Wall clock time and date at job start Tue Mar 31 2020 15:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29937 * 125.37965 * 2 1 4 4 C 1.36075 * 108.47981 * 180.02562 * 3 2 1 5 5 C 1.47420 * 126.44969 * 179.73820 * 4 3 2 6 6 O 1.21607 * 119.99795 * 180.02562 * 5 4 3 7 7 N 1.34772 * 119.99827 * 0.02719 * 5 4 3 8 8 C 1.46502 * 119.99562 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46723 * 179.97438 * 8 7 5 10 10 C 1.38253 * 120.01960 * 89.99866 * 9 8 7 11 11 C 1.38149 * 119.96049 * 179.97438 * 10 9 8 12 12 C 1.38450 * 120.10143 * 359.97438 * 11 10 9 13 13 C 1.38060 * 119.93584 * 0.02697 * 12 11 10 14 14 C 1.38151 * 120.01461 * 269.72142 * 9 8 7 15 15 C 1.50777 * 108.86198 * 180.02562 * 13 12 11 16 16 N 1.46643 * 107.70149 * 359.97438 * 15 13 12 17 17 C 1.36937 * 126.56147 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00150 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99587 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99886 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99948 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47304 * 59.99693 * 21 19 17 23 23 H 1.48501 * 109.46902 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46644 * 299.99526 * 21 19 17 25 25 C 1.46633 * 106.86885 * 0.02562 * 16 15 13 26 26 C 1.36096 * 107.09623 * 0.02562 * 4 3 2 27 27 O 1.34048 * 125.37919 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47449 * 89.99523 * 1 2 3 29 29 H 1.08994 * 109.47573 * 209.99750 * 1 2 3 30 30 H 1.09004 * 109.47317 * 329.99984 * 1 2 3 31 31 H 0.96996 * 120.00531 * 359.97438 * 7 5 4 32 32 H 1.08994 * 109.47009 * 299.99516 * 8 7 5 33 33 H 1.09001 * 109.47459 * 59.99998 * 8 7 5 34 34 H 1.07999 * 120.02086 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.94562 * 180.02562 * 11 10 9 36 36 H 1.07994 * 119.94910 * 0.02562 * 14 9 8 37 37 H 1.09002 * 109.81706 * 119.54140 * 15 13 12 38 38 H 1.09000 * 109.81474 * 240.44672 * 15 13 12 39 39 H 0.97008 * 119.99132 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.80801 * 240.44733 * 25 16 15 41 41 H 1.08997 * 109.81403 * 119.55153 * 25 16 15 42 42 H 1.08005 * 126.51605 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 -0.0006 5 6 4.7440 1.5438 -0.0062 6 8 5.8604 1.0618 -0.0066 7 7 4.5878 2.8825 -0.0109 8 6 5.7632 3.7569 -0.0170 9 6 5.3181 5.1967 -0.0220 10 6 5.1163 5.8625 1.1727 11 6 4.7087 7.1825 1.1667 12 6 4.5025 7.8400 -0.0341 13 6 4.7039 7.1751 -1.2272 14 6 5.1169 5.8537 -1.2206 15 6 4.4105 8.1183 -2.3664 16 7 4.0148 9.4065 -1.7881 17 6 3.6642 10.5367 -2.4772 18 1 3.6622 10.5319 -3.5571 19 6 3.3114 11.6885 -1.7876 20 7 3.3134 11.6942 -0.4714 21 14 2.8325 13.2302 -2.7275 22 1 1.6488 12.9441 -3.5774 23 1 2.5014 14.3129 -1.7667 24 1 3.9661 13.6588 -3.5857 25 6 4.0664 9.2525 -0.3308 26 6 3.5659 -0.6971 -0.0015 27 8 2.2830 -1.0929 -0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.6973 3.2670 -0.0109 32 1 6.3635 3.5650 0.8722 33 1 6.3593 3.5582 -0.9077 34 1 5.2772 5.3510 2.1102 35 1 4.5516 7.7024 2.1002 36 1 5.2785 5.3346 -2.1537 37 1 5.3028 8.2466 -2.9791 38 1 3.5976 7.7214 -2.9746 39 1 3.0665 12.4991 0.0105 40 1 3.0789 9.4312 0.0947 41 1 4.7838 9.9570 0.0900 42 1 4.4361 -1.3368 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054262331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:09 Heat of formation + Delta-G solvation = 19.855309 kcal Electronic energy + Delta-G solvation = -25922.935531 eV Core-core repulsion = 22062.421797 eV Total energy + Delta-G solvation = -3860.513735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.45511 -41.24821 -40.47750 -37.90636 -36.04564 -35.71612 -34.09886 -33.17907 -32.48034 -31.41961 -29.25551 -28.67483 -27.73702 -26.41854 -24.58987 -23.57880 -22.53365 -22.11866 -21.62450 -21.35403 -19.30035 -19.00660 -17.95875 -17.52805 -17.26311 -17.13878 -16.53425 -16.21722 -16.07615 -15.91208 -15.75767 -15.23224 -14.95306 -14.84748 -14.56701 -14.50455 -13.89595 -13.65157 -13.50809 -13.48268 -13.34763 -13.25145 -13.06755 -13.04601 -12.67020 -12.33920 -12.15898 -12.00310 -11.90588 -11.83691 -11.67351 -11.45905 -10.91476 -10.29650 -9.95521 -9.73935 -9.61298 -8.86268 -7.93890 -5.31102 0.05548 0.24124 0.43398 0.93576 1.45495 1.49929 1.56190 1.60087 2.08344 2.18893 2.44575 2.77649 2.95051 3.28339 3.43146 3.52572 3.70163 3.79923 3.81006 3.95487 4.11311 4.31802 4.43201 4.48624 4.53127 4.61265 4.67418 4.67907 4.74375 4.75851 4.82462 4.86841 4.95433 5.15756 5.23469 5.25290 5.28451 5.30698 5.42567 5.50606 5.54297 5.84474 6.02375 6.08897 6.26105 6.55859 6.99555 7.00745 7.64418 8.32516 9.19152 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002234 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.837588 B =12531.259992 C =13296.274429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.201 3.799 3 N -0.492 5.492 4 C -0.103 4.103 5 C 0.602 3.398 6 O -0.567 6.567 7 N -0.701 5.701 8 C 0.174 3.826 9 C -0.111 4.111 10 C -0.088 4.088 11 C -0.111 4.111 12 C -0.110 4.110 13 C -0.118 4.118 14 C -0.076 4.076 15 C 0.171 3.829 16 N -0.624 5.624 17 C -0.247 4.247 18 H 0.091 0.909 19 C -0.064 4.064 20 N -0.953 5.953 21 Si 0.989 3.011 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.274 1.274 25 C 0.222 3.778 26 C 0.027 3.973 27 O -0.196 6.196 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.413 0.587 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.251 0.749 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -27.221 3.384 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.008 4.008 3 N -0.223 5.223 4 C -0.222 4.222 5 C 0.389 3.611 6 O -0.447 6.447 7 N -0.351 5.351 8 C 0.052 3.948 9 C -0.112 4.112 10 C -0.106 4.106 11 C -0.129 4.129 12 C -0.111 4.111 13 C -0.118 4.118 14 C -0.094 4.094 15 C 0.047 3.953 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.258 4.258 20 N -0.601 5.601 21 Si 0.816 3.184 22 H -0.200 1.200 23 H -0.218 1.218 24 H -0.200 1.200 25 C 0.097 3.903 26 C -0.047 4.047 27 O -0.083 6.083 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.250 0.750 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.172 0.828 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.062 -26.697 3.400 26.992 hybrid contribution -0.287 1.057 -0.337 1.146 sum -2.350 -25.640 3.063 25.929 Atomic orbital electron populations 1.20605 0.77915 1.06765 1.06393 1.27227 0.98044 0.77613 0.97932 1.70778 1.00884 1.31253 1.19349 1.21751 0.92024 0.93860 1.14581 1.16900 0.86287 0.82045 0.75889 1.90804 1.25269 1.75868 1.52722 1.45914 1.11186 1.04951 1.73091 1.20162 0.86967 0.83704 1.03960 1.19630 1.03309 0.95413 0.92829 1.21163 0.97696 0.93108 0.98612 1.20690 1.00619 0.95205 0.96409 1.21206 0.98112 0.96736 0.95069 1.20573 1.00852 0.95065 0.95329 1.20503 0.98327 0.91662 0.98938 1.19802 0.97560 0.84576 0.93391 1.44256 1.80090 1.08681 1.02063 1.19375 1.38958 0.88041 0.91119 0.89172 1.25785 1.01786 1.01401 0.96789 1.70158 1.54760 1.28521 1.06625 0.85004 0.78394 0.77943 0.77078 1.19954 1.21795 1.20001 1.19278 0.97462 0.88740 0.84866 1.25777 0.85568 0.95184 0.98196 1.84436 1.16665 1.38003 1.69161 0.87116 0.86812 0.87390 0.75033 0.89263 0.89936 0.82785 0.84991 0.84250 0.94052 0.94052 0.93980 0.95711 0.95732 0.72737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.23 0.75 0.41 16 2 C 0.20 3.02 8.30 88.39 0.73 3.75 16 3 N -0.49 -10.19 11.06 -293.04 -3.24 -13.43 16 4 C -0.10 -2.19 7.00 40.41 0.28 -1.90 16 5 C 0.60 14.45 7.81 86.66 0.68 15.13 16 6 O -0.57 -15.92 16.89 -4.05 -0.07 -15.99 16 7 N -0.70 -15.48 5.54 -470.11 -2.61 -18.09 16 8 C 0.17 3.70 5.80 85.63 0.50 4.19 16 9 C -0.11 -2.78 5.25 -19.88 -0.10 -2.89 16 10 C -0.09 -2.24 9.70 22.25 0.22 -2.02 16 11 C -0.11 -3.62 10.05 22.30 0.22 -3.39 16 12 C -0.11 -4.55 6.22 -19.83 -0.12 -4.68 16 13 C -0.12 -4.50 6.22 -19.83 -0.12 -4.62 16 14 C -0.08 -2.21 9.70 22.30 0.22 -1.99 16 15 C 0.17 7.55 7.25 85.63 0.62 8.17 16 16 N -0.62 -33.97 3.41 -709.70 -2.42 -36.38 16 17 C -0.25 -14.17 10.32 84.03 0.87 -13.31 16 18 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 19 C -0.06 -3.71 5.49 84.86 0.47 -3.24 16 20 N -0.95 -57.90 10.45 21.65 0.23 -57.68 16 21 Si 0.99 45.76 29.55 68.60 2.03 47.79 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 25 C 0.22 11.64 5.39 85.63 0.46 12.10 16 26 C 0.03 0.42 11.95 67.32 0.80 1.22 16 27 O -0.20 -2.89 10.73 0.43 0.00 -2.89 16 28 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.41 9.13 8.19 -92.71 -0.76 8.37 16 32 H 0.09 1.75 8.09 -2.39 -0.02 1.74 16 33 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 34 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 40 H 0.02 1.45 7.49 -2.39 -0.02 1.43 16 41 H 0.02 1.44 7.49 -2.39 -0.02 1.42 16 42 H 0.26 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -75.66 364.32 0.69 -74.96 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.30 Total: 14.76 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.46 Total: 6.94 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -8.04 Total: -125.58 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.06 Total: -18.87 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -75.66 0.69 -74.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054262331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.820 kcal (2) G-P(sol) polarization free energy of solvation -75.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds