Wall clock time and date at job start Tue Mar 31 2020 16:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39637 * 120.48907 * 190.96272 * 3 2 1 5 5 N 1.31750 * 120.88566 * 179.97438 * 4 3 2 6 6 C 1.31736 * 122.03520 * 0.02562 * 5 4 3 7 7 C 1.39595 * 120.88063 * 359.97438 * 6 5 4 8 8 C 1.47859 * 120.49231 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00238 * 44.02738 * 8 7 6 10 10 N 1.34776 * 119.99906 * 224.02902 * 8 7 6 11 11 C 1.47132 * 121.06086 * 175.80629 * 10 8 7 12 12 C 1.53222 * 108.72849 * 232.31585 * 11 10 8 13 13 O 1.43122 * 109.35496 * 305.80217 * 12 11 10 14 14 C 1.42364 * 113.98823 * 59.77871 * 13 12 11 15 15 C 1.52931 * 114.29796 * 74.95718 * 14 13 12 16 16 N 1.47175 * 87.83911 * 88.27363 * 15 14 13 17 17 C 1.36934 * 135.99347 * 206.64938 * 16 15 14 18 18 H 1.07998 * 120.00171 * 7.95562 * 17 16 15 19 19 C 1.38814 * 119.99789 * 187.96053 * 17 16 15 20 20 N 1.31618 * 119.99873 * 195.23913 * 19 17 16 21 21 Si 1.86797 * 119.99921 * 15.23976 * 19 17 16 22 22 H 1.48498 * 109.47442 * 269.99876 * 21 19 17 23 23 H 1.48499 * 109.47145 * 30.00352 * 21 19 17 24 24 H 1.48502 * 109.47080 * 149.99965 * 21 19 17 25 25 C 1.47169 * 88.00662 * 26.90071 * 16 15 14 26 26 C 1.47362 * 121.06285 * 355.83153 * 10 8 7 27 27 C 1.39682 * 120.49093 * 11.22035 * 3 2 1 28 28 H 4.52731 * 13.92852 * 0.02562 * 4 2 1 29 29 H 1.08001 * 119.56026 * 359.96073 * 4 3 2 30 30 H 1.08002 * 119.55773 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.59144 * 112.54236 * 11 10 8 32 32 H 1.09005 * 109.59455 * 352.09346 * 11 10 8 33 33 H 1.08997 * 109.49143 * 185.83974 * 12 11 10 34 34 H 1.09003 * 109.49005 * 65.77020 * 12 11 10 35 35 H 1.08998 * 113.49140 * 333.53388 * 15 14 13 36 36 H 1.08997 * 113.54740 * 203.02313 * 15 14 13 37 37 H 0.97001 * 120.00150 * 354.92473 * 20 19 17 38 38 H 1.09000 * 113.49303 * 87.84088 * 25 16 15 39 39 H 1.09002 * 113.49124 * 218.35159 * 25 16 15 40 40 H 1.09000 * 109.74606 * 12.08689 * 26 10 8 41 41 H 1.09005 * 109.74434 * 251.36618 * 26 10 8 42 42 H 1.07998 * 120.91778 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3140 1.1823 0.2288 5 7 4.6314 1.1917 0.2311 6 6 5.3384 0.1004 0.0196 7 6 4.7120 -1.1243 -0.2175 8 6 5.5139 -2.3440 -0.4532 9 8 6.4792 -2.5813 0.2463 10 7 5.1746 -3.1926 -1.4438 11 6 6.0073 -4.3642 -1.7582 12 6 6.3268 -4.3527 -3.2567 13 8 5.1072 -4.2715 -4.0012 14 6 4.3348 -3.1088 -3.7216 15 6 4.8858 -1.8234 -4.3405 16 7 4.1001 -2.1330 -5.5458 17 6 4.1940 -1.8500 -6.8823 18 1 5.0784 -1.3674 -7.2713 19 6 3.1524 -2.1834 -7.7372 20 7 3.3472 -2.1945 -9.0388 21 14 1.4742 -2.6163 -7.0402 22 1 1.4051 -4.0780 -6.7878 23 1 1.2634 -1.8833 -5.7660 24 1 0.4201 -2.2315 -8.0128 25 6 3.1659 -2.8746 -4.6839 26 6 3.9582 -2.9763 -2.2469 27 6 3.3153 -1.1797 -0.2342 28 1 -1.0500 -0.0011 0.0003 29 1 2.7743 2.1009 0.4062 30 1 6.4170 0.1541 0.0299 31 1 5.4652 -5.2758 -1.5069 32 1 6.9341 -4.3180 -1.1863 33 1 6.8551 -5.2683 -3.5229 34 1 6.9526 -3.4909 -3.4885 35 1 5.9629 -1.8479 -4.5059 36 1 4.5582 -0.9185 -3.8289 37 1 4.1956 -1.8991 -9.4048 38 1 2.3753 -2.2527 -4.2638 39 1 2.7865 -3.7891 -5.1399 40 1 3.5633 -1.9785 -2.0558 41 1 3.2090 -3.7250 -1.9895 42 1 2.7989 -2.1100 -0.4191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053421829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:01 Heat of formation + Delta-G solvation = 104.837948 kcal Electronic energy + Delta-G solvation = -28143.427637 eV Core-core repulsion = 24286.599027 eV Total energy + Delta-G solvation = -3856.828611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.31451 -40.17050 -38.94144 -36.59273 -35.10019 -34.59805 -32.93940 -32.43407 -30.90780 -30.36590 -28.33025 -26.30078 -25.68540 -25.09012 -24.36188 -23.26903 -21.67190 -20.53012 -19.33282 -18.80452 -17.61198 -17.53675 -17.34316 -16.99916 -16.44566 -16.04015 -15.85609 -15.17087 -14.99602 -14.67413 -14.38925 -14.18925 -13.91657 -13.87146 -13.57913 -13.43941 -13.20059 -12.99803 -12.78540 -12.24563 -11.97317 -11.82726 -11.47788 -11.19411 -11.16212 -10.89320 -10.69609 -10.58777 -10.34396 -10.04314 -9.93096 -9.69856 -9.44762 -9.23552 -9.16034 -8.85827 -8.55208 -7.24814 -6.33882 -3.26014 0.23879 0.54580 2.29718 2.33143 2.55366 2.79327 3.36105 3.41528 3.55731 3.56824 3.71630 3.75211 4.01504 4.19378 4.30944 4.40845 4.48902 4.56106 4.70968 4.77816 4.82051 4.86313 4.98764 5.09681 5.19217 5.31109 5.40262 5.43938 5.50504 5.52304 5.61451 5.63783 5.75524 5.96394 5.99290 6.07631 6.14774 6.17336 6.24864 6.39823 7.01084 7.02930 7.12468 7.44541 7.47268 7.79271 8.20406 8.93392 9.46139 10.29320 11.16143 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.004817 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.310986 B = 5811.458762 C = 7308.999478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.158 4.158 3 C -0.040 4.040 4 C 0.145 3.855 5 N -0.479 5.479 6 C 0.162 3.838 7 C -0.176 4.176 8 C 0.571 3.429 9 O -0.532 6.532 10 N -0.602 5.602 11 C 0.079 3.921 12 C 0.046 3.954 13 O -0.333 6.333 14 C 0.059 3.941 15 C 0.101 3.899 16 N -0.610 5.610 17 C -0.304 4.304 18 H 0.082 0.918 19 C -0.021 4.021 20 N -0.930 5.930 21 Si 1.060 2.940 22 H -0.291 1.291 23 H -0.283 1.283 24 H -0.293 1.293 25 C 0.119 3.881 26 C 0.082 3.918 27 C -0.027 4.027 28 H 0.228 0.772 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 0.583 21.350 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.159 4.159 3 C -0.042 4.042 4 C -0.013 4.013 5 N -0.185 5.185 6 C 0.004 3.996 7 C -0.181 4.181 8 C 0.358 3.642 9 O -0.409 6.409 10 N -0.335 5.335 11 C -0.043 4.043 12 C -0.032 4.032 13 O -0.250 6.250 14 C 0.016 3.984 15 C -0.025 4.025 16 N -0.338 5.338 17 C -0.430 4.430 18 H 0.099 0.901 19 C -0.221 4.221 20 N -0.571 5.571 21 Si 0.891 3.109 22 H -0.218 1.218 23 H -0.209 1.209 24 H -0.221 1.221 25 C -0.007 4.007 26 C -0.042 4.042 27 C -0.053 4.053 28 H 0.245 0.755 29 H 0.184 0.816 30 H 0.186 0.814 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.386 0.651 21.021 21.166 hybrid contribution 0.924 -0.003 0.322 0.979 sum -1.462 0.648 21.344 21.404 Atomic orbital electron populations 1.24974 0.95745 0.97816 0.98080 1.19523 0.91399 1.02656 1.02319 1.16785 0.88247 0.94816 1.04385 1.23186 0.89712 0.96969 0.91413 1.67808 1.07568 1.29712 1.13456 1.23005 1.00934 0.85894 0.89728 1.20830 0.94111 0.96275 1.06886 1.17990 0.83970 0.82175 0.80052 1.90795 1.28437 1.74953 1.46702 1.48091 1.25796 1.26203 1.33404 1.22376 0.96882 0.87529 0.97498 1.22957 0.87768 1.03123 0.89309 1.88002 1.32697 1.40362 1.63973 1.23124 0.96185 0.88193 0.90853 1.22830 0.97349 0.93797 0.88566 1.45978 1.26540 1.59937 1.01301 1.20084 1.03548 1.40504 0.78823 0.90051 1.25764 1.02441 0.99450 0.94408 1.70890 1.28202 1.47357 1.10684 0.83811 0.76267 0.76247 0.74559 1.21817 1.20931 1.22071 1.22668 0.92038 0.96456 0.89564 1.22745 0.86854 1.03429 0.91132 1.21986 0.92538 0.98592 0.92200 0.75507 0.81626 0.81368 0.90248 0.87941 0.87454 0.92480 0.93313 0.94275 0.92784 0.92198 0.91576 0.88064 0.89787 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 19.25 29.55 0.57 -0.59 16 2 C -0.16 -1.55 13.27 -38.84 -0.52 -2.06 16 3 C -0.04 -0.42 5.73 -106.91 -0.61 -1.03 16 4 C 0.15 1.47 10.90 -17.06 -0.19 1.29 16 5 N -0.48 -5.55 10.33 -12.59 -0.13 -5.68 16 6 C 0.16 1.87 10.84 -17.09 -0.19 1.68 16 7 C -0.18 -2.07 5.22 -104.87 -0.55 -2.61 16 8 C 0.57 7.50 7.35 -12.32 -0.09 7.41 16 9 O -0.53 -8.22 16.47 5.32 0.09 -8.14 16 10 N -0.60 -7.55 3.03 -173.58 -0.53 -8.07 16 11 C 0.08 0.91 6.58 -3.58 -0.02 0.89 16 12 C 0.05 0.61 6.90 37.27 0.26 0.86 16 13 O -0.33 -5.83 10.55 -35.23 -0.37 -6.20 16 14 C 0.06 1.00 1.29 -90.67 -0.12 0.88 16 15 C 0.10 1.99 7.90 -8.18 -0.06 1.93 16 16 N -0.61 -14.89 3.62 -184.54 -0.67 -15.56 16 17 C -0.30 -8.74 11.03 -15.06 -0.17 -8.91 16 18 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 19 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 20 N -0.93 -29.25 13.70 55.49 0.76 -28.49 16 21 Si 1.06 26.01 25.51 -169.99 -4.34 21.68 16 22 H -0.29 -6.86 6.97 56.52 0.39 -6.47 16 23 H -0.28 -6.26 5.65 56.52 0.32 -5.94 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 C 0.12 2.42 5.04 -8.04 -0.04 2.38 16 26 C 0.08 1.04 4.41 -3.68 -0.02 1.03 16 27 C -0.03 -0.29 7.20 -38.46 -0.28 -0.57 16 28 H 0.23 0.90 7.80 -54.09 -0.42 0.47 16 29 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.14 7.09 -51.93 -0.37 0.77 16 33 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.80 7.30 -51.93 -0.38 0.42 16 35 H 0.05 0.98 7.36 -51.93 -0.38 0.60 16 36 H 0.04 0.73 7.93 -51.93 -0.41 0.32 16 37 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 38 H 0.06 1.12 6.94 -51.93 -0.36 0.76 16 39 H 0.07 1.42 6.28 -51.93 -0.33 1.09 16 40 H 0.10 1.22 4.31 -51.93 -0.22 1.00 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.15 1.35 6.50 -52.49 -0.34 1.01 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -35.54 350.20 -7.01 -42.56 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.99 Total: 0.79 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.11 Total: 1.85 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.56 Total: -57.81 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.28 Total: -14.34 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -4.34 Total: 21.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.54 -7.01 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053421829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.394 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds