Wall clock time and date at job start Tue Mar 31 2020 15:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29937 * 125.37965 * 2 1 4 4 C 1.36075 * 108.47981 * 180.02562 * 3 2 1 5 5 C 1.47420 * 126.44969 * 179.73820 * 4 3 2 6 6 O 1.21607 * 119.99795 * 180.02562 * 5 4 3 7 7 N 1.34772 * 119.99827 * 0.02719 * 5 4 3 8 8 C 1.46502 * 119.99562 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46723 * 179.97438 * 8 7 5 10 10 C 1.38253 * 120.01960 * 89.99866 * 9 8 7 11 11 C 1.38149 * 119.96049 * 179.97438 * 10 9 8 12 12 C 1.38450 * 120.10143 * 359.97438 * 11 10 9 13 13 C 1.38060 * 119.93584 * 0.02697 * 12 11 10 14 14 C 1.38151 * 120.01461 * 269.72142 * 9 8 7 15 15 C 1.50777 * 108.86198 * 180.02562 * 13 12 11 16 16 N 1.46643 * 107.70149 * 359.97438 * 15 13 12 17 17 C 1.36937 * 126.56147 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00150 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99587 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99886 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99948 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47304 * 59.99693 * 21 19 17 23 23 H 1.48501 * 109.46902 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46644 * 299.99526 * 21 19 17 25 25 C 1.46633 * 106.86885 * 0.02562 * 16 15 13 26 26 C 1.36096 * 107.09623 * 0.02562 * 4 3 2 27 27 O 1.34048 * 125.37919 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47449 * 89.99523 * 1 2 3 29 29 H 1.08994 * 109.47573 * 209.99750 * 1 2 3 30 30 H 1.09004 * 109.47317 * 329.99984 * 1 2 3 31 31 H 0.96996 * 120.00531 * 359.97438 * 7 5 4 32 32 H 1.08994 * 109.47009 * 299.99516 * 8 7 5 33 33 H 1.09001 * 109.47459 * 59.99998 * 8 7 5 34 34 H 1.07999 * 120.02086 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.94562 * 180.02562 * 11 10 9 36 36 H 1.07994 * 119.94910 * 0.02562 * 14 9 8 37 37 H 1.09002 * 109.81706 * 119.54140 * 15 13 12 38 38 H 1.09000 * 109.81474 * 240.44672 * 15 13 12 39 39 H 0.97008 * 119.99132 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.80801 * 240.44733 * 25 16 15 41 41 H 1.08997 * 109.81403 * 119.55153 * 25 16 15 42 42 H 1.08005 * 126.51605 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 -0.0006 5 6 4.7440 1.5438 -0.0062 6 8 5.8604 1.0618 -0.0066 7 7 4.5878 2.8825 -0.0109 8 6 5.7632 3.7569 -0.0170 9 6 5.3181 5.1967 -0.0220 10 6 5.1163 5.8625 1.1727 11 6 4.7087 7.1825 1.1667 12 6 4.5025 7.8400 -0.0341 13 6 4.7039 7.1751 -1.2272 14 6 5.1169 5.8537 -1.2206 15 6 4.4105 8.1183 -2.3664 16 7 4.0148 9.4065 -1.7881 17 6 3.6642 10.5367 -2.4772 18 1 3.6622 10.5319 -3.5571 19 6 3.3114 11.6885 -1.7876 20 7 3.3134 11.6942 -0.4714 21 14 2.8325 13.2302 -2.7275 22 1 1.6488 12.9441 -3.5774 23 1 2.5014 14.3129 -1.7667 24 1 3.9661 13.6588 -3.5857 25 6 4.0664 9.2525 -0.3308 26 6 3.5659 -0.6971 -0.0015 27 8 2.2830 -1.0929 -0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.6973 3.2670 -0.0109 32 1 6.3635 3.5650 0.8722 33 1 6.3593 3.5582 -0.9077 34 1 5.2772 5.3510 2.1102 35 1 4.5516 7.7024 2.1002 36 1 5.2785 5.3346 -2.1537 37 1 5.3028 8.2466 -2.9791 38 1 3.5976 7.7214 -2.9746 39 1 3.0665 12.4991 0.0105 40 1 3.0789 9.4312 0.0947 41 1 4.7838 9.9570 0.0900 42 1 4.4361 -1.3368 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054262331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:10 Heat of formation + Delta-G solvation = 43.630530 kcal Electronic energy + Delta-G solvation = -25921.904560 eV Core-core repulsion = 22062.421797 eV Total energy + Delta-G solvation = -3859.482764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.78508 -39.97443 -39.30957 -36.38405 -35.28344 -34.50222 -32.64173 -32.22879 -31.15474 -29.76084 -28.33490 -27.52538 -26.08662 -24.99804 -23.57877 -22.05160 -21.84032 -20.72245 -20.42213 -20.07904 -18.45330 -17.29276 -17.01853 -16.80150 -16.18922 -15.57771 -15.34689 -14.97574 -14.55581 -14.46615 -14.29590 -14.26730 -14.12343 -13.67704 -13.58906 -13.25275 -13.01295 -12.96330 -12.52383 -11.95319 -11.84342 -11.67307 -11.59353 -11.55183 -11.17611 -11.08553 -10.83387 -10.51306 -10.45323 -10.23399 -10.14983 -9.80044 -9.43771 -9.15667 -8.95753 -8.41067 -8.02470 -6.86241 -5.82323 -3.15645 0.76664 1.57029 1.65854 1.75572 2.20373 3.01360 3.06860 3.37570 3.41286 3.42869 3.53505 4.13719 4.40294 4.41256 4.50812 4.72839 4.85953 4.92227 4.97614 5.07463 5.24933 5.25351 5.31620 5.34996 5.42349 5.49312 5.58020 5.61450 5.75238 5.86513 6.02807 6.11189 6.21503 6.50132 6.54399 6.55537 6.76874 6.79305 7.05327 7.05472 7.32413 7.34693 7.40974 7.52041 7.67949 7.95505 8.12549 9.10489 9.70341 10.37549 11.31743 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002234 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.837588 B =12531.259992 C =13296.274429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.198 3.802 3 N -0.460 5.460 4 C -0.070 4.070 5 C 0.600 3.400 6 O -0.541 6.541 7 N -0.704 5.704 8 C 0.169 3.831 9 C -0.133 4.133 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.080 4.080 13 C -0.107 4.107 14 C -0.082 4.082 15 C 0.175 3.825 16 N -0.601 5.601 17 C -0.227 4.227 18 H 0.083 0.917 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.919 3.081 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.206 3.794 26 C 0.010 3.990 27 O -0.198 6.198 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.412 0.588 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.256 0.744 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 -24.417 3.525 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.011 4.011 3 N -0.191 5.191 4 C -0.190 4.190 5 C 0.386 3.614 6 O -0.419 6.419 7 N -0.354 5.354 8 C 0.047 3.953 9 C -0.134 4.134 10 C -0.120 4.120 11 C -0.131 4.131 12 C -0.081 4.081 13 C -0.107 4.107 14 C -0.101 4.101 15 C 0.050 3.950 16 N -0.327 5.327 17 C -0.354 4.354 18 H 0.101 0.899 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.748 3.252 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.210 1.210 25 C 0.081 3.919 26 C -0.064 4.064 27 O -0.084 6.084 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.248 0.752 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.964 -23.875 3.559 24.219 hybrid contribution -0.308 0.356 -0.398 0.617 sum -2.272 -23.519 3.160 23.839 Atomic orbital electron populations 1.20344 0.80736 1.05502 1.05114 1.26383 0.96726 0.78203 0.99813 1.70809 1.00693 1.29947 1.17680 1.21818 0.92182 0.93067 1.11940 1.16745 0.86127 0.81945 0.76624 1.90824 1.24260 1.75489 1.51350 1.45987 1.11249 1.04985 1.73207 1.20179 0.86880 0.85269 1.02955 1.19427 1.05719 0.94629 0.93583 1.20820 0.99839 0.94429 0.96941 1.20496 1.01148 0.94161 0.97269 1.21550 0.94729 0.98841 0.92956 1.20714 0.99065 0.93911 0.97048 1.20300 0.99461 0.93237 0.97106 1.19708 0.97437 0.85586 0.92292 1.43949 1.80080 1.07467 1.01214 1.18934 1.39089 0.86987 0.90416 0.89902 1.24841 1.01480 0.98199 0.95831 1.69919 1.53866 1.28154 1.05098 0.86097 0.78411 0.82221 0.78428 1.21008 1.21483 1.20998 1.19740 1.00342 0.86231 0.85572 1.25276 0.84832 0.95656 1.00589 1.84394 1.16729 1.37986 1.69307 0.88554 0.89100 0.87684 0.75152 0.90505 0.90523 0.86310 0.86087 0.86528 0.94573 0.94588 0.93410 0.91780 0.91766 0.75279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.20 1.69 8.30 -13.08 -0.11 1.58 16 3 N -0.46 -5.13 11.06 -7.65 -0.08 -5.21 16 4 C -0.07 -0.80 7.00 -83.02 -0.58 -1.38 16 5 C 0.60 7.76 7.81 -12.52 -0.10 7.66 16 6 O -0.54 -8.12 16.89 5.27 0.09 -8.03 16 7 N -0.70 -8.60 5.54 -62.56 -0.35 -8.95 16 8 C 0.17 2.07 5.80 -5.19 -0.03 2.04 16 9 C -0.13 -1.86 5.25 -104.65 -0.55 -2.41 16 10 C -0.10 -1.45 9.70 -39.61 -0.38 -1.83 16 11 C -0.11 -1.88 10.05 -39.54 -0.40 -2.27 16 12 C -0.08 -1.60 6.22 -104.57 -0.65 -2.25 16 13 C -0.11 -2.05 6.22 -104.57 -0.65 -2.70 16 14 C -0.08 -1.29 9.70 -39.54 -0.38 -1.67 16 15 C 0.18 3.78 7.25 -5.08 -0.04 3.74 16 16 N -0.60 -15.61 3.41 -175.67 -0.60 -16.21 16 17 C -0.23 -6.29 10.32 -15.06 -0.16 -6.44 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -26.69 10.45 55.49 0.58 -26.11 16 21 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.21 5.06 5.39 -5.08 -0.03 5.03 16 26 C 0.01 0.09 11.95 29.96 0.36 0.45 16 27 O -0.20 -1.69 10.73 6.52 0.07 -1.62 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.41 4.99 8.19 -40.82 -0.33 4.66 16 32 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.06 1.72 7.49 -51.93 -0.39 1.33 16 41 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 42 H 0.23 1.33 8.06 -52.48 -0.42 0.90 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -33.19 364.32 -8.54 -41.73 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.30 Total: 2.77 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.41 Total: -0.61 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.45 Total: -56.48 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.16 Total: -9.65 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.19 -8.54 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054262331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.364 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds