Wall clock time and date at job start Tue Mar 31 2020 16:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39732 * 119.59225 * 342.05837 * 3 2 1 5 5 C 1.37972 * 119.20069 * 179.97438 * 4 3 2 6 6 C 1.40236 * 118.40224 * 0.25832 * 5 4 3 7 7 C 1.47672 * 120.44240 * 179.74512 * 6 5 4 8 8 O 1.21575 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99937 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99667 * 180.02562 * 9 7 6 11 11 H 1.08994 * 110.45076 * 327.59460 * 10 9 7 12 12 C 1.54544 * 110.50992 * 90.34673 * 10 9 7 13 13 O 1.44634 * 105.03419 * 95.01342 * 12 10 9 14 14 C 1.43250 * 105.22434 * 39.02576 * 13 12 10 15 15 C 1.52887 * 115.83625 * 90.92175 * 14 13 12 16 16 N 1.47778 * 85.78311 * 94.51497 * 15 14 13 17 17 C 1.36936 * 134.40819 * 203.88046 * 16 15 14 18 18 H 1.07992 * 120.00715 * 179.97438 * 17 16 15 19 19 C 1.38822 * 119.99360 * 359.97438 * 17 16 15 20 20 N 1.31610 * 120.00014 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47013 * 60.00401 * 21 19 17 23 23 H 1.48499 * 109.46744 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46855 * 300.00152 * 21 19 17 25 25 C 1.47790 * 91.19602 * 23.87274 * 16 15 14 26 26 C 1.53469 * 106.25705 * 321.06477 * 14 13 12 27 27 C 1.39663 * 119.11576 * 359.49932 * 6 5 4 28 28 N 1.31479 * 120.71140 * 0.50651 * 27 6 5 29 29 H 4.51270 * 14.17578 * 0.02562 * 4 2 1 30 30 H 1.08002 * 120.39354 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.79550 * 179.97438 * 5 4 3 32 32 H 0.96994 * 119.99801 * 0.02562 * 9 7 6 33 33 H 1.08995 * 110.32962 * 213.90248 * 12 10 9 34 34 H 1.09002 * 110.33064 * 336.12600 * 12 10 9 35 35 H 1.09002 * 113.82202 * 208.73283 * 15 14 13 36 36 H 1.09000 * 113.82284 * 340.29933 * 15 14 13 37 37 H 0.97002 * 120.00164 * 179.97438 * 20 19 17 38 38 H 1.08998 * 113.82328 * 221.91334 * 25 16 15 39 39 H 1.08995 * 113.93305 * 90.35383 * 25 16 15 40 40 H 1.09002 * 110.57611 * 264.14974 * 26 14 13 41 41 H 1.09001 * 110.57342 * 141.27349 * 26 14 13 42 42 H 1.08005 * 119.64338 * 180.25628 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2965 -1.1550 0.3743 5 6 4.6762 -1.1456 0.3709 6 6 5.3342 0.0341 -0.0057 7 6 6.8096 0.0960 -0.0200 8 8 7.4620 -0.8798 0.2966 9 7 7.4328 1.2343 -0.3839 10 6 8.8965 1.2954 -0.3986 11 1 9.3121 0.6589 0.3825 12 6 9.4419 0.8832 -1.7846 13 8 9.6288 2.1267 -2.4992 14 6 10.1360 3.0473 -1.5260 15 6 11.6584 3.1167 -1.4044 16 7 11.5730 4.2505 -2.3484 17 6 12.4427 4.8262 -3.2357 18 1 12.1281 5.6722 -3.8286 19 6 13.7289 4.3222 -3.3730 20 7 14.1121 3.2909 -2.6508 21 14 14.9156 5.1080 -4.5829 22 1 15.1254 6.5317 -4.2167 23 1 16.2142 4.3889 -4.5403 24 1 14.3504 5.0275 -5.9537 25 6 10.1738 4.5149 -1.9525 26 6 9.3798 2.7549 -0.2229 27 6 4.5757 1.1481 -0.3721 28 7 3.2619 1.1005 -0.3565 29 1 -1.0501 -0.0011 -0.0002 30 1 2.7566 -2.0451 0.6620 31 1 5.2358 -2.0242 0.6559 32 1 6.9123 2.0129 -0.6361 33 1 10.3928 0.3614 -1.6775 34 1 8.7196 0.2530 -2.3036 35 1 12.0084 3.3965 -0.4107 36 1 12.1726 2.2449 -1.8088 37 1 15.0107 2.9385 -2.7470 38 1 9.5158 4.7470 -2.7898 39 1 10.0736 5.2167 -1.1246 40 1 8.5304 3.4291 -0.1133 41 1 10.0481 2.8365 0.6343 42 1 5.0738 2.0598 -0.6676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053985353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:06 Heat of formation + Delta-G solvation = 85.535647 kcal Electronic energy + Delta-G solvation = -26374.616992 eV Core-core repulsion = 22516.951370 eV Total energy + Delta-G solvation = -3857.665621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.09346 -40.12882 -38.98475 -36.20692 -34.62772 -34.28972 -32.99312 -32.09267 -31.61160 -30.11435 -28.10571 -25.90327 -25.56736 -24.88096 -24.08965 -22.40612 -21.44319 -20.84765 -19.84079 -19.02494 -18.28895 -17.28734 -16.72937 -16.42153 -16.20786 -15.42869 -15.38637 -15.26636 -15.08175 -14.63194 -14.37885 -14.10495 -13.89906 -13.58954 -13.47359 -13.02959 -13.00155 -12.75616 -11.94776 -11.75654 -11.59551 -11.50402 -11.36336 -11.26141 -11.10050 -10.83172 -10.64095 -10.46473 -10.43398 -10.31874 -9.88104 -9.78886 -9.54822 -9.43182 -9.27480 -8.82548 -8.75502 -6.87349 -5.73827 -3.05749 -0.13462 0.71960 2.07520 2.12691 2.81882 2.86442 3.37802 3.42312 3.46037 3.47388 3.55218 4.06551 4.22791 4.26287 4.38355 4.47800 4.53887 4.60881 4.66180 4.98742 5.02344 5.13804 5.20830 5.23450 5.30369 5.46635 5.54798 5.56653 5.60110 5.77867 5.92910 5.97391 5.99676 6.01945 6.32966 6.35136 6.46800 6.58247 6.92316 6.93674 7.19390 7.22802 7.28953 7.48768 7.66040 7.90357 8.00075 9.06554 9.73169 10.59472 11.43499 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031158 B = 0.002153 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.423103 B =13001.900482 C =13488.965085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.154 4.154 3 C 0.247 3.753 4 C -0.153 4.153 5 C -0.013 4.013 6 C -0.180 4.180 7 C 0.562 3.438 8 O -0.532 6.532 9 N -0.709 5.709 10 C 0.112 3.888 11 H 0.106 0.894 12 C 0.038 3.962 13 O -0.336 6.336 14 C 0.055 3.945 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.221 4.221 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.130 3.870 26 C -0.146 4.146 27 C 0.144 3.856 28 N -0.471 5.471 29 H 0.231 0.769 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.314 -8.309 9.174 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.155 4.155 3 C 0.112 3.888 4 C -0.173 4.173 5 C -0.039 4.039 6 C -0.185 4.185 7 C 0.348 3.652 8 O -0.409 6.409 9 N -0.361 5.361 10 C 0.007 3.993 11 H 0.124 0.876 12 C -0.040 4.040 13 O -0.254 6.254 14 C 0.013 3.987 15 C 0.026 3.974 16 N -0.331 5.331 17 C -0.348 4.348 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.004 3.996 26 C -0.185 4.185 27 C -0.016 4.016 28 N -0.179 5.179 29 H 0.248 0.752 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.973 -8.175 8.746 26.796 hybrid contribution 0.841 0.083 -0.293 0.895 sum -23.132 -8.091 8.453 25.923 Atomic orbital electron populations 1.25001 0.95667 0.97724 0.96341 1.19263 0.91032 1.02263 1.02958 1.16758 0.88244 0.89611 0.94161 1.22051 0.94404 0.99161 1.01642 1.21700 0.93551 0.97506 0.91147 1.21157 0.94773 0.96611 1.05923 1.17956 0.86559 0.83357 0.77317 1.90809 1.66712 1.35185 1.48205 1.46050 1.07710 1.14282 1.68022 1.22530 0.78814 0.98456 0.99471 0.87565 1.23807 1.00576 0.88516 0.91134 1.89025 1.84354 1.19997 1.32070 1.23803 0.96620 0.92450 0.85781 1.22607 0.88961 0.93077 0.92710 1.45824 1.09018 1.35223 1.43020 1.18945 0.91911 1.10972 1.13011 0.90250 1.24771 0.97214 0.98497 0.99951 1.69792 1.18669 1.25700 1.42770 0.86187 0.80343 0.78358 0.80798 1.21211 1.21570 1.21078 1.22499 0.88652 0.91109 0.97354 1.23091 1.01040 0.94064 1.00320 1.22993 0.88743 0.97343 0.92554 1.67758 1.09684 1.26624 1.13878 0.75195 0.83472 0.82691 0.76257 0.91009 0.89482 0.94661 0.90364 0.93615 0.92984 0.93513 0.90179 0.89030 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 19.25 29.55 0.57 -0.19 16 2 C -0.15 -1.34 13.43 -38.84 -0.52 -1.86 16 3 C 0.25 2.37 6.59 -84.91 -0.56 1.81 16 4 C -0.15 -1.17 9.77 -39.12 -0.38 -1.56 16 5 C -0.01 -0.11 9.70 -38.93 -0.38 -0.49 16 6 C -0.18 -1.73 5.89 -104.76 -0.62 -2.35 16 7 C 0.56 6.51 7.77 -12.41 -0.10 6.41 16 8 O -0.53 -7.84 16.06 5.30 0.09 -7.76 16 9 N -0.71 -7.52 5.04 -53.13 -0.27 -7.79 16 10 C 0.11 1.43 3.49 -66.20 -0.23 1.20 16 11 H 0.11 1.39 7.55 -51.93 -0.39 0.99 16 12 C 0.04 0.59 7.37 37.97 0.28 0.87 16 13 O -0.34 -6.49 11.44 -35.23 -0.40 -6.90 16 14 C 0.05 1.01 1.28 -90.66 -0.12 0.89 16 15 C 0.15 3.53 6.99 -3.40 -0.02 3.51 16 16 N -0.60 -15.69 3.71 -183.61 -0.68 -16.37 16 17 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 18 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.64 11.40 55.49 0.63 -27.01 16 21 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 25 C 0.13 2.62 8.47 -3.40 -0.03 2.59 16 26 C -0.15 -1.93 6.25 -25.57 -0.16 -2.09 16 27 C 0.14 1.29 10.70 -17.17 -0.18 1.11 16 28 N -0.47 -4.98 10.26 -10.78 -0.11 -5.09 16 29 H 0.23 0.36 7.80 -54.09 -0.42 -0.06 16 30 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.16 1.18 7.73 -52.49 -0.41 0.78 16 32 H 0.40 3.34 6.44 -40.82 -0.26 3.07 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 35 H 0.04 0.81 7.96 -51.93 -0.41 0.40 16 36 H 0.08 2.06 7.20 -51.93 -0.37 1.69 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.88 7.69 -51.93 -0.40 0.48 16 41 H 0.09 1.15 7.83 -51.93 -0.41 0.75 16 42 H 0.17 1.07 6.40 -52.48 -0.34 0.74 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -36.02 365.21 -8.04 -44.06 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.07 Total: 0.83 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.71 Total: 3.06 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.43 Total: -56.25 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.32 Total: -14.65 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.02 -8.04 -44.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053985353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.594 kcal (2) G-P(sol) polarization free energy of solvation -36.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds