Wall clock time and date at job start Tue Mar 31 2020 16:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39728 * 119.58763 * 195.57358 * 3 2 1 5 5 C 1.37977 * 119.20091 * 179.70286 * 4 3 2 6 6 C 1.40241 * 118.39893 * 0.51159 * 5 4 3 7 7 C 1.47664 * 120.44133 * 179.78262 * 6 5 4 8 8 O 1.21585 * 119.99893 * 217.92932 * 7 6 5 9 9 N 1.34765 * 120.00170 * 37.92416 * 7 6 5 10 10 C 1.47130 * 121.06438 * 185.57836 * 9 7 6 11 11 C 1.53223 * 108.73226 * 232.32279 * 10 9 7 12 12 O 1.43129 * 109.34767 * 305.80404 * 11 10 9 13 13 C 1.42357 * 113.99457 * 59.77719 * 12 11 10 14 14 C 1.52929 * 114.29634 * 74.95748 * 13 12 11 15 15 N 1.47169 * 87.84201 * 88.27316 * 14 13 12 16 16 C 1.36935 * 135.99730 * 206.63957 * 15 14 13 17 17 H 1.08006 * 120.00052 * 353.48319 * 16 15 14 18 18 C 1.38812 * 119.99928 * 173.47845 * 16 15 14 19 19 N 1.31621 * 119.99907 * 178.48589 * 18 16 15 20 20 Si 1.86798 * 120.00320 * 358.49473 * 18 16 15 21 21 H 1.48489 * 109.47533 * 180.78190 * 20 18 16 22 22 H 1.48507 * 109.46816 * 300.78359 * 20 18 16 23 23 H 1.48498 * 109.46948 * 60.77974 * 20 18 16 24 24 C 1.47177 * 88.00468 * 26.89979 * 15 14 13 25 25 C 1.47359 * 121.06400 * 5.60541 * 9 7 6 26 26 C 1.39658 * 119.11595 * 359.50945 * 6 5 4 27 27 N 1.31482 * 120.71603 * 0.22607 * 26 6 5 28 28 H 4.51257 * 14.17519 * 0.02562 * 4 2 1 29 29 H 1.08002 * 120.40121 * 359.97438 * 4 3 2 30 30 H 1.07996 * 120.80063 * 180.27169 * 5 4 3 31 31 H 1.09007 * 109.59381 * 112.54734 * 10 9 7 32 32 H 1.09003 * 109.59542 * 352.09785 * 10 9 7 33 33 H 1.08998 * 109.49608 * 185.83973 * 11 10 9 34 34 H 1.09006 * 109.49182 * 65.75827 * 11 10 9 35 35 H 1.08995 * 113.49218 * 333.52772 * 14 13 12 36 36 H 1.09002 * 113.54392 * 203.02441 * 14 13 12 37 37 H 0.96996 * 120.00069 * 354.94051 * 19 18 16 38 38 H 1.09001 * 113.49150 * 87.84460 * 24 15 14 39 39 H 1.09004 * 113.48742 * 218.34854 * 24 15 14 40 40 H 1.09003 * 109.73883 * 12.08607 * 25 9 7 41 41 H 1.08996 * 109.74900 * 251.36746 * 25 9 7 42 42 H 1.08002 * 119.64756 * 180.25127 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2954 1.1714 0.3262 5 6 4.6751 1.1614 0.3297 6 6 5.3343 -0.0296 -0.0074 7 6 6.8097 -0.0896 -0.0227 8 8 7.3829 -0.7360 -0.8782 9 7 7.5208 0.5721 0.9114 10 6 8.9896 0.6292 0.8482 11 6 9.5581 0.1778 2.1975 12 8 8.9758 0.9620 3.2437 13 6 7.5581 0.8598 3.3232 14 6 7.0547 -0.4529 3.9249 15 7 7.1465 0.1833 5.2488 16 6 7.3320 -0.2444 6.5364 17 1 7.3471 -1.3015 6.7575 18 6 7.5009 0.6807 7.5574 19 7 7.6494 0.2705 8.7992 20 14 7.5172 2.5078 7.1692 21 1 7.7300 3.2780 8.4208 22 1 8.6161 2.8012 6.2145 23 1 6.2183 2.8967 6.5635 24 6 6.9449 1.4801 4.5827 25 6 6.8521 1.2612 2.0292 26 6 4.5769 -1.1598 -0.3227 27 7 3.2630 -1.1126 -0.3099 28 1 -1.0500 -0.0011 0.0002 29 1 2.7548 2.0722 0.5769 30 1 5.2339 2.0504 0.5822 31 1 9.3071 1.6512 0.6412 32 1 9.3476 -0.0338 0.0605 33 1 10.6396 0.3134 2.2003 34 1 9.3227 -0.8744 2.3578 35 1 7.7467 -1.2847 3.7936 36 1 6.0347 -0.7029 3.6328 37 1 7.5677 -0.6724 9.0116 38 1 5.8953 1.7505 4.4670 39 1 7.5440 2.2850 5.0086 40 1 5.8049 0.9616 2.0728 41 1 6.9216 2.3402 1.8912 42 1 5.0757 -2.0826 -0.5796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053512505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:53 Heat of formation + Delta-G solvation = 110.545716 kcal Electronic energy + Delta-G solvation = -27886.989748 eV Core-core repulsion = 24030.408645 eV Total energy + Delta-G solvation = -3856.581104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30075 -40.20279 -38.95508 -36.60505 -35.09138 -34.23256 -33.03825 -32.48542 -31.24259 -30.30928 -28.33474 -26.32502 -25.76839 -25.30916 -24.20508 -23.09867 -21.69479 -20.13628 -19.85238 -19.15329 -17.91599 -17.50853 -17.09842 -16.73416 -16.28631 -16.13868 -15.82264 -15.05475 -14.93053 -14.71458 -14.49628 -14.32447 -14.01588 -13.90899 -13.61223 -13.37418 -13.20023 -12.94873 -12.82269 -12.33434 -11.82887 -11.61533 -11.51103 -11.22818 -11.20548 -10.85806 -10.62067 -10.60655 -10.43041 -10.19082 -9.91579 -9.81146 -9.21904 -9.15655 -9.11382 -9.00740 -8.59494 -7.21100 -6.34209 -3.27291 0.02816 0.80261 2.16777 2.25396 2.52256 2.80632 3.35329 3.44212 3.51004 3.60804 3.62492 3.74295 4.03919 4.29764 4.36450 4.47197 4.57257 4.61849 4.63694 4.74076 4.77178 4.82777 5.02798 5.17292 5.18453 5.29988 5.37258 5.40886 5.45435 5.55781 5.61637 5.63936 5.75708 5.95141 5.97358 6.07347 6.08784 6.17901 6.22492 6.36329 6.99108 7.02746 7.05266 7.43774 7.43857 7.80299 8.19973 8.93438 9.45241 10.27547 11.18043 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.004154 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.414486 B = 6739.090158 C = 8260.072188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.154 4.154 3 C 0.247 3.753 4 C -0.150 4.150 5 C -0.043 4.043 6 C -0.176 4.176 7 C 0.570 3.430 8 O -0.532 6.532 9 N -0.603 5.603 10 C 0.079 3.921 11 C 0.046 3.954 12 O -0.333 6.333 13 C 0.059 3.941 14 C 0.105 3.895 15 N -0.615 5.615 16 C -0.303 4.303 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.934 5.934 20 Si 1.070 2.930 21 H -0.294 1.294 22 H -0.284 1.284 23 H -0.291 1.291 24 C 0.110 3.890 25 C 0.086 3.914 26 C 0.164 3.836 27 N -0.471 5.471 28 H 0.231 0.769 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.261 0.739 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 4.357 -20.818 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.154 4.154 3 C 0.112 3.888 4 C -0.170 4.170 5 C -0.068 4.068 6 C -0.182 4.182 7 C 0.358 3.642 8 O -0.410 6.410 9 N -0.336 5.336 10 C -0.043 4.043 11 C -0.032 4.032 12 O -0.250 6.250 13 C 0.017 3.983 14 C -0.022 4.022 15 N -0.343 5.343 16 C -0.428 4.428 17 H 0.100 0.900 18 C -0.220 4.220 19 N -0.576 5.576 20 Si 0.903 3.097 21 H -0.222 1.222 22 H -0.212 1.212 23 H -0.219 1.219 24 C -0.016 4.016 25 C -0.038 4.038 26 C 0.005 3.995 27 N -0.179 5.179 28 H 0.248 0.752 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.229 4.763 -20.391 22.153 hybrid contribution -0.145 -1.021 -0.569 1.178 sum -7.374 3.743 -20.961 22.533 Atomic orbital electron populations 1.24988 0.95657 0.97782 0.96348 1.19254 0.91023 1.02222 1.02934 1.16761 0.88282 0.89427 0.94290 1.22006 0.94293 0.99201 1.01458 1.21894 0.94284 0.97795 0.92870 1.21024 0.94648 0.96674 1.05806 1.17980 0.86214 0.78819 0.81234 1.90801 1.71399 1.41243 1.37541 1.48071 1.07342 1.52614 1.25612 1.22373 0.78860 1.03227 0.99880 1.22960 0.98571 0.95896 0.85751 1.88007 1.17670 1.67249 1.52121 1.23097 0.82607 0.99938 0.92692 1.22803 0.97954 0.94908 0.86515 1.45816 1.84679 1.01704 1.02064 1.20133 1.48228 0.94178 0.80306 0.90022 1.25724 0.98604 1.05268 0.92370 1.70914 1.51451 1.17668 1.17556 0.83746 0.76248 0.75710 0.74009 1.22176 1.21194 1.21863 1.22828 0.97638 0.92771 0.88359 1.22676 0.98028 0.97626 0.85462 1.22886 0.88012 0.97596 0.91031 1.67842 1.09529 1.26865 1.13624 0.75199 0.83361 0.83123 0.90239 0.87899 0.87460 0.92408 0.93221 0.93954 0.92903 0.92417 0.91470 0.88147 0.89834 0.81093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 19.25 29.55 0.57 -0.41 16 2 C -0.15 -1.61 13.43 -38.84 -0.52 -2.13 16 3 C 0.25 2.83 6.59 -84.91 -0.56 2.27 16 4 C -0.15 -1.37 9.77 -39.12 -0.38 -1.75 16 5 C -0.04 -0.39 7.54 -38.92 -0.29 -0.69 16 6 C -0.18 -2.02 5.19 -104.77 -0.54 -2.56 16 7 C 0.57 7.36 7.37 -12.42 -0.09 7.27 16 8 O -0.53 -8.21 16.37 5.29 0.09 -8.13 16 9 N -0.60 -7.36 3.03 -173.66 -0.53 -7.89 16 10 C 0.08 0.89 6.61 -3.58 -0.02 0.87 16 11 C 0.05 0.61 6.90 37.27 0.26 0.86 16 12 O -0.33 -5.86 10.55 -35.23 -0.37 -6.23 16 13 C 0.06 0.99 1.29 -90.67 -0.12 0.88 16 14 C 0.11 2.06 7.90 -8.19 -0.06 1.99 16 15 N -0.61 -15.02 3.68 -184.54 -0.68 -15.70 16 16 C -0.30 -8.75 11.09 -15.06 -0.17 -8.92 16 17 H 0.08 2.50 8.05 -52.48 -0.42 2.08 16 18 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 19 N -0.93 -29.49 13.70 55.49 0.76 -28.73 16 20 Si 1.07 26.48 25.03 -169.99 -4.25 22.23 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 22 H -0.28 -6.73 6.39 56.52 0.36 -6.36 16 23 H -0.29 -6.56 6.78 56.52 0.38 -6.17 16 24 C 0.11 2.22 5.57 -8.04 -0.04 2.17 16 25 C 0.09 1.04 4.17 -3.69 -0.02 1.03 16 26 C 0.16 1.96 10.78 -17.17 -0.19 1.77 16 27 N -0.47 -6.01 10.26 -10.78 -0.11 -6.12 16 28 H 0.23 0.74 7.80 -54.09 -0.42 0.32 16 29 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.15 1.07 6.34 -52.49 -0.33 0.73 16 31 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.10 1.14 7.05 -51.93 -0.37 0.78 16 33 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.82 7.30 -51.93 -0.38 0.44 16 35 H 0.05 1.00 7.36 -51.93 -0.38 0.62 16 36 H 0.04 0.78 7.93 -51.93 -0.41 0.37 16 37 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 38 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 39 H 0.07 1.45 3.75 -51.93 -0.19 1.25 16 40 H 0.10 1.13 4.82 -51.93 -0.25 0.88 16 41 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 42 H 0.17 1.85 8.04 -52.49 -0.42 1.43 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -36.56 349.42 -7.00 -43.56 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.89 Total: -0.19 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.28 Total: 1.93 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.55 Total: -58.44 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.29 Total: -14.36 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -4.25 Total: 22.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.56 -7.00 -43.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053512505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.105 kcal (2) G-P(sol) polarization free energy of solvation -36.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds