Wall clock time and date at job start Tue Mar 31 2020 16:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39728 * 119.58763 * 195.57358 * 3 2 1 5 5 C 1.37977 * 119.20091 * 179.70286 * 4 3 2 6 6 C 1.40241 * 118.39893 * 0.51159 * 5 4 3 7 7 C 1.47664 * 120.44133 * 179.78262 * 6 5 4 8 8 O 1.21585 * 119.99893 * 217.92932 * 7 6 5 9 9 N 1.34765 * 120.00170 * 37.92416 * 7 6 5 10 10 C 1.47130 * 121.06438 * 185.57836 * 9 7 6 11 11 C 1.53223 * 108.73226 * 232.32279 * 10 9 7 12 12 O 1.43129 * 109.34767 * 305.80404 * 11 10 9 13 13 C 1.42357 * 113.99457 * 59.77719 * 12 11 10 14 14 C 1.52929 * 114.29634 * 74.95748 * 13 12 11 15 15 N 1.47169 * 87.84201 * 88.27316 * 14 13 12 16 16 C 1.36935 * 135.99730 * 206.63957 * 15 14 13 17 17 H 1.08006 * 120.00052 * 353.48319 * 16 15 14 18 18 C 1.38812 * 119.99928 * 173.47845 * 16 15 14 19 19 N 1.31621 * 119.99907 * 178.48589 * 18 16 15 20 20 Si 1.86798 * 120.00320 * 358.49473 * 18 16 15 21 21 H 1.48489 * 109.47533 * 180.78190 * 20 18 16 22 22 H 1.48507 * 109.46816 * 300.78359 * 20 18 16 23 23 H 1.48498 * 109.46948 * 60.77974 * 20 18 16 24 24 C 1.47177 * 88.00468 * 26.89979 * 15 14 13 25 25 C 1.47359 * 121.06400 * 5.60541 * 9 7 6 26 26 C 1.39658 * 119.11595 * 359.50945 * 6 5 4 27 27 N 1.31482 * 120.71603 * 0.22607 * 26 6 5 28 28 H 4.51257 * 14.17519 * 0.02562 * 4 2 1 29 29 H 1.08002 * 120.40121 * 359.97438 * 4 3 2 30 30 H 1.07996 * 120.80063 * 180.27169 * 5 4 3 31 31 H 1.09007 * 109.59381 * 112.54734 * 10 9 7 32 32 H 1.09003 * 109.59542 * 352.09785 * 10 9 7 33 33 H 1.08998 * 109.49608 * 185.83973 * 11 10 9 34 34 H 1.09006 * 109.49182 * 65.75827 * 11 10 9 35 35 H 1.08995 * 113.49218 * 333.52772 * 14 13 12 36 36 H 1.09002 * 113.54392 * 203.02441 * 14 13 12 37 37 H 0.96996 * 120.00069 * 354.94051 * 19 18 16 38 38 H 1.09001 * 113.49150 * 87.84460 * 24 15 14 39 39 H 1.09004 * 113.48742 * 218.34854 * 24 15 14 40 40 H 1.09003 * 109.73883 * 12.08607 * 25 9 7 41 41 H 1.08996 * 109.74900 * 251.36746 * 25 9 7 42 42 H 1.08002 * 119.64756 * 180.25127 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2954 1.1714 0.3262 5 6 4.6751 1.1614 0.3297 6 6 5.3343 -0.0296 -0.0074 7 6 6.8097 -0.0896 -0.0227 8 8 7.3829 -0.7360 -0.8782 9 7 7.5208 0.5721 0.9114 10 6 8.9896 0.6292 0.8482 11 6 9.5581 0.1778 2.1975 12 8 8.9758 0.9620 3.2437 13 6 7.5581 0.8598 3.3232 14 6 7.0547 -0.4529 3.9249 15 7 7.1465 0.1833 5.2488 16 6 7.3320 -0.2444 6.5364 17 1 7.3471 -1.3015 6.7575 18 6 7.5009 0.6807 7.5574 19 7 7.6494 0.2705 8.7992 20 14 7.5172 2.5078 7.1692 21 1 7.7300 3.2780 8.4208 22 1 8.6161 2.8012 6.2145 23 1 6.2183 2.8967 6.5635 24 6 6.9449 1.4801 4.5827 25 6 6.8521 1.2612 2.0292 26 6 4.5769 -1.1598 -0.3227 27 7 3.2630 -1.1126 -0.3099 28 1 -1.0500 -0.0011 0.0002 29 1 2.7548 2.0722 0.5769 30 1 5.2339 2.0504 0.5822 31 1 9.3071 1.6512 0.6412 32 1 9.3476 -0.0338 0.0605 33 1 10.6396 0.3134 2.2003 34 1 9.3227 -0.8744 2.3578 35 1 7.7467 -1.2847 3.7936 36 1 6.0347 -0.7029 3.6328 37 1 7.5677 -0.6724 9.0116 38 1 5.8953 1.7505 4.4670 39 1 7.5440 2.2850 5.0086 40 1 5.8049 0.9616 2.0728 41 1 6.9216 2.3402 1.8912 42 1 5.0757 -2.0826 -0.5796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053512505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:51 Heat of formation + Delta-G solvation = 82.874288 kcal Electronic energy + Delta-G solvation = -27888.189671 eV Core-core repulsion = 24030.408645 eV Total energy + Delta-G solvation = -3857.781027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.30006 -41.28190 -40.05337 -37.98182 -36.15343 -34.95510 -34.61143 -33.80523 -32.10457 -31.52532 -29.65905 -27.81888 -27.29298 -26.18853 -25.07939 -24.11898 -23.31718 -21.36469 -20.59312 -20.31899 -19.67714 -18.72510 -18.16438 -17.66325 -17.53733 -17.01588 -16.93590 -16.29614 -16.07399 -15.87650 -15.60275 -15.37455 -15.24664 -15.12222 -14.95329 -14.81151 -14.37094 -14.14447 -13.66503 -13.49244 -13.30450 -12.90380 -12.79234 -12.44611 -12.32226 -12.20287 -11.90455 -11.88278 -11.42448 -11.34894 -11.23754 -11.09990 -10.95112 -10.72736 -10.63657 -9.99364 -9.67637 -9.22004 -8.67027 -5.50412 -0.74211 0.06998 1.30994 1.38865 1.52957 1.58225 1.63462 1.71888 1.99489 2.48763 2.56691 2.85516 2.87459 2.89772 3.14481 3.16772 3.40699 3.55096 3.56634 3.69748 3.82080 3.90907 3.99862 4.13475 4.15653 4.36978 4.37557 4.47907 4.50015 4.53787 4.56031 4.60982 4.66113 4.70802 4.83080 4.86343 4.91148 4.99157 5.12850 5.20015 5.42714 5.91447 6.06777 6.20922 6.44262 6.66039 6.66088 6.84231 7.28762 8.20397 8.87853 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.004154 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.414486 B = 6739.090158 C = 8260.072188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.218 4.218 3 C 0.232 3.768 4 C -0.142 4.142 5 C -0.033 4.033 6 C -0.189 4.189 7 C 0.574 3.426 8 O -0.564 6.564 9 N -0.602 5.602 10 C 0.084 3.916 11 C 0.044 3.956 12 O -0.361 6.361 13 C 0.080 3.920 14 C 0.100 3.900 15 N -0.652 5.652 16 C -0.293 4.293 17 H 0.041 0.959 18 C -0.082 4.082 19 N -0.971 5.971 20 Si 1.111 2.889 21 H -0.306 1.306 22 H -0.268 1.268 23 H -0.250 1.250 24 C 0.101 3.899 25 C 0.095 3.905 26 C 0.151 3.849 27 N -0.501 5.501 28 H 0.271 0.729 29 H 0.180 0.820 30 H 0.182 0.818 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.039 0.961 35 H 0.031 0.969 36 H 0.061 0.939 37 H 0.244 0.756 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 7.676 -23.294 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.218 4.218 3 C 0.097 3.903 4 C -0.162 4.162 5 C -0.058 4.058 6 C -0.194 4.194 7 C 0.363 3.637 8 O -0.444 6.444 9 N -0.334 5.334 10 C -0.038 4.038 11 C -0.033 4.033 12 O -0.279 6.279 13 C 0.038 3.962 14 C -0.026 4.026 15 N -0.380 5.380 16 C -0.420 4.420 17 H 0.059 0.941 18 C -0.273 4.273 19 N -0.616 5.616 20 Si 0.936 3.064 21 H -0.234 1.234 22 H -0.195 1.195 23 H -0.174 1.174 24 C -0.023 4.023 25 C -0.028 4.028 26 C -0.008 4.008 27 N -0.210 5.210 28 H 0.287 0.713 29 H 0.197 0.803 30 H 0.199 0.801 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.148 0.852 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.898 8.067 -22.935 25.889 hybrid contribution 0.293 -2.230 0.137 2.254 sum -8.606 5.837 -22.798 25.057 Atomic orbital electron populations 1.25999 0.96386 0.94961 0.93304 1.19685 0.91696 1.04908 1.05560 1.17195 0.89201 0.89842 0.94020 1.22337 0.94319 0.99403 1.00101 1.22217 0.94458 0.97681 0.91481 1.20935 0.93687 0.97569 1.07229 1.18142 0.86726 0.78029 0.80829 1.90786 1.72138 1.42509 1.38938 1.48100 1.07696 1.52353 1.25291 1.22394 0.78352 1.04683 0.98321 1.23153 0.99851 0.94435 0.85864 1.87958 1.18100 1.67850 1.54030 1.22784 0.82826 0.96538 0.94024 1.23049 0.98608 0.96211 0.84776 1.45869 1.85445 1.05015 1.01696 1.19949 1.46437 0.92495 0.83107 0.94131 1.27205 0.98637 1.09749 0.91736 1.71027 1.54772 1.16545 1.19281 0.83314 0.78741 0.70352 0.73988 1.23419 1.19487 1.17417 1.23137 0.99651 0.90542 0.88961 1.22705 0.97737 0.99805 0.82593 1.22892 0.88137 0.98105 0.91678 1.67808 1.09861 1.28322 1.14984 0.71280 0.80289 0.80076 0.87631 0.87809 0.85230 0.94294 0.95026 0.92170 0.94694 0.88919 0.92222 0.86804 0.85763 0.81546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 19.25 74.32 1.43 0.36 16 2 C -0.22 -4.16 13.43 30.02 0.40 -3.75 16 3 C 0.23 4.97 6.59 40.58 0.27 5.24 16 4 C -0.14 -2.13 9.77 22.57 0.22 -1.91 16 5 C -0.03 -0.48 7.54 22.69 0.17 -0.31 16 6 C -0.19 -3.95 5.19 -19.96 -0.10 -4.05 16 7 C 0.57 13.67 7.37 86.73 0.64 14.31 16 8 O -0.56 -16.92 16.37 -3.98 -0.07 -16.98 16 9 N -0.60 -12.70 3.03 -821.61 -2.49 -15.18 16 10 C 0.08 1.65 6.61 86.33 0.57 2.22 16 11 C 0.04 1.07 6.90 72.06 0.50 1.57 16 12 O -0.36 -11.84 10.55 -148.98 -1.57 -13.41 16 13 C 0.08 2.47 1.29 -10.82 -0.01 2.45 16 14 C 0.10 3.80 7.90 83.33 0.66 4.46 16 15 N -0.65 -31.45 3.68 -738.65 -2.72 -34.16 16 16 C -0.29 -17.43 11.09 84.03 0.93 -16.50 16 17 H 0.04 2.66 8.05 -2.91 -0.02 2.63 16 18 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 19 N -0.97 -63.69 13.70 21.65 0.30 -63.40 16 20 Si 1.11 52.44 25.03 68.60 1.72 54.15 16 21 H -0.31 -14.88 7.11 99.48 0.71 -14.18 16 22 H -0.27 -11.83 6.39 99.48 0.64 -11.19 16 23 H -0.25 -9.98 6.78 99.48 0.67 -9.31 16 24 C 0.10 3.74 5.57 83.42 0.46 4.20 16 25 C 0.09 1.85 4.17 86.14 0.36 2.21 16 26 C 0.15 3.58 10.78 85.09 0.92 4.50 16 27 N -0.50 -12.70 10.26 -188.03 -1.93 -14.63 16 28 H 0.27 0.50 7.80 -4.42 -0.03 0.46 16 29 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 30 H 0.18 1.48 6.34 -2.91 -0.02 1.46 16 31 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.10 2.08 7.05 -2.39 -0.02 2.06 16 33 H 0.13 2.54 8.14 -2.39 -0.02 2.53 16 34 H 0.04 1.09 7.30 -2.38 -0.02 1.07 16 35 H 0.03 1.30 7.36 -2.39 -0.02 1.28 16 36 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 37 H 0.24 16.17 8.73 -92.71 -0.81 15.36 16 38 H 0.09 2.82 8.09 -2.39 -0.02 2.80 16 39 H 0.06 2.33 3.75 -2.38 -0.01 2.32 16 40 H 0.11 1.98 4.82 -2.39 -0.01 1.97 16 41 H 0.12 1.59 7.94 -2.39 -0.02 1.57 16 42 H 0.17 3.80 8.04 -2.91 -0.02 3.78 16 Total: -1.00 -85.41 349.42 2.04 -83.37 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.92 Total: 9.75 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 7.88 Total: 10.50 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -6.84 Total: -127.38 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.64 Total: -30.39 kcal Atomic # 14 Polarization: 52.44 SS G_CDS: 1.72 Total: 54.15 kcal Total: -85.41 2.04 -83.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053512505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.242 kcal (2) G-P(sol) polarization free energy of solvation -85.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds