Wall clock time and date at job start Tue Mar 31 2020 16:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39732 * 119.59225 * 342.05837 * 3 2 1 5 5 C 1.37972 * 119.20069 * 179.97438 * 4 3 2 6 6 C 1.40236 * 118.40224 * 0.25832 * 5 4 3 7 7 C 1.47672 * 120.44240 * 179.74512 * 6 5 4 8 8 O 1.21575 * 119.99780 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99937 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99667 * 180.02562 * 9 7 6 11 11 H 1.08994 * 110.45076 * 327.59460 * 10 9 7 12 12 C 1.54544 * 110.50992 * 90.34673 * 10 9 7 13 13 O 1.44634 * 105.03419 * 95.01342 * 12 10 9 14 14 C 1.43250 * 105.22434 * 39.02576 * 13 12 10 15 15 C 1.52887 * 115.83625 * 90.92175 * 14 13 12 16 16 N 1.47778 * 85.78311 * 94.51497 * 15 14 13 17 17 C 1.36936 * 134.40819 * 203.88046 * 16 15 14 18 18 H 1.07992 * 120.00715 * 179.97438 * 17 16 15 19 19 C 1.38822 * 119.99360 * 359.97438 * 17 16 15 20 20 N 1.31610 * 120.00014 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47013 * 60.00401 * 21 19 17 23 23 H 1.48499 * 109.46744 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46855 * 300.00152 * 21 19 17 25 25 C 1.47790 * 91.19602 * 23.87274 * 16 15 14 26 26 C 1.53469 * 106.25705 * 321.06477 * 14 13 12 27 27 C 1.39663 * 119.11576 * 359.49932 * 6 5 4 28 28 N 1.31479 * 120.71140 * 0.50651 * 27 6 5 29 29 H 4.51270 * 14.17578 * 0.02562 * 4 2 1 30 30 H 1.08002 * 120.39354 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.79550 * 179.97438 * 5 4 3 32 32 H 0.96994 * 119.99801 * 0.02562 * 9 7 6 33 33 H 1.08995 * 110.32962 * 213.90248 * 12 10 9 34 34 H 1.09002 * 110.33064 * 336.12600 * 12 10 9 35 35 H 1.09002 * 113.82202 * 208.73283 * 15 14 13 36 36 H 1.09000 * 113.82284 * 340.29933 * 15 14 13 37 37 H 0.97002 * 120.00164 * 179.97438 * 20 19 17 38 38 H 1.08998 * 113.82328 * 221.91334 * 25 16 15 39 39 H 1.08995 * 113.93305 * 90.35383 * 25 16 15 40 40 H 1.09002 * 110.57611 * 264.14974 * 26 14 13 41 41 H 1.09001 * 110.57342 * 141.27349 * 26 14 13 42 42 H 1.08005 * 119.64338 * 180.25628 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2965 -1.1550 0.3743 5 6 4.6762 -1.1456 0.3709 6 6 5.3342 0.0341 -0.0057 7 6 6.8096 0.0960 -0.0200 8 8 7.4620 -0.8798 0.2966 9 7 7.4328 1.2343 -0.3839 10 6 8.8965 1.2954 -0.3986 11 1 9.3121 0.6589 0.3825 12 6 9.4419 0.8832 -1.7846 13 8 9.6288 2.1267 -2.4992 14 6 10.1360 3.0473 -1.5260 15 6 11.6584 3.1167 -1.4044 16 7 11.5730 4.2505 -2.3484 17 6 12.4427 4.8262 -3.2357 18 1 12.1281 5.6722 -3.8286 19 6 13.7289 4.3222 -3.3730 20 7 14.1121 3.2909 -2.6508 21 14 14.9156 5.1080 -4.5829 22 1 15.1254 6.5317 -4.2167 23 1 16.2142 4.3889 -4.5403 24 1 14.3504 5.0275 -5.9537 25 6 10.1738 4.5149 -1.9525 26 6 9.3798 2.7549 -0.2229 27 6 4.5757 1.1481 -0.3721 28 7 3.2619 1.1005 -0.3565 29 1 -1.0501 -0.0011 -0.0002 30 1 2.7566 -2.0451 0.6620 31 1 5.2358 -2.0242 0.6559 32 1 6.9123 2.0129 -0.6361 33 1 10.3928 0.3614 -1.6775 34 1 8.7196 0.2530 -2.3036 35 1 12.0084 3.3965 -0.4107 36 1 12.1726 2.2449 -1.8088 37 1 15.0107 2.9385 -2.7470 38 1 9.5158 4.7470 -2.7898 39 1 10.0736 5.2167 -1.1246 40 1 8.5304 3.4291 -0.1133 41 1 10.0481 2.8365 0.6343 42 1 5.0738 2.0598 -0.6676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053985353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:05 Heat of formation + Delta-G solvation = 59.481825 kcal Electronic energy + Delta-G solvation = -26375.746770 eV Core-core repulsion = 22516.951370 eV Total energy + Delta-G solvation = -3858.795400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95037 -41.31160 -40.02803 -37.75091 -35.69627 -34.94985 -34.12822 -33.65458 -32.45936 -31.16463 -29.72043 -27.58027 -26.68266 -26.21397 -24.73607 -23.97833 -22.66641 -21.85486 -20.56757 -20.39082 -19.15372 -18.70007 -18.10156 -17.28837 -17.03911 -16.88369 -16.68244 -16.32352 -16.21350 -15.86622 -15.62838 -15.15173 -15.05159 -14.84784 -14.54466 -14.44849 -14.24898 -13.71764 -13.32706 -13.19592 -12.95756 -12.83125 -12.70228 -12.56384 -12.32918 -12.31938 -12.05323 -11.87918 -11.66854 -11.32545 -11.28558 -11.09643 -10.91136 -10.68051 -10.62601 -10.14794 -9.88829 -8.91448 -7.89509 -5.21983 -0.79937 0.09611 1.38261 1.43994 1.48151 1.53923 1.61942 1.93285 2.13197 2.47427 2.84984 2.87272 2.91214 3.28637 3.39614 3.47516 3.55375 3.59043 3.71353 3.73312 3.82592 3.94218 4.03127 4.08389 4.30954 4.50804 4.56678 4.67447 4.70117 4.75317 4.79789 4.88421 4.92475 4.95294 4.96493 5.03629 5.18720 5.27680 5.38459 5.42504 5.51978 5.93666 6.12247 6.38393 6.44540 6.64759 6.92272 7.03777 7.61466 8.55622 9.27270 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031158 B = 0.002153 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.423103 B =13001.900482 C =13488.965085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.218 4.218 3 C 0.237 3.763 4 C -0.148 4.148 5 C -0.015 4.015 6 C -0.192 4.192 7 C 0.567 3.433 8 O -0.567 6.567 9 N -0.698 5.698 10 C 0.126 3.874 11 H 0.107 0.893 12 C 0.034 3.966 13 O -0.364 6.364 14 C 0.074 3.926 15 C 0.146 3.854 16 N -0.641 5.641 17 C -0.233 4.233 18 H 0.083 0.917 19 C -0.071 4.071 20 N -0.955 5.955 21 Si 0.979 3.021 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.279 1.279 25 C 0.130 3.870 26 C -0.131 4.131 27 C 0.147 3.853 28 N -0.499 5.499 29 H 0.271 0.729 30 H 0.173 0.827 31 H 0.161 0.839 32 H 0.415 0.585 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.247 0.753 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.272 -7.657 9.877 29.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.219 4.219 3 C 0.103 3.897 4 C -0.168 4.168 5 C -0.041 4.041 6 C -0.197 4.197 7 C 0.355 3.645 8 O -0.447 6.447 9 N -0.350 5.350 10 C 0.021 3.979 11 H 0.125 0.875 12 C -0.044 4.044 13 O -0.282 6.282 14 C 0.033 3.967 15 C 0.020 3.980 16 N -0.368 5.368 17 C -0.361 4.361 18 H 0.101 0.899 19 C -0.264 4.264 20 N -0.604 5.604 21 Si 0.807 3.193 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.205 1.205 25 C 0.006 3.994 26 C -0.169 4.169 27 C -0.013 4.013 28 N -0.207 5.207 29 H 0.287 0.713 30 H 0.190 0.810 31 H 0.179 0.821 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.134 0.866 41 H 0.122 0.878 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -26.995 -7.490 9.454 29.567 hybrid contribution 1.580 -0.152 -0.529 1.673 sum -25.415 -7.641 8.925 27.999 Atomic orbital electron populations 1.25999 0.96370 0.94880 0.93201 1.19654 0.91647 1.04960 1.05628 1.17131 0.89182 0.89833 0.93558 1.22267 0.94002 0.99600 1.00881 1.21873 0.94061 0.97441 0.90678 1.21018 0.93466 0.97565 1.07665 1.18179 0.87210 0.82814 0.76321 1.90795 1.67585 1.36425 1.49923 1.45881 1.06759 1.14749 1.67636 1.22239 0.80044 0.98156 0.97511 0.87477 1.23921 1.00397 0.87292 0.92752 1.88995 1.84107 1.21428 1.33698 1.23402 0.93697 0.91514 0.88108 1.22583 0.92548 0.90969 0.91858 1.46256 1.11036 1.36208 1.43317 1.19369 0.92639 1.10730 1.13382 0.89915 1.25640 0.99106 0.99414 1.02204 1.69997 1.18516 1.27257 1.44606 0.85143 0.77728 0.77765 0.78655 1.19994 1.22051 1.20524 1.22747 0.85514 0.92842 0.98293 1.23004 1.01766 0.94760 0.97403 1.23283 0.88440 0.97825 0.91743 1.67794 1.10256 1.27539 1.15124 0.71292 0.81002 0.82131 0.74626 0.92466 0.88695 0.94557 0.94636 0.94383 0.92677 0.90299 0.86621 0.87779 0.79517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 19.25 74.32 1.43 0.66 16 2 C -0.22 -3.44 13.43 30.02 0.40 -3.04 16 3 C 0.24 4.32 6.59 40.59 0.27 4.59 16 4 C -0.15 -2.09 9.77 22.57 0.22 -1.87 16 5 C -0.01 -0.23 9.70 22.69 0.22 -0.01 16 6 C -0.19 -3.48 5.89 -19.96 -0.12 -3.59 16 7 C 0.57 12.43 7.77 86.74 0.67 13.10 16 8 O -0.57 -16.41 16.06 -3.95 -0.06 -16.47 16 9 N -0.70 -13.32 5.04 -440.27 -2.22 -15.54 16 10 C 0.13 3.02 3.49 46.11 0.16 3.18 16 11 H 0.11 2.66 7.55 -2.39 -0.02 2.64 16 12 C 0.03 1.05 7.37 72.51 0.53 1.59 16 13 O -0.36 -13.97 11.44 -148.98 -1.70 -15.68 16 14 C 0.07 2.66 1.28 -10.66 -0.01 2.64 16 15 C 0.15 6.94 6.99 86.10 0.60 7.55 16 16 N -0.64 -33.59 3.71 -741.10 -2.75 -36.33 16 17 C -0.23 -13.47 10.70 84.04 0.90 -12.57 16 18 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 19 C -0.07 -4.17 5.50 84.87 0.47 -3.71 16 20 N -0.95 -59.28 11.40 21.65 0.25 -59.03 16 21 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 25 C 0.13 5.07 8.47 86.09 0.73 5.79 16 26 C -0.13 -3.11 6.25 31.34 0.20 -2.91 16 27 C 0.15 2.43 10.70 85.09 0.91 3.34 16 28 N -0.50 -10.02 10.26 -188.02 -1.93 -11.95 16 29 H 0.27 -0.35 7.80 -4.41 -0.03 -0.39 16 30 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.16 2.34 7.73 -2.91 -0.02 2.31 16 32 H 0.42 5.65 6.44 -92.71 -0.60 5.06 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 2.74 8.06 -2.39 -0.02 2.72 16 35 H 0.04 1.70 7.96 -2.39 -0.02 1.68 16 36 H 0.04 1.97 7.20 -2.39 -0.02 1.95 16 37 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.12 2.00 7.69 -2.39 -0.02 1.98 16 41 H 0.10 2.32 7.83 -2.39 -0.02 2.30 16 42 H 0.19 1.99 6.40 -2.91 -0.02 1.97 16 Total: -1.00 -81.59 365.21 1.66 -79.93 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.46 Total: 11.27 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 7.58 Total: 14.74 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.65 Total: -122.86 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.77 Total: -32.15 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -81.59 1.66 -79.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053985353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.408 kcal (2) G-P(sol) polarization free energy of solvation -81.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds