Wall clock time and date at job start Tue Mar 31 2020 16:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39637 * 120.48907 * 190.96272 * 3 2 1 5 5 N 1.31750 * 120.88566 * 179.97438 * 4 3 2 6 6 C 1.31736 * 122.03520 * 0.02562 * 5 4 3 7 7 C 1.39595 * 120.88063 * 359.97438 * 6 5 4 8 8 C 1.47859 * 120.49231 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00238 * 44.02738 * 8 7 6 10 10 N 1.34776 * 119.99906 * 224.02902 * 8 7 6 11 11 C 1.47132 * 121.06086 * 175.80629 * 10 8 7 12 12 C 1.53222 * 108.72849 * 232.31585 * 11 10 8 13 13 O 1.43122 * 109.35496 * 305.80217 * 12 11 10 14 14 C 1.42364 * 113.98823 * 59.77871 * 13 12 11 15 15 C 1.52931 * 114.29796 * 74.95718 * 14 13 12 16 16 N 1.47175 * 87.83911 * 88.27363 * 15 14 13 17 17 C 1.36934 * 135.99347 * 206.64938 * 16 15 14 18 18 H 1.07998 * 120.00171 * 7.95562 * 17 16 15 19 19 C 1.38814 * 119.99789 * 187.96053 * 17 16 15 20 20 N 1.31618 * 119.99873 * 195.23913 * 19 17 16 21 21 Si 1.86797 * 119.99921 * 15.23976 * 19 17 16 22 22 H 1.48498 * 109.47442 * 269.99876 * 21 19 17 23 23 H 1.48499 * 109.47145 * 30.00352 * 21 19 17 24 24 H 1.48502 * 109.47080 * 149.99965 * 21 19 17 25 25 C 1.47169 * 88.00662 * 26.90071 * 16 15 14 26 26 C 1.47362 * 121.06285 * 355.83153 * 10 8 7 27 27 C 1.39682 * 120.49093 * 11.22035 * 3 2 1 28 28 H 4.52731 * 13.92852 * 0.02562 * 4 2 1 29 29 H 1.08001 * 119.56026 * 359.96073 * 4 3 2 30 30 H 1.08002 * 119.55773 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.59144 * 112.54236 * 11 10 8 32 32 H 1.09005 * 109.59455 * 352.09346 * 11 10 8 33 33 H 1.08997 * 109.49143 * 185.83974 * 12 11 10 34 34 H 1.09003 * 109.49005 * 65.77020 * 12 11 10 35 35 H 1.08998 * 113.49140 * 333.53388 * 15 14 13 36 36 H 1.08997 * 113.54740 * 203.02313 * 15 14 13 37 37 H 0.97001 * 120.00150 * 354.92473 * 20 19 17 38 38 H 1.09000 * 113.49303 * 87.84088 * 25 16 15 39 39 H 1.09002 * 113.49124 * 218.35159 * 25 16 15 40 40 H 1.09000 * 109.74606 * 12.08689 * 26 10 8 41 41 H 1.09005 * 109.74434 * 251.36618 * 26 10 8 42 42 H 1.07998 * 120.91778 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3140 1.1823 0.2288 5 7 4.6314 1.1917 0.2311 6 6 5.3384 0.1004 0.0196 7 6 4.7120 -1.1243 -0.2175 8 6 5.5139 -2.3440 -0.4532 9 8 6.4792 -2.5813 0.2463 10 7 5.1746 -3.1926 -1.4438 11 6 6.0073 -4.3642 -1.7582 12 6 6.3268 -4.3527 -3.2567 13 8 5.1072 -4.2715 -4.0012 14 6 4.3348 -3.1088 -3.7216 15 6 4.8858 -1.8234 -4.3405 16 7 4.1001 -2.1330 -5.5458 17 6 4.1940 -1.8500 -6.8823 18 1 5.0784 -1.3674 -7.2713 19 6 3.1524 -2.1834 -7.7372 20 7 3.3472 -2.1945 -9.0388 21 14 1.4742 -2.6163 -7.0402 22 1 1.4051 -4.0780 -6.7878 23 1 1.2634 -1.8833 -5.7660 24 1 0.4201 -2.2315 -8.0128 25 6 3.1659 -2.8746 -4.6839 26 6 3.9582 -2.9763 -2.2469 27 6 3.3153 -1.1797 -0.2342 28 1 -1.0500 -0.0011 0.0003 29 1 2.7743 2.1009 0.4062 30 1 6.4170 0.1541 0.0299 31 1 5.4652 -5.2758 -1.5069 32 1 6.9341 -4.3180 -1.1863 33 1 6.8551 -5.2683 -3.5229 34 1 6.9526 -3.4909 -3.4885 35 1 5.9629 -1.8479 -4.5059 36 1 4.5582 -0.9185 -3.8289 37 1 4.1956 -1.8991 -9.4048 38 1 2.3753 -2.2527 -4.2638 39 1 2.7865 -3.7891 -5.1399 40 1 3.5633 -1.9785 -2.0558 41 1 3.2090 -3.7250 -1.9895 42 1 2.7989 -2.1100 -0.4191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053421829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:00 Heat of formation + Delta-G solvation = 78.833160 kcal Electronic energy + Delta-G solvation = -28144.555290 eV Core-core repulsion = 24286.599027 eV Total energy + Delta-G solvation = -3857.956263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.33607 -41.27490 -40.05950 -37.99084 -36.17082 -35.32151 -34.62979 -33.71909 -31.73791 -31.57404 -29.68702 -27.82862 -27.23144 -25.99880 -25.19387 -24.35071 -23.28822 -21.62721 -20.66942 -19.78668 -19.44904 -18.46239 -18.21761 -17.96105 -17.51653 -17.32683 -17.07922 -16.28499 -16.02207 -15.91520 -15.56617 -15.37194 -15.26754 -15.20113 -15.02479 -14.71996 -14.41295 -14.14142 -13.61671 -13.46802 -13.25443 -12.91609 -12.78321 -12.64858 -12.48050 -12.21933 -11.86335 -11.78896 -11.57774 -11.45020 -11.35828 -10.91937 -10.86667 -10.83889 -10.55705 -9.90993 -9.70933 -9.28140 -8.64442 -5.48702 -0.54951 -0.23444 1.35249 1.39722 1.52824 1.59111 1.67377 1.75176 2.03318 2.47906 2.56444 2.81750 2.88594 2.95577 3.14260 3.23015 3.37839 3.43077 3.51502 3.61729 3.66662 3.78816 4.06079 4.11209 4.15790 4.27909 4.35381 4.39467 4.46282 4.49269 4.55330 4.61532 4.68611 4.71555 4.80337 4.83332 4.91567 5.02616 5.12896 5.16953 5.40302 5.91806 6.02643 6.19465 6.53055 6.66163 6.69017 6.80250 7.30230 8.21939 8.86787 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.004817 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.310986 B = 5811.458762 C = 7308.999478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.207 4.207 3 C -0.038 4.038 4 C 0.140 3.860 5 N -0.495 5.495 6 C 0.150 3.850 7 C -0.186 4.186 8 C 0.575 3.425 9 O -0.559 6.559 10 N -0.602 5.602 11 C 0.084 3.916 12 C 0.044 3.956 13 O -0.361 6.361 14 C 0.080 3.920 15 C 0.099 3.901 16 N -0.646 5.646 17 C -0.294 4.294 18 H 0.041 0.959 19 C -0.083 4.083 20 N -0.967 5.967 21 Si 1.099 2.901 22 H -0.275 1.275 23 H -0.241 1.241 24 H -0.301 1.301 25 C 0.112 3.888 26 C 0.092 3.908 27 C -0.028 4.028 28 H 0.262 0.738 29 H 0.188 0.812 30 H 0.170 0.830 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.131 0.869 34 H 0.041 0.959 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.244 0.756 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 -0.130 24.437 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.208 4.208 3 C -0.040 4.040 4 C -0.017 4.017 5 N -0.202 5.202 6 C -0.007 4.007 7 C -0.191 4.191 8 C 0.363 3.637 9 O -0.438 6.438 10 N -0.334 5.334 11 C -0.037 4.037 12 C -0.033 4.033 13 O -0.279 6.279 14 C 0.038 3.962 15 C -0.027 4.027 16 N -0.373 5.373 17 C -0.421 4.421 18 H 0.059 0.941 19 C -0.274 4.274 20 N -0.611 5.611 21 Si 0.923 3.077 22 H -0.202 1.202 23 H -0.165 1.165 24 H -0.229 1.229 25 C -0.013 4.013 26 C -0.031 4.031 27 C -0.053 4.053 28 H 0.278 0.722 29 H 0.205 0.795 30 H 0.188 0.812 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.965 -0.061 24.169 24.674 hybrid contribution 1.828 0.274 -0.601 1.943 sum -3.138 0.213 23.568 23.777 Atomic orbital electron populations 1.25865 0.96455 0.95464 0.95414 1.19700 0.91701 1.04865 1.04500 1.16895 0.89036 0.94605 1.03483 1.23598 0.89343 0.98086 0.90699 1.67827 1.08450 1.29824 1.14115 1.23093 1.01263 0.86182 0.90179 1.20733 0.94686 0.95578 1.08091 1.18134 0.83540 0.82263 0.79717 1.90782 1.29697 1.75548 1.47821 1.48123 1.25874 1.26324 1.33061 1.22404 0.97411 0.88044 0.95882 1.23162 0.86152 1.03676 0.90270 1.87957 1.34181 1.40224 1.65538 1.22782 0.94007 0.86435 0.92945 1.23042 0.96197 0.96346 0.87141 1.45985 1.29109 1.61306 1.00949 1.19875 1.01855 1.38595 0.81771 0.94126 1.27240 1.06303 0.99913 0.93973 1.71019 1.27509 1.50304 1.12313 0.83399 0.71335 0.77434 0.75540 1.20164 1.16533 1.22888 1.22949 0.93152 0.95887 0.89338 1.22717 0.87351 1.05303 0.87725 1.22170 0.91899 0.99466 0.91804 0.72165 0.79527 0.81248 0.88035 0.87574 0.85151 0.94011 0.94806 0.92463 0.94637 0.89247 0.92472 0.87007 0.86470 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 19.25 74.32 1.43 0.15 16 2 C -0.21 -3.33 13.27 30.01 0.40 -2.93 16 3 C -0.04 -0.69 5.73 -21.35 -0.12 -0.82 16 4 C 0.14 2.59 10.90 85.04 0.93 3.52 16 5 N -0.49 -10.97 10.33 -193.76 -2.00 -12.97 16 6 C 0.15 3.35 10.84 85.03 0.92 4.27 16 7 C -0.19 -4.02 5.22 -20.03 -0.10 -4.13 16 8 C 0.57 14.00 7.35 86.79 0.64 14.63 16 9 O -0.56 -16.62 16.47 -3.88 -0.06 -16.69 16 10 N -0.60 -13.35 3.03 -821.37 -2.49 -15.83 16 11 C 0.08 1.71 6.58 86.33 0.57 2.28 16 12 C 0.04 1.09 6.90 72.06 0.50 1.58 16 13 O -0.36 -11.96 10.55 -148.98 -1.57 -13.53 16 14 C 0.08 2.53 1.29 -10.82 -0.01 2.52 16 15 C 0.10 3.78 7.90 83.33 0.66 4.44 16 16 N -0.65 -31.15 3.62 -738.64 -2.68 -33.82 16 17 C -0.29 -17.39 11.03 84.03 0.93 -16.46 16 18 H 0.04 2.65 8.06 -2.91 -0.02 2.62 16 19 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 20 N -0.97 -63.15 13.70 21.65 0.30 -62.85 16 21 Si 1.10 51.39 25.51 68.60 1.75 53.14 16 22 H -0.28 -12.10 6.97 99.48 0.69 -11.40 16 23 H -0.24 -9.50 5.65 99.48 0.56 -8.93 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 C 0.11 4.20 5.04 83.42 0.42 4.62 16 26 C 0.09 1.98 4.41 86.14 0.38 2.36 16 27 C -0.03 -0.51 7.20 22.99 0.17 -0.34 16 28 H 0.26 0.62 7.80 -4.42 -0.03 0.59 16 29 H 0.19 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 2.14 7.09 -2.38 -0.02 2.12 16 33 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.04 1.15 7.30 -2.39 -0.02 1.13 16 35 H 0.03 1.37 7.36 -2.39 -0.02 1.35 16 36 H 0.06 2.02 7.93 -2.39 -0.02 2.00 16 37 H 0.24 16.16 8.73 -92.71 -0.81 15.35 16 38 H 0.09 2.88 6.94 -2.39 -0.02 2.86 16 39 H 0.06 2.28 6.28 -2.39 -0.01 2.26 16 40 H 0.11 2.23 4.31 -2.39 -0.01 2.22 16 41 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.17 2.32 6.50 -2.91 -0.02 2.30 16 Total: -1.00 -80.82 350.20 2.26 -78.56 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.86 Total: 12.81 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 8.16 Total: 11.20 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -6.87 Total: -125.49 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.64 Total: -30.21 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 1.75 Total: 53.14 kcal Total: -80.82 2.26 -78.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053421829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.388 kcal (2) G-P(sol) polarization free energy of solvation -80.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds