Wall clock time and date at job start Tue Mar 31 2020 15:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35321 * 126.66861 * 2 1 4 4 C 1.42276 * 103.92191 * 180.08217 * 3 2 1 5 5 C 1.48319 * 126.93545 * 179.88610 * 4 3 2 6 6 O 1.21495 * 120.00473 * 359.70758 * 5 4 3 7 7 N 1.34782 * 119.99849 * 179.70865 * 5 4 3 8 8 C 1.46501 * 120.00096 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47405 * 179.97438 * 8 7 5 10 10 C 1.38258 * 120.02332 * 270.22002 * 9 8 7 11 11 C 1.38143 * 119.96364 * 180.23476 * 10 9 8 12 12 C 1.38449 * 120.10356 * 359.52277 * 11 10 9 13 13 C 1.38065 * 119.93194 * 0.25758 * 12 11 10 14 14 C 1.38148 * 120.01921 * 89.99621 * 9 8 7 15 15 C 1.50781 * 108.86152 * 179.97438 * 13 12 11 16 16 N 1.46634 * 107.70246 * 0.02562 * 15 13 12 17 17 C 1.36929 * 126.56839 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00070 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00426 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99648 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00072 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47141 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46759 * 120.00185 * 21 19 17 24 24 H 1.48503 * 109.47043 * 240.00236 * 21 19 17 25 25 C 1.46643 * 106.87045 * 359.97438 * 16 15 13 26 26 N 1.30987 * 106.12112 * 359.62229 * 4 3 2 27 27 O 1.20903 * 111.43971 * 0.24315 * 26 4 3 28 28 H 1.08999 * 109.47453 * 180.31998 * 1 2 3 29 29 H 1.09003 * 109.47318 * 300.32903 * 1 2 3 30 30 H 1.09003 * 109.46999 * 60.31967 * 1 2 3 31 31 H 1.07999 * 128.03324 * 359.94390 * 3 2 1 32 32 H 0.96997 * 120.00206 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.47248 * 59.99819 * 8 7 5 34 34 H 1.09003 * 109.47210 * 300.00035 * 8 7 5 35 35 H 1.07998 * 120.01283 * 0.03461 * 10 9 8 36 36 H 1.08002 * 119.95132 * 179.80781 * 11 10 9 37 37 H 1.08002 * 119.94394 * 0.03126 * 14 9 8 38 38 H 1.09000 * 109.81260 * 119.54868 * 15 13 12 39 39 H 1.08998 * 109.81519 * 240.45467 * 15 13 12 40 40 H 0.97001 * 119.99333 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.80797 * 240.45438 * 25 16 15 42 42 H 1.08999 * 109.81012 * 119.54608 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5353 -0.0020 5 6 4.9075 1.2840 -0.0052 6 8 4.9009 2.4989 -0.0117 7 7 6.0785 0.6166 -0.0008 8 6 7.3432 1.3560 -0.0034 9 6 8.4940 0.3832 0.0031 10 6 9.0180 -0.0605 1.2031 11 6 10.0761 -0.9486 1.2076 12 6 10.6065 -1.4029 0.0122 13 6 10.0803 -0.9633 -1.1862 14 6 9.0230 -0.0695 -1.1901 15 6 10.8388 -1.6094 -2.3179 16 7 11.8654 -2.4754 -1.7294 17 6 12.7718 -3.2442 -2.4094 18 1 12.7735 -3.2489 -3.4894 19 6 13.6893 -4.0169 -1.7106 20 7 13.6882 -4.0100 -0.3945 21 14 14.9253 -5.0662 -2.6383 22 1 14.7197 -4.8980 -4.0994 23 1 16.3025 -4.6412 -2.2806 24 1 14.7367 -6.4930 -2.2724 25 6 11.7363 -2.3596 -0.2733 26 7 3.4761 -0.7658 0.0054 27 8 2.3072 -1.0750 0.0065 28 1 -0.3634 -1.0276 0.0057 29 1 -0.3634 0.5189 0.8870 30 1 -0.3633 0.5089 -0.8929 31 1 2.0301 2.1271 -0.0008 32 1 6.0839 -0.3534 0.0048 33 1 7.3967 1.9875 0.8835 34 1 7.3982 1.9786 -0.8965 35 1 8.6024 0.2896 2.1364 36 1 10.4873 -1.2926 2.1451 37 1 8.6115 0.2749 -2.1274 38 1 10.1581 -2.2049 -2.9264 39 1 11.3100 -0.8423 -2.9323 40 1 14.3291 -4.5503 0.0938 41 1 12.6636 -1.9736 0.1502 42 1 11.5110 -3.3356 0.1564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054255672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:10 Heat of formation + Delta-G solvation = 83.551601 kcal Electronic energy + Delta-G solvation = -25852.343276 eV Core-core repulsion = 21994.591620 eV Total energy + Delta-G solvation = -3857.751656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.43517 -40.08106 -39.40146 -36.44320 -34.69849 -34.51094 -33.68850 -32.26449 -31.19922 -29.79071 -28.29051 -27.71547 -26.18340 -25.24612 -23.86965 -22.94589 -22.04952 -20.49728 -20.44194 -20.01299 -18.19383 -17.98060 -17.15801 -17.04305 -16.18975 -15.63944 -15.41911 -14.94491 -14.61307 -14.42816 -14.31916 -14.21518 -14.09536 -13.82265 -13.77817 -13.27938 -13.04788 -12.92521 -12.56884 -12.02364 -11.89076 -11.80978 -11.69670 -11.58150 -11.10139 -10.88113 -10.81496 -10.61193 -10.49848 -10.23583 -10.13265 -9.82573 -9.82523 -9.35569 -8.98840 -8.44994 -8.05820 -6.88041 -5.84036 -3.17296 0.77867 1.29008 1.51415 1.71822 2.54572 2.84209 2.88857 3.35698 3.40897 3.43729 3.64138 4.04910 4.20333 4.38617 4.54400 4.64749 4.72363 4.88071 4.88246 4.94152 5.10704 5.20907 5.27702 5.29625 5.41058 5.44920 5.53229 5.55011 5.58464 5.82600 5.99316 6.06853 6.08501 6.46588 6.51541 6.53300 6.72948 6.74743 7.02365 7.13862 7.30275 7.32091 7.50251 7.64328 7.66682 7.82627 8.10600 9.08890 9.68708 10.35664 11.30213 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.002108 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.162516 B =13279.238557 C =13855.883630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.034 4.034 3 C -0.186 4.186 4 C -0.025 4.025 5 C 0.597 3.403 6 O -0.526 6.526 7 N -0.706 5.706 8 C 0.170 3.830 9 C -0.135 4.135 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.079 4.079 13 C -0.107 4.107 14 C -0.082 4.082 15 C 0.175 3.825 16 N -0.601 5.601 17 C -0.226 4.226 18 H 0.084 0.916 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.918 3.082 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.205 3.795 26 N -0.329 5.329 27 O 0.123 5.877 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.181 0.819 32 H 0.410 0.590 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.822 9.727 3.318 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.208 4.208 4 C -0.184 4.184 5 C 0.381 3.619 6 O -0.401 6.401 7 N -0.358 5.358 8 C 0.048 3.952 9 C -0.136 4.136 10 C -0.120 4.120 11 C -0.130 4.130 12 C -0.080 4.080 13 C -0.107 4.107 14 C -0.101 4.101 15 C 0.050 3.950 16 N -0.327 5.327 17 C -0.353 4.353 18 H 0.102 0.898 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.748 3.252 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.081 3.919 26 N -0.030 5.030 27 O 0.047 5.953 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.198 0.802 32 H 0.246 0.754 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.677 9.470 3.338 25.718 hybrid contribution 0.398 -0.281 -0.357 0.604 sum -23.280 9.189 2.981 25.204 Atomic orbital electron populations 1.20389 0.83323 1.05034 1.04439 1.24539 0.96626 0.85427 1.03106 1.22426 0.89660 1.01595 1.07139 1.23522 0.96815 0.90184 1.07870 1.16881 0.81599 0.86338 0.77094 1.90803 1.86797 1.12434 1.50024 1.46077 1.05016 1.11297 1.73407 1.20208 0.79320 0.92528 1.03153 1.19413 0.98974 1.01550 0.93643 1.20825 0.96631 0.97694 0.96872 1.20501 0.96865 0.98310 0.97372 1.21568 0.97191 0.96268 0.92954 1.20725 0.95953 0.96985 0.97068 1.20303 0.95741 0.96900 0.97150 1.19708 0.90323 0.92701 0.92288 1.43964 1.36493 1.51078 1.01180 1.19031 1.07629 1.18075 0.90567 0.89774 1.24850 0.99543 1.00218 0.95825 1.69933 1.38474 1.43721 1.04870 0.85943 0.80747 0.79782 0.78680 1.20348 1.21603 1.21597 1.19752 0.91842 0.94655 0.85689 1.74220 0.97281 1.15556 1.15916 1.84802 1.11098 1.33491 1.65896 0.89543 0.88855 0.88847 0.80175 0.75442 0.90320 0.90316 0.86280 0.86025 0.86493 0.94573 0.94532 0.93497 0.91707 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.44 36.00 0.38 0.20 16 2 C -0.03 -0.24 7.47 -35.35 -0.26 -0.50 16 3 C -0.19 -1.62 10.92 -39.07 -0.43 -2.04 16 4 C -0.02 -0.29 7.19 -82.53 -0.59 -0.88 16 5 C 0.60 7.75 7.85 -12.11 -0.10 7.65 16 6 O -0.53 -8.00 16.95 5.37 0.09 -7.91 16 7 N -0.71 -8.52 5.55 -62.28 -0.35 -8.87 16 8 C 0.17 2.04 5.80 -5.20 -0.03 2.01 16 9 C -0.14 -1.87 5.25 -104.65 -0.55 -2.42 16 10 C -0.10 -1.44 9.70 -39.61 -0.38 -1.82 16 11 C -0.11 -1.87 10.05 -39.54 -0.40 -2.26 16 12 C -0.08 -1.58 6.22 -104.57 -0.65 -2.23 16 13 C -0.11 -2.04 6.22 -104.57 -0.65 -2.69 16 14 C -0.08 -1.28 9.70 -39.54 -0.38 -1.66 16 15 C 0.18 3.78 7.25 -5.08 -0.04 3.74 16 16 N -0.60 -15.60 3.41 -175.67 -0.60 -16.20 16 17 C -0.23 -6.25 10.32 -15.06 -0.16 -6.41 16 18 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -26.71 10.44 55.49 0.58 -26.13 16 21 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 C 0.20 5.04 5.39 -5.08 -0.03 5.01 16 26 N -0.33 -3.79 11.84 33.29 0.39 -3.39 16 27 O 0.12 1.17 11.18 17.25 0.19 1.36 16 28 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.41 4.83 8.22 -40.82 -0.34 4.50 16 33 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 34 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 41 H 0.07 1.74 7.49 -51.93 -0.39 1.35 16 42 H 0.07 1.74 7.49 -51.93 -0.39 1.35 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -32.65 363.97 -8.89 -41.55 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.30 Total: 1.94 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -4.36 Total: -4.62 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.03 Total: -54.59 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: 0.28 Total: -6.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.65 -8.89 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054255672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.097 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds