Wall clock time and date at job start Tue Mar 31 2020 16:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46058 * 144.05183 * 3 2 1 5 5 C 1.38215 * 118.36741 * 179.72309 * 4 3 2 6 6 C 1.39491 * 119.20765 * 0.49435 * 5 4 3 7 7 C 1.47988 * 119.57102 * 179.77148 * 6 5 4 8 8 O 1.21547 * 119.99865 * 9.78163 * 7 6 5 9 9 N 1.34774 * 119.99970 * 189.78498 * 7 6 5 10 10 C 1.47129 * 121.04922 * 181.46426 * 9 7 6 11 11 C 1.53233 * 108.71292 * 232.25451 * 10 9 7 12 12 O 1.43108 * 109.34414 * 305.85717 * 11 10 9 13 13 C 1.42488 * 113.98708 * 59.95677 * 12 11 10 14 14 C 1.53458 * 113.76921 * 73.26707 * 13 12 11 15 15 N 1.47664 * 85.97523 * 91.26544 * 14 13 12 16 16 C 1.36939 * 134.45742 * 204.27195 * 15 14 13 17 17 H 1.08005 * 120.00246 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00106 * 0.02562 * 16 15 14 19 19 N 1.31618 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47114 * 60.00290 * 20 18 16 22 22 H 1.48497 * 109.46959 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46916 * 300.00180 * 20 18 16 24 24 C 1.47676 * 91.08713 * 24.29183 * 15 14 13 25 25 C 1.47335 * 121.05369 * 1.48227 * 9 7 6 26 26 N 1.32820 * 120.85944 * 359.48803 * 6 5 4 27 27 C 1.31299 * 121.78841 * 0.25879 * 26 6 5 28 28 H 4.52939 * 13.94584 * 359.97438 * 4 2 1 29 29 H 1.08005 * 120.81672 * 359.97223 * 4 3 2 30 30 H 1.08001 * 120.39495 * 180.26269 * 5 4 3 31 31 H 1.08997 * 109.59433 * 112.48916 * 10 9 7 32 32 H 1.09003 * 109.60029 * 352.02386 * 10 9 7 33 33 H 1.08993 * 109.49224 * 65.82005 * 11 10 9 34 34 H 1.09003 * 109.49124 * 185.90064 * 11 10 9 35 35 H 1.09001 * 113.78849 * 205.53097 * 14 13 12 36 36 H 1.08998 * 113.79509 * 337.00043 * 14 13 12 37 37 H 0.96995 * 120.00128 * 179.97438 * 19 18 16 38 38 H 1.08999 * 113.78735 * 221.43739 * 24 15 14 39 39 H 1.09003 * 113.89253 * 89.98428 * 24 15 14 40 40 H 1.08996 * 109.74411 * 251.24430 * 25 9 7 41 41 H 1.08999 * 109.74339 * 11.96070 * 25 9 7 42 42 H 1.08005 * 119.65001 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3152 0.9778 -0.7084 5 6 4.6964 0.9410 -0.6740 6 6 5.3327 -0.0667 0.0510 7 6 6.8112 -0.1167 0.0891 8 8 7.4622 0.8088 -0.3547 9 7 7.4359 -1.1885 0.6159 10 6 8.9038 -1.2485 0.6946 11 6 9.3769 -2.5606 0.0601 12 8 8.7003 -3.6583 0.6808 13 6 7.2821 -3.6127 0.5509 14 6 6.7791 -3.9467 -0.8599 15 7 6.7032 -5.3443 -0.3893 16 6 6.7363 -6.5668 -1.0053 17 1 6.6594 -7.4699 -0.4178 18 6 6.8687 -6.6456 -2.3849 19 7 6.9629 -5.5452 -3.1008 20 14 6.9146 -8.3133 -3.2251 21 1 5.6530 -9.0443 -2.9436 22 1 7.0617 -8.1252 -4.6908 23 1 8.0661 -9.0961 -2.7089 24 6 6.5768 -4.8952 1.0118 25 6 6.6704 -2.3372 1.1308 26 7 4.6288 -0.9785 0.7121 27 6 3.3158 -0.9750 0.7086 28 1 -1.0501 -0.0010 0.0001 29 1 2.7958 1.7441 -1.2648 30 1 5.2762 1.6814 -1.2052 31 1 9.2156 -1.2139 1.7384 32 1 9.3338 -0.4052 0.1541 33 1 9.1519 -2.5507 -1.0063 34 1 10.4520 -2.6675 0.2044 35 1 5.8092 -3.5089 -1.0960 36 1 7.5218 -3.7855 -1.6412 37 1 7.0558 -5.6002 -4.0647 38 1 7.1587 -5.4879 1.7177 39 1 5.5473 -4.7393 1.3343 40 1 6.7303 -2.3617 2.2188 41 1 5.6287 -2.2544 0.8205 42 1 2.7780 -1.7330 1.2587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053512711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:05 Heat of formation + Delta-G solvation = 109.673892 kcal Electronic energy + Delta-G solvation = -28003.304366 eV Core-core repulsion = 24146.685457 eV Total energy + Delta-G solvation = -3856.618909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.06680 -39.73652 -38.51506 -36.02080 -34.93240 -34.24551 -32.50442 -32.18862 -31.08550 -29.78192 -27.91912 -26.02387 -25.24704 -24.90553 -23.94563 -23.00021 -21.85084 -20.00067 -19.48056 -18.74441 -17.55818 -17.15453 -16.72873 -16.00846 -15.98521 -15.63363 -15.25276 -14.99757 -14.85660 -14.28982 -14.22055 -14.04734 -13.87635 -13.54646 -13.24834 -13.17260 -12.83662 -12.48538 -12.27673 -12.03027 -11.69788 -11.34011 -11.09127 -11.05540 -10.83421 -10.77580 -10.57592 -10.27509 -10.24501 -10.07721 -9.90275 -9.54954 -9.19284 -9.05716 -8.94001 -8.77499 -8.14545 -6.83458 -5.71454 -3.03458 0.11548 0.93224 2.30884 2.35867 2.91309 3.07788 3.42819 3.46516 3.47933 3.74534 3.75546 3.99163 4.20294 4.44938 4.48804 4.49934 4.79676 4.89066 5.08701 5.22257 5.27795 5.35957 5.38476 5.41245 5.50698 5.58900 5.65018 5.68730 5.81691 5.88406 6.01724 6.12206 6.20012 6.36501 6.41842 6.55483 6.57612 6.77013 7.04547 7.12543 7.24142 7.35866 7.50641 7.55247 7.92037 8.02613 8.13441 9.08414 9.75315 10.62662 11.45590 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.004316 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.217778 B = 6485.523191 C = 8117.325714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C -0.020 4.020 4 C -0.057 4.057 5 C -0.108 4.108 6 C 0.095 3.905 7 C 0.571 3.429 8 O -0.542 6.542 9 N -0.583 5.583 10 C 0.076 3.924 11 C 0.049 3.951 12 O -0.345 6.345 13 C 0.048 3.952 14 C 0.153 3.847 15 N -0.603 5.603 16 C -0.218 4.218 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.137 3.863 25 C 0.055 3.945 26 N -0.441 5.441 27 C 0.124 3.876 28 H 0.227 0.773 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.253 0.747 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.161 0.839 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 14.624 8.629 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C -0.023 4.023 4 C -0.082 4.082 5 C -0.128 4.128 6 C -0.042 4.042 7 C 0.358 3.642 8 O -0.420 6.420 9 N -0.314 5.314 10 C -0.047 4.047 11 C -0.028 4.028 12 O -0.263 6.263 13 C 0.006 3.994 14 C 0.027 3.973 15 N -0.329 5.329 16 C -0.346 4.346 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.011 3.989 25 C -0.068 4.068 26 N -0.152 5.152 27 C -0.036 4.036 28 H 0.244 0.756 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.176 0.824 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.980 14.100 8.667 17.962 hybrid contribution -0.782 -0.199 -1.152 1.407 sum -7.762 13.901 7.515 17.606 Atomic orbital electron populations 1.24948 0.95742 0.98309 0.98179 1.19650 0.91556 1.02141 1.02150 1.17121 0.88057 0.97473 0.99607 1.21672 0.93455 0.97081 0.96009 1.21999 0.94440 0.98468 0.97942 1.21297 0.94381 0.92551 0.95982 1.17773 0.85773 0.82474 0.78222 1.90763 1.65882 1.37133 1.48183 1.48014 1.07099 1.17763 1.58527 1.22381 0.79869 1.00305 1.02103 1.22853 0.97167 0.85252 0.97559 1.87906 1.17409 1.44783 1.76232 1.23749 0.81818 0.93830 1.00022 1.22631 0.97670 0.84175 0.92818 1.45756 1.85039 1.01505 1.00558 1.18958 1.43072 0.82694 0.89876 0.90200 1.24754 1.02534 0.97155 0.95948 1.69807 1.56295 1.25603 1.05347 0.86206 0.77903 0.83182 0.78511 1.21224 1.21632 1.21070 1.22473 0.96143 0.90288 0.90043 1.23816 1.01001 0.83219 0.98715 1.67607 1.07670 1.21297 1.18609 1.23185 0.89370 0.96077 0.94937 0.75595 0.83581 0.82745 0.90680 0.88366 0.92204 0.88162 0.95417 0.90784 0.93710 0.92775 0.93251 0.91490 0.82373 0.81244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 19.25 29.55 0.57 -0.60 16 2 C -0.15 -1.50 13.28 -38.84 -0.52 -2.02 16 3 C -0.02 -0.22 5.75 -106.68 -0.61 -0.83 16 4 C -0.06 -0.56 9.89 -38.93 -0.39 -0.95 16 5 C -0.11 -1.27 9.61 -39.12 -0.38 -1.65 16 6 C 0.09 1.35 6.63 -82.98 -0.55 0.80 16 7 C 0.57 9.36 7.68 -12.27 -0.09 9.27 16 8 O -0.54 -9.68 15.81 5.32 0.08 -9.60 16 9 N -0.58 -9.48 3.03 -173.49 -0.53 -10.01 16 10 C 0.08 1.12 6.60 -3.58 -0.02 1.10 16 11 C 0.05 0.83 6.88 37.28 0.26 1.08 16 12 O -0.35 -7.02 10.52 -35.23 -0.37 -7.39 16 13 C 0.05 0.95 1.21 -90.30 -0.11 0.84 16 14 C 0.15 3.73 6.65 -3.18 -0.02 3.71 16 15 N -0.60 -15.90 3.70 -180.31 -0.67 -16.57 16 16 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -28.04 11.39 55.49 0.63 -27.41 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.14 2.88 8.33 -3.17 -0.03 2.85 16 25 C 0.06 0.91 5.28 -3.64 -0.02 0.89 16 26 N -0.44 -5.99 6.01 -9.49 -0.06 -6.05 16 27 C 0.12 1.41 10.92 -17.15 -0.19 1.22 16 28 H 0.23 0.80 7.80 -54.09 -0.42 0.38 16 29 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.15 1.66 7.66 -52.49 -0.40 1.25 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.40 7.05 -51.93 -0.37 1.04 16 33 H 0.06 1.13 7.20 -51.93 -0.37 0.75 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.03 0.70 7.94 -51.93 -0.41 0.29 16 36 H 0.07 2.05 6.31 -51.93 -0.33 1.73 16 37 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.16 2.59 3.76 -88.08 -0.33 2.26 16 42 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -35.32 356.12 -8.05 -43.37 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.14 Total: 1.76 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -2.35 Total: 8.96 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.62 Total: -60.03 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.29 Total: -16.99 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.32 -8.05 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053512711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.045 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds