Wall clock time and date at job start Tue Mar 31 2020 16:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46058 * 144.05183 * 3 2 1 5 5 C 1.38215 * 118.36741 * 179.72309 * 4 3 2 6 6 C 1.39491 * 119.20765 * 0.49435 * 5 4 3 7 7 C 1.47988 * 119.57102 * 179.77148 * 6 5 4 8 8 O 1.21547 * 119.99865 * 9.78163 * 7 6 5 9 9 N 1.34774 * 119.99970 * 189.78498 * 7 6 5 10 10 C 1.47129 * 121.04922 * 181.46426 * 9 7 6 11 11 C 1.53233 * 108.71292 * 232.25451 * 10 9 7 12 12 O 1.43108 * 109.34414 * 305.85717 * 11 10 9 13 13 C 1.42488 * 113.98708 * 59.95677 * 12 11 10 14 14 C 1.53458 * 113.76921 * 73.26707 * 13 12 11 15 15 N 1.47664 * 85.97523 * 91.26544 * 14 13 12 16 16 C 1.36939 * 134.45742 * 204.27195 * 15 14 13 17 17 H 1.08005 * 120.00246 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00106 * 0.02562 * 16 15 14 19 19 N 1.31618 * 119.99938 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47114 * 60.00290 * 20 18 16 22 22 H 1.48497 * 109.46959 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46916 * 300.00180 * 20 18 16 24 24 C 1.47676 * 91.08713 * 24.29183 * 15 14 13 25 25 C 1.47335 * 121.05369 * 1.48227 * 9 7 6 26 26 N 1.32820 * 120.85944 * 359.48803 * 6 5 4 27 27 C 1.31299 * 121.78841 * 0.25879 * 26 6 5 28 28 H 4.52939 * 13.94584 * 359.97438 * 4 2 1 29 29 H 1.08005 * 120.81672 * 359.97223 * 4 3 2 30 30 H 1.08001 * 120.39495 * 180.26269 * 5 4 3 31 31 H 1.08997 * 109.59433 * 112.48916 * 10 9 7 32 32 H 1.09003 * 109.60029 * 352.02386 * 10 9 7 33 33 H 1.08993 * 109.49224 * 65.82005 * 11 10 9 34 34 H 1.09003 * 109.49124 * 185.90064 * 11 10 9 35 35 H 1.09001 * 113.78849 * 205.53097 * 14 13 12 36 36 H 1.08998 * 113.79509 * 337.00043 * 14 13 12 37 37 H 0.96995 * 120.00128 * 179.97438 * 19 18 16 38 38 H 1.08999 * 113.78735 * 221.43739 * 24 15 14 39 39 H 1.09003 * 113.89253 * 89.98428 * 24 15 14 40 40 H 1.08996 * 109.74411 * 251.24430 * 25 9 7 41 41 H 1.08999 * 109.74339 * 11.96070 * 25 9 7 42 42 H 1.08005 * 119.65001 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3152 0.9778 -0.7084 5 6 4.6964 0.9410 -0.6740 6 6 5.3327 -0.0667 0.0510 7 6 6.8112 -0.1167 0.0891 8 8 7.4622 0.8088 -0.3547 9 7 7.4359 -1.1885 0.6159 10 6 8.9038 -1.2485 0.6946 11 6 9.3769 -2.5606 0.0601 12 8 8.7003 -3.6583 0.6808 13 6 7.2821 -3.6127 0.5509 14 6 6.7791 -3.9467 -0.8599 15 7 6.7032 -5.3443 -0.3893 16 6 6.7363 -6.5668 -1.0053 17 1 6.6594 -7.4699 -0.4178 18 6 6.8687 -6.6456 -2.3849 19 7 6.9629 -5.5452 -3.1008 20 14 6.9146 -8.3133 -3.2251 21 1 5.6530 -9.0443 -2.9436 22 1 7.0617 -8.1252 -4.6908 23 1 8.0661 -9.0961 -2.7089 24 6 6.5768 -4.8952 1.0118 25 6 6.6704 -2.3372 1.1308 26 7 4.6288 -0.9785 0.7121 27 6 3.3158 -0.9750 0.7086 28 1 -1.0501 -0.0010 0.0001 29 1 2.7958 1.7441 -1.2648 30 1 5.2762 1.6814 -1.2052 31 1 9.2156 -1.2139 1.7384 32 1 9.3338 -0.4052 0.1541 33 1 9.1519 -2.5507 -1.0063 34 1 10.4520 -2.6675 0.2044 35 1 5.8092 -3.5089 -1.0960 36 1 7.5218 -3.7855 -1.6412 37 1 7.0558 -5.6002 -4.0647 38 1 7.1587 -5.4879 1.7177 39 1 5.5473 -4.7393 1.3343 40 1 6.7303 -2.3617 2.2188 41 1 5.6287 -2.2544 0.8205 42 1 2.7780 -1.7330 1.2587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053512711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:04 Heat of formation + Delta-G solvation = 86.097908 kcal Electronic energy + Delta-G solvation = -28004.326697 eV Core-core repulsion = 24146.685457 eV Total energy + Delta-G solvation = -3857.641240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.18972 -41.04626 -39.86427 -37.65922 -36.07742 -35.24344 -34.25596 -33.36360 -32.07344 -31.20651 -29.51048 -27.71932 -26.85308 -26.17241 -24.90594 -24.36219 -23.51067 -21.29595 -20.41543 -20.08798 -18.85308 -18.69013 -18.21581 -17.33142 -17.02768 -16.89332 -16.65695 -16.44483 -16.07048 -15.84966 -15.65151 -15.23585 -15.09128 -14.86537 -14.73541 -14.59684 -14.19932 -13.86426 -13.63778 -13.28942 -12.98926 -12.87523 -12.73438 -12.62947 -12.51587 -12.14989 -11.99789 -11.79905 -11.68861 -11.52180 -11.30338 -10.94949 -10.94306 -10.80580 -10.04623 -9.92005 -9.52936 -8.92129 -7.90049 -5.23860 -0.78732 0.08584 1.32332 1.43333 1.47839 1.53589 1.70897 1.74745 2.16664 2.46582 2.67004 2.83962 2.87228 3.24222 3.29361 3.37508 3.47845 3.72943 3.75811 3.81017 3.90577 3.95713 4.08190 4.22025 4.31024 4.53040 4.60036 4.67321 4.68236 4.72809 4.78711 4.83187 4.90265 4.95194 5.04354 5.11175 5.14134 5.26412 5.31815 5.46159 5.63335 5.89937 6.15968 6.36028 6.45344 6.56388 6.89272 6.91787 7.59868 8.53857 9.26469 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.004316 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.217778 B = 6485.523191 C = 8117.325714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.210 4.210 3 C -0.012 4.012 4 C -0.053 4.053 5 C -0.107 4.107 6 C 0.062 3.938 7 C 0.567 3.433 8 O -0.565 6.565 9 N -0.591 5.591 10 C 0.081 3.919 11 C 0.049 3.951 12 O -0.366 6.366 13 C 0.068 3.932 14 C 0.156 3.844 15 N -0.634 5.634 16 C -0.232 4.232 17 H 0.087 0.913 18 C -0.069 4.069 19 N -0.958 5.958 20 Si 0.980 3.020 21 H -0.273 1.273 22 H -0.296 1.296 23 H -0.277 1.277 24 C 0.138 3.862 25 C 0.067 3.933 26 N -0.455 5.455 27 C 0.113 3.887 28 H 0.265 0.735 29 H 0.176 0.824 30 H 0.160 0.840 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.027 0.973 34 H 0.130 0.870 35 H 0.016 0.984 36 H 0.030 0.970 37 H 0.246 0.754 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.165 0.835 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 14.915 10.093 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.210 4.210 3 C -0.014 4.014 4 C -0.078 4.078 5 C -0.127 4.127 6 C -0.073 4.073 7 C 0.355 3.645 8 O -0.445 6.445 9 N -0.322 5.322 10 C -0.041 4.041 11 C -0.028 4.028 12 O -0.284 6.284 13 C 0.026 3.974 14 C 0.030 3.970 15 N -0.360 5.360 16 C -0.360 4.360 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.607 5.607 20 Si 0.808 3.192 21 H -0.199 1.199 22 H -0.222 1.222 23 H -0.203 1.203 24 C 0.013 3.987 25 C -0.056 4.056 26 N -0.166 5.166 27 C -0.046 4.046 28 H 0.281 0.719 29 H 0.193 0.807 30 H 0.177 0.823 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.045 0.955 34 H 0.148 0.852 35 H 0.034 0.966 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.180 0.820 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.010 14.395 10.178 19.799 hybrid contribution -0.299 -0.247 -1.588 1.635 sum -9.309 14.147 8.590 18.989 Atomic orbital electron populations 1.25899 0.96445 0.95393 0.95067 1.19795 0.91823 1.04701 1.04720 1.17293 0.89086 0.96728 0.98301 1.21992 0.92638 0.97519 0.95681 1.22120 0.95396 0.97846 0.97386 1.21124 0.93346 0.94431 0.98432 1.18146 0.86865 0.82087 0.77414 1.90729 1.66738 1.37890 1.49124 1.48120 1.07650 1.17733 1.58657 1.22406 0.79373 0.98946 1.03398 1.23015 0.98597 0.85551 0.95654 1.87858 1.17590 1.46664 1.76322 1.23445 0.81991 0.95443 0.96499 1.22461 0.96047 0.84079 0.94449 1.46136 1.85321 1.01395 1.03148 1.19418 1.41928 0.84147 0.90476 0.89504 1.25639 1.02996 1.00773 0.96724 1.70034 1.57944 1.27781 1.04949 0.85127 0.78389 0.78928 0.76756 1.19890 1.22219 1.20272 1.22712 0.97917 0.90397 0.87669 1.23741 1.00908 0.81292 0.99651 1.67351 1.08747 1.21474 1.19063 1.23544 0.88733 0.96949 0.95419 0.71912 0.80651 0.82250 0.88113 0.87977 0.95456 0.85196 0.96634 0.95112 0.94526 0.92016 0.90226 0.89135 0.81951 0.79280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 19.25 74.32 1.43 0.17 16 2 C -0.21 -3.58 13.28 30.02 0.40 -3.18 16 3 C -0.01 -0.24 5.75 -21.20 -0.12 -0.36 16 4 C -0.05 -0.99 9.89 22.69 0.22 -0.77 16 5 C -0.11 -2.50 9.61 22.57 0.22 -2.28 16 6 C 0.06 1.79 6.63 41.88 0.28 2.07 16 7 C 0.57 18.89 7.68 86.83 0.67 19.55 16 8 O -0.57 -20.63 15.81 -3.86 -0.06 -20.69 16 9 N -0.59 -19.19 3.03 -821.09 -2.49 -21.67 16 10 C 0.08 2.35 6.60 86.34 0.57 2.92 16 11 C 0.05 1.66 6.88 72.06 0.50 2.15 16 12 O -0.37 -14.90 10.52 -148.98 -1.57 -16.47 16 13 C 0.07 2.72 1.21 -10.49 -0.01 2.71 16 14 C 0.16 7.92 6.65 86.30 0.57 8.49 16 15 N -0.63 -34.01 3.70 -729.24 -2.70 -36.71 16 16 C -0.23 -13.48 10.70 84.03 0.90 -12.58 16 17 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 19 N -0.96 -60.49 11.39 21.65 0.25 -60.24 16 20 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 C 0.14 5.69 8.33 86.30 0.72 6.41 16 25 C 0.07 2.15 5.28 86.18 0.45 2.60 16 26 N -0.46 -12.21 6.01 -183.93 -1.10 -13.31 16 27 C 0.11 2.47 10.92 85.18 0.93 3.40 16 28 H 0.26 0.52 7.80 -4.41 -0.03 0.48 16 29 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 30 H 0.16 3.44 7.66 -2.91 -0.02 3.42 16 31 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.10 2.91 7.05 -2.39 -0.02 2.89 16 33 H 0.03 1.09 7.20 -2.39 -0.02 1.07 16 34 H 0.13 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.02 0.83 7.94 -2.39 -0.02 0.81 16 36 H 0.03 1.81 6.31 -2.39 -0.02 1.80 16 37 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.08 2.84 8.09 -2.39 -0.02 2.82 16 40 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 41 H 0.16 5.25 3.76 -73.76 -0.28 4.97 16 42 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -79.63 356.12 3.33 -76.30 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.78 Total: 15.90 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 8.19 Total: 27.70 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -6.04 Total: -131.94 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.63 Total: -37.16 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -79.63 3.33 -76.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053512711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.398 kcal (2) G-P(sol) polarization free energy of solvation -79.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds