57595 * 299.98137 * 10 9 7 36 36 H 1.08992 * 112.36821 * 191.50615 * 13 11 10 37 37 H 1.09001 * 112.36581 * 64.05961 * 13 11 10 38 38 H 1.09002 * 110.31398 * 46.82759 * 16 14 9 39 39 H 1.08993 * 110.31349 * 169.01266 * 16 14 9 40 40 H 0.97005 * 120.00231 * 180.02562 * 21 20 18 41 41 H 1.08005 * 119.75810 * 179.72594 * 26 6 5 42 42 H 1.08010 * 119.90288 * 180.27270 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6892 0.0006 5 6 4.7608 1.3890 0.0013 6 6 5.9619 0.6854 0.0023 7 6 7.2452 1.4169 0.0025 8 8 8.2912 0.8094 -0.1191 9 7 7.2565 2.7578 0.1375 10 6 6.0635 3.6955 0.1949 11 6 6.6953 5.1165 0.3203 12 1 6.0590 5.9539 0.0338 13 6 8.0105 4.9174 -0.5153 14 6 8.4562 3.6357 0.2761 15 1 9.4103 3.1940 -0.0110 16 6 8.3599 4.1832 1.7338 17 7 7.2416 5.1503 1.7091 18 6 6.7974 5.9216 2.7498 19 1 5.9655 6.5953 2.6060 20 6 7.4161 5.8376 3.9895 21 7 8.4295 5.0162 4.1649 22 14 6.8097 6.8892 5.4094 23 1 5.6663 7.7212 4.9559 24 1 6.3721 6.0111 6.5241 25 1 7.9090 7.7716 5.8765 26 6 5.9553 -0.7150 -0.0029 27 6 4.7754 -1.4019 0.0018 28 6 3.5678 -0.7157 0.0011 29 8 2.2738 -1.1019 0.0005 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 4.7627 2.4690 0.0009 34 1 5.4411 3.4802 1.0636 35 1 5.4745 3.6225 -0.7193 36 1 8.7093 5.7446 -0.3923 37 1 7.8069 4.7067 -1.5652 38 1 8.1435 3.3721 2.4292 39 1 9.2872 4.6840 2.0120 40 1 8.8617 4.9572 5.0313 41 1 6.8903 -1.2555 -0.0066 42 1 4.7810 -2.4820 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032466944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:24 Heat of formation + Delta-G solvation = 65.911298 kcal Electronic energy + Delta-G solvation = -27764.073897 eV Core-core repulsion = 23905.557300 eV Total energy + Delta-G solvation = -3858.516597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.40562 -41.70697 -39.87644 -38.44435 -36.02399 -35.48231 -33.67029 -32.62246 -32.07444 -30.42801 -30.32720 -29.17525 -27.10652 -26.08341 -24.67488 -23.62851 -22.70315 -22.36857 -21.41032 -20.54812 -19.55289 -18.76711 -18.18698 -18.01028 -17.75898 -17.24027 -16.55527 -16.34671 -15.96168 -15.65661 -15.23356 -14.97990 -14.87818 -14.71725 -14.10248 -14.07610 -13.86953 -13.61705 -13.52352 -13.47663 -13.28174 -13.09863 -12.89155 -12.76479 -12.68236 -12.36163 -12.23124 -12.15932 -11.99354 -11.88692 -11.56470 -11.50079 -11.16318 -10.73448 -10.06340 -9.70204 -9.58614 -8.91992 -7.85471 -5.21114 -0.47531 -0.39061 1.24349 1.34588 1.46314 1.46704 1.56853 1.64424 1.80116 2.47456 2.58716 2.67889 3.23652 3.26452 3.34797 3.44254 3.72699 3.76404 3.86832 3.93181 4.00627 4.03223 4.13140 4.20934 4.39908 4.48969 4.57150 4.60189 4.63932 4.67009 4.81179 4.84280 4.91070 4.98663 5.00297 5.08955 5.10462 5.21576 5.23124 5.36313 5.43505 5.51648 5.65300 6.08844 6.44968 6.46590 7.00236 7.02410 7.69886 8.39848 9.25906 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.003827 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.531225 B = 7314.467740 C = 8505.523069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.254 3.746 3 N -0.509 5.509 4 C -0.004 4.004 5 C -0.061 4.061 6 C -0.136 4.136 7 C 0.571 3.429 8 O -0.581 6.581 9 N -0.608 5.608 10 C 0.085 3.915 11 C 0.133 3.867 12 H 0.139 0.861 13 C -0.126 4.126 14 C 0.103 3.897 15 H 0.119 0.881 16 C 0.186 3.814 17 N -0.616 5.616 18 C -0.229 4.229 19 H 0.096 0.904 20 C -0.070 4.070 21 N -0.956 5.956 22 Si 0.975 3.025 23 H -0.258 1.258 24 H -0.301 1.301 25 H -0.295 1.295 26 C -0.047 4.047 27 C -0.086 4.086 28 C 0.012 3.988 29 O -0.214 6.214 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.171 0.829 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.104 0.896 38 H -0.004 1.004 39 H 0.022 0.978 40 H 0.243 0.757 41 H 0.161 0.839 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.175 -10.084 -13.291 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.043 3.957 3 N -0.239 5.239 4 C -0.115 4.115 5 C -0.079 4.079 6 C -0.141 4.141 7 C 0.362 3.638 8 O -0.463 6.463 9 N -0.340 5.340 10 C -0.038 4.038 11 C 0.027 3.973 12 H 0.156 0.844 13 C -0.165 4.165 14 C 0.000 4.000 15 H 0.137 0.863 16 C 0.060 3.940 17 N -0.341 5.341 18 C -0.358 4.358 19 H 0.114 0.886 20 C -0.262 4.262 21 N -0.606 5.606 22 Si 0.804 3.196 23 H -0.182 1.182 24 H -0.229 1.229 25 H -0.223 1.223 26 C -0.066 4.066 27 C -0.104 4.104 28 C -0.039 4.039 29 O -0.106 6.106 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.188 0.812 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.014 0.986 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.178 0.822 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.831 -9.789 -13.115 22.086 hybrid contribution 0.620 -0.309 1.564 1.711 sum -14.211 -10.099 -11.551 20.913 Atomic orbital electron populations 1.20794 0.76755 1.07308 1.07027 1.27703 0.98367 0.77207 0.92394 1.70642 1.00654 1.30309 1.22303 1.19927 0.92482 0.92049 1.07012 1.21828 0.88109 1.03149 0.94843 1.19782 0.91890 0.95045 1.07355 1.17987 0.88721 0.80671 0.76424 1.90710 1.34489 1.67538 1.53592 1.50086 1.09984 1.04687 1.69268 1.24282 0.87381 0.90954 1.01173 1.23655 0.94903 0.94449 0.84297 0.84371 1.24049 0.98010 0.95656 0.98773 1.24193 0.89489 0.89636 0.96702 0.86346 1.21554 0.90831 0.90542 0.91045 1.45502 1.35610 1.45914 1.07043 1.19577 1.12071 1.15488 0.88652 0.88613 1.25633 0.98876 1.01265 1.00453 1.70159 1.25926 1.41554 1.22923 0.85052 0.77648 0.77787 0.79130 1.18212 1.22923 1.22254 1.20966 0.98989 0.91826 0.94792 1.19823 0.85643 1.02038 1.02885 1.20818 0.84770 0.94394 1.03887 1.84496 1.14829 1.36823 1.74460 0.86456 0.86581 0.86065 0.81195 0.91838 0.87500 0.89473 0.87774 0.98557 0.95941 0.94729 0.82187 0.80618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 71.23 0.75 0.25 16 2 C 0.25 5.26 8.23 88.40 0.73 5.99 16 3 N -0.51 -14.20 11.34 -296.35 -3.36 -17.56 16 4 C 0.00 -0.13 7.23 39.27 0.28 0.15 16 5 C -0.06 -1.90 8.94 22.75 0.20 -1.69 16 6 C -0.14 -4.45 5.87 -20.10 -0.12 -4.57 16 7 C 0.57 21.87 7.86 86.75 0.68 22.56 16 8 O -0.58 -25.06 16.69 -3.94 -0.07 -25.12 16 9 N -0.61 -22.61 3.05 -762.36 -2.33 -24.94 16 10 C 0.08 2.76 4.41 86.37 0.38 3.14 16 11 C 0.13 4.58 5.46 46.93 0.26 4.84 16 12 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 13 C -0.13 -3.88 6.83 33.47 0.23 -3.65 16 14 C 0.10 3.97 5.20 46.93 0.24 4.21 16 15 H 0.12 4.48 8.04 -2.39 -0.02 4.46 16 16 C 0.19 9.28 4.76 87.16 0.41 9.69 16 17 N -0.62 -29.47 3.01 -648.56 -1.95 -31.42 16 18 C -0.23 -12.13 10.37 84.03 0.87 -11.26 16 19 H 0.10 4.69 7.83 -2.91 -0.02 4.67 16 20 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 21 N -0.96 -58.38 10.56 21.65 0.23 -58.15 16 22 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 C -0.05 -1.27 9.52 22.31 0.21 -1.06 16 27 C -0.09 -1.96 9.99 22.03 0.22 -1.74 16 28 C 0.01 0.33 7.43 22.98 0.17 0.50 16 29 O -0.21 -4.93 10.77 -9.33 -0.10 -5.03 16 30 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.17 5.17 2.79 -3.37 -0.01 5.16 16 34 H 0.06 2.39 7.04 -2.39 -0.02 2.37 16 35 H 0.11 2.70 6.91 -2.39 -0.02 2.68 16 36 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.00 -0.22 7.67 -2.39 -0.02 -0.24 16 39 H 0.02 1.25 7.46 -2.39 -0.02 1.24 16 40 H 0.24 14.65 8.31 -92.70 -0.77 13.88 16 41 H 0.16 4.03 7.64 -2.91 -0.02 4.01 16 42 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -77.88 345.00 1.51 -76.37 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.07 Total: 14.41 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 5.99 Total: 23.93 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -7.41 Total: -132.07 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.17 Total: -30.15 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -77.88 1.51 -76.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032466944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.286 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds