Wall clock time and date at job start Tue Mar 31 2020 15:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35321 * 126.66861 * 2 1 4 4 C 1.42276 * 103.92191 * 180.08217 * 3 2 1 5 5 C 1.48319 * 126.93545 * 179.88610 * 4 3 2 6 6 O 1.21495 * 120.00473 * 359.70758 * 5 4 3 7 7 N 1.34782 * 119.99849 * 179.70865 * 5 4 3 8 8 C 1.46501 * 120.00096 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47405 * 179.97438 * 8 7 5 10 10 C 1.38258 * 120.02332 * 270.22002 * 9 8 7 11 11 C 1.38143 * 119.96364 * 180.23476 * 10 9 8 12 12 C 1.38449 * 120.10356 * 359.52277 * 11 10 9 13 13 C 1.38065 * 119.93194 * 0.25758 * 12 11 10 14 14 C 1.38148 * 120.01921 * 89.99621 * 9 8 7 15 15 C 1.50781 * 108.86152 * 179.97438 * 13 12 11 16 16 N 1.46634 * 107.70246 * 0.02562 * 15 13 12 17 17 C 1.36929 * 126.56839 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00070 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00426 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99648 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00072 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47141 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46759 * 120.00185 * 21 19 17 24 24 H 1.48503 * 109.47043 * 240.00236 * 21 19 17 25 25 C 1.46643 * 106.87045 * 359.97438 * 16 15 13 26 26 N 1.30987 * 106.12112 * 359.62229 * 4 3 2 27 27 O 1.20903 * 111.43971 * 0.24315 * 26 4 3 28 28 H 1.08999 * 109.47453 * 180.31998 * 1 2 3 29 29 H 1.09003 * 109.47318 * 300.32903 * 1 2 3 30 30 H 1.09003 * 109.46999 * 60.31967 * 1 2 3 31 31 H 1.07999 * 128.03324 * 359.94390 * 3 2 1 32 32 H 0.96997 * 120.00206 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.47248 * 59.99819 * 8 7 5 34 34 H 1.09003 * 109.47210 * 300.00035 * 8 7 5 35 35 H 1.07998 * 120.01283 * 0.03461 * 10 9 8 36 36 H 1.08002 * 119.95132 * 179.80781 * 11 10 9 37 37 H 1.08002 * 119.94394 * 0.03126 * 14 9 8 38 38 H 1.09000 * 109.81260 * 119.54868 * 15 13 12 39 39 H 1.08998 * 109.81519 * 240.45467 * 15 13 12 40 40 H 0.97001 * 119.99333 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.80797 * 240.45438 * 25 16 15 42 42 H 1.08999 * 109.81012 * 119.54608 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5353 -0.0020 5 6 4.9075 1.2840 -0.0052 6 8 4.9009 2.4989 -0.0117 7 7 6.0785 0.6166 -0.0008 8 6 7.3432 1.3560 -0.0034 9 6 8.4940 0.3832 0.0031 10 6 9.0180 -0.0605 1.2031 11 6 10.0761 -0.9486 1.2076 12 6 10.6065 -1.4029 0.0122 13 6 10.0803 -0.9633 -1.1862 14 6 9.0230 -0.0695 -1.1901 15 6 10.8388 -1.6094 -2.3179 16 7 11.8654 -2.4754 -1.7294 17 6 12.7718 -3.2442 -2.4094 18 1 12.7735 -3.2489 -3.4894 19 6 13.6893 -4.0169 -1.7106 20 7 13.6882 -4.0100 -0.3945 21 14 14.9253 -5.0662 -2.6383 22 1 14.7197 -4.8980 -4.0994 23 1 16.3025 -4.6412 -2.2806 24 1 14.7367 -6.4930 -2.2724 25 6 11.7363 -2.3596 -0.2733 26 7 3.4761 -0.7658 0.0054 27 8 2.3072 -1.0750 0.0065 28 1 -0.3634 -1.0276 0.0057 29 1 -0.3634 0.5189 0.8870 30 1 -0.3633 0.5089 -0.8929 31 1 2.0301 2.1271 -0.0008 32 1 6.0839 -0.3534 0.0048 33 1 7.3967 1.9875 0.8835 34 1 7.3982 1.9786 -0.8965 35 1 8.6024 0.2896 2.1364 36 1 10.4873 -1.2926 2.1451 37 1 8.6115 0.2749 -2.1274 38 1 10.1581 -2.2049 -2.9264 39 1 11.3100 -0.8423 -2.9323 40 1 14.3291 -4.5503 0.0938 41 1 12.6636 -1.9736 0.1502 42 1 11.5110 -3.3356 0.1564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054255672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:09 Heat of formation + Delta-G solvation = 62.910012 kcal Electronic energy + Delta-G solvation = -25853.238362 eV Core-core repulsion = 21994.591620 eV Total energy + Delta-G solvation = -3858.646743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.15606 -41.31520 -40.62247 -37.95491 -35.93740 -35.19154 -34.41384 -34.02374 -32.53266 -31.45383 -29.19857 -28.69323 -27.80864 -26.67403 -24.94797 -23.75401 -23.55246 -22.14643 -21.57173 -21.14202 -19.03100 -18.92314 -18.69973 -17.99955 -17.28004 -17.14249 -16.62190 -16.24427 -16.10016 -15.98124 -15.78279 -15.23173 -14.97668 -14.74689 -14.54561 -14.44384 -13.95077 -13.70236 -13.53963 -13.50549 -13.36969 -13.31882 -13.11277 -13.05824 -12.75295 -12.42631 -12.07817 -12.02696 -11.86387 -11.72310 -11.60526 -11.58997 -10.95908 -10.40157 -10.32751 -9.77314 -9.64831 -8.88458 -7.95900 -5.33004 0.00768 0.19470 0.40157 0.66094 1.44511 1.46323 1.57045 1.81019 1.97847 2.08896 2.42649 2.71976 2.91712 3.26705 3.38627 3.50037 3.53661 3.73621 3.92557 3.94170 4.07246 4.14131 4.27277 4.33541 4.45202 4.58798 4.65122 4.72574 4.79447 4.80373 4.84424 4.85868 4.92409 5.10862 5.12733 5.26260 5.26751 5.28419 5.39197 5.48479 5.50745 5.81693 5.98858 6.06984 6.18422 6.80262 6.97852 7.01597 7.62456 8.30423 9.17571 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.002108 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.162516 B =13279.238557 C =13855.883630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.200 4.200 4 C -0.047 4.047 5 C 0.599 3.401 6 O -0.552 6.552 7 N -0.702 5.702 8 C 0.174 3.826 9 C -0.113 4.113 10 C -0.087 4.087 11 C -0.111 4.111 12 C -0.110 4.110 13 C -0.118 4.118 14 C -0.075 4.075 15 C 0.172 3.828 16 N -0.624 5.624 17 C -0.244 4.244 18 H 0.091 0.909 19 C -0.066 4.066 20 N -0.953 5.953 21 Si 0.989 3.011 22 H -0.262 1.262 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.221 3.779 26 N -0.352 5.352 27 O 0.120 5.880 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.195 0.805 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.251 0.749 41 H 0.025 0.975 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.778 11.074 3.156 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.223 4.223 4 C -0.205 4.205 5 C 0.384 3.616 6 O -0.429 6.429 7 N -0.354 5.354 8 C 0.052 3.948 9 C -0.114 4.114 10 C -0.106 4.106 11 C -0.129 4.129 12 C -0.111 4.111 13 C -0.118 4.118 14 C -0.094 4.094 15 C 0.047 3.953 16 N -0.351 5.351 17 C -0.372 4.372 18 H 0.109 0.891 19 C -0.259 4.259 20 N -0.601 5.601 21 Si 0.816 3.184 22 H -0.187 1.187 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.096 3.904 26 N -0.053 5.053 27 O 0.044 5.956 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.212 0.788 32 H 0.248 0.752 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -26.652 10.822 3.159 28.938 hybrid contribution 1.130 -0.631 -0.286 1.326 sum -25.521 10.191 2.873 27.630 Atomic orbital electron populations 1.20683 0.79869 1.06445 1.06144 1.25302 0.98134 0.84017 1.00279 1.22688 0.88773 1.02810 1.08041 1.23545 0.97169 0.90587 1.09216 1.17029 0.82122 0.86071 0.76390 1.90783 1.87239 1.13466 1.51413 1.46009 1.04898 1.11360 1.73085 1.20209 0.78377 0.91908 1.04282 1.19617 0.98560 1.00327 0.92878 1.21174 0.94960 0.95863 0.98566 1.20695 0.97295 0.98420 0.96513 1.21224 0.97290 0.97476 0.95089 1.20584 0.97379 0.98540 0.95338 1.20513 0.94306 0.95563 0.99023 1.19802 0.89768 0.92390 0.93361 1.44267 1.37212 1.51559 1.02047 1.19450 1.08180 1.18384 0.91211 0.89119 1.25794 1.01619 1.01729 0.96758 1.70163 1.39103 1.44447 1.06378 0.84860 0.77813 0.77538 0.78173 1.18659 1.21636 1.21630 1.19285 0.92212 0.93941 0.84962 1.74213 0.98402 1.15670 1.17057 1.84767 1.10869 1.34431 1.65538 0.88316 0.86949 0.87029 0.78793 0.75201 0.88965 0.89612 0.82701 0.84954 0.84153 0.94068 0.93969 0.93987 0.95676 0.95701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.10 10.44 71.23 0.74 0.65 16 2 C -0.01 -0.16 7.47 25.01 0.19 0.02 16 3 C -0.20 -3.11 10.92 22.60 0.25 -2.86 16 4 C -0.05 -1.03 7.19 42.96 0.31 -0.72 16 5 C 0.60 14.56 7.85 86.93 0.68 15.24 16 6 O -0.55 -15.90 16.95 -3.70 -0.06 -15.96 16 7 N -0.70 -15.31 5.55 -469.24 -2.60 -17.91 16 8 C 0.17 3.62 5.80 85.63 0.50 4.12 16 9 C -0.11 -2.80 5.25 -19.88 -0.10 -2.90 16 10 C -0.09 -2.21 9.70 22.25 0.22 -2.00 16 11 C -0.11 -3.61 10.05 22.30 0.22 -3.39 16 12 C -0.11 -4.54 6.22 -19.83 -0.12 -4.66 16 13 C -0.12 -4.50 6.22 -19.83 -0.12 -4.62 16 14 C -0.08 -2.19 9.70 22.30 0.22 -1.97 16 15 C 0.17 7.55 7.25 85.63 0.62 8.17 16 16 N -0.62 -33.98 3.41 -709.69 -2.42 -36.39 16 17 C -0.24 -14.03 10.32 84.04 0.87 -13.17 16 18 H 0.09 4.92 7.83 -2.91 -0.02 4.89 16 19 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 20 N -0.95 -58.06 10.44 21.65 0.23 -57.83 16 21 Si 0.99 45.99 29.55 68.60 2.03 48.01 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 25 C 0.22 11.63 5.39 85.63 0.46 12.09 16 26 N -0.35 -7.70 11.84 -49.52 -0.59 -8.29 16 27 O 0.12 2.08 11.18 71.89 0.80 2.88 16 28 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.41 8.85 8.22 -92.71 -0.76 8.09 16 33 H 0.09 1.76 8.09 -2.38 -0.02 1.74 16 34 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 35 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.03 1.47 7.49 -2.39 -0.02 1.46 16 42 H 0.03 1.46 7.49 -2.39 -0.02 1.44 16 Total: -1.00 -75.14 363.97 3.07 -72.06 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.30 Total: 12.76 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 5.39 Total: 0.66 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -5.38 Total: -120.43 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.74 Total: -13.08 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -75.14 3.07 -72.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054255672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.971 kcal (2) G-P(sol) polarization free energy of solvation -75.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds