Wall clock time and date at job start Tue Mar 31 2020 15:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41265 * 128.07809 * 2 1 4 4 N 1.30126 * 106.59105 * 179.97438 * 3 2 1 5 5 O 1.20893 * 111.98215 * 359.97438 * 4 3 2 6 6 C 1.34634 * 111.46584 * 0.02562 * 5 4 3 7 7 C 1.47518 * 126.94229 * 179.97438 * 6 5 4 8 8 O 1.21585 * 119.99966 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99779 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47095 * 180.02562 * 10 9 7 12 12 C 1.38251 * 120.02134 * 90.00282 * 11 10 9 13 13 C 1.38135 * 119.96018 * 180.02562 * 12 11 10 14 14 C 1.38446 * 120.10525 * 359.97438 * 13 12 11 15 15 C 1.38062 * 119.93813 * 0.02562 * 14 13 12 16 16 C 1.38151 * 120.01590 * 269.72742 * 11 10 9 17 17 C 1.50772 * 108.86276 * 180.02562 * 15 14 13 18 18 N 1.46629 * 107.70518 * 359.97438 * 17 15 14 19 19 C 1.36932 * 126.56469 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00478 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00132 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99908 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00417 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46688 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47456 * 119.99483 * 23 21 19 26 26 H 1.48500 * 109.47064 * 239.99869 * 23 21 19 27 27 C 1.46633 * 106.87355 * 0.02562 * 18 17 15 28 28 H 1.09004 * 109.46859 * 89.97354 * 1 2 3 29 29 H 1.08997 * 109.47091 * 209.97947 * 1 2 3 30 30 H 1.09001 * 109.47178 * 329.97930 * 1 2 3 31 31 H 1.08001 * 126.70425 * 359.95913 * 3 2 1 32 32 H 0.96993 * 120.00215 * 0.02562 * 9 7 6 33 33 H 1.09006 * 109.47100 * 300.00510 * 10 9 7 34 34 H 1.09005 * 109.46618 * 59.99822 * 10 9 7 35 35 H 1.08000 * 120.01793 * 359.97438 * 12 11 10 36 36 H 1.08008 * 119.94318 * 179.97438 * 13 12 11 37 37 H 1.08007 * 119.94824 * 359.97438 * 16 11 10 38 38 H 1.09001 * 109.81032 * 119.55415 * 17 15 14 39 39 H 1.09003 * 109.81145 * 240.45153 * 17 15 14 40 40 H 0.97002 * 119.99999 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.81317 * 240.44847 * 27 18 17 42 42 H 1.08999 * 109.81349 * 119.54118 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6354 0.0006 5 8 3.5995 -0.5735 0.0014 6 6 2.3508 -1.0770 0.0009 7 6 1.9695 -2.5021 0.0012 8 8 0.7952 -2.8171 0.0002 9 7 2.9229 -3.4547 0.0024 10 6 2.5442 -4.8700 0.0032 11 6 3.7868 -5.7225 0.0051 12 6 4.3560 -6.1129 1.2031 13 6 5.4954 -6.8939 1.2034 14 6 6.0682 -7.2869 0.0058 15 6 5.4999 -6.8971 -1.1905 16 6 4.3547 -6.1191 -1.1902 17 6 6.3183 -7.4594 -2.3250 18 7 7.4274 -8.2200 -1.7406 19 6 8.4053 -8.8920 -2.4242 20 1 8.4058 -8.8931 -3.5041 21 6 9.3960 -9.5718 -1.7290 22 7 9.3951 -9.5709 -0.4128 23 14 10.7304 -10.4879 -2.6614 24 1 10.5073 -10.3359 -4.1217 25 1 12.0583 -9.9286 -2.3023 26 1 10.6861 -11.9280 -2.3016 27 6 7.2882 -8.1242 -0.2840 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 2.0947 2.1541 -0.0006 32 1 3.8597 -3.2034 0.0035 33 1 1.9533 -5.0875 0.8930 34 1 1.9544 -5.0887 -0.8871 35 1 3.9105 -5.8067 2.1380 36 1 5.9400 -7.1983 2.1394 37 1 3.9071 -5.8181 -2.1259 38 1 5.7001 -8.1173 -2.9359 39 1 6.7101 -6.6464 -2.9364 40 1 10.0877 -10.0456 0.0730 41 1 8.1720 -7.6486 0.1411 42 1 7.1627 -9.1199 0.1414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054287824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:20 Heat of formation + Delta-G solvation = 84.261804 kcal Electronic energy + Delta-G solvation = -26100.078299 eV Core-core repulsion = 22242.357439 eV Total energy + Delta-G solvation = -3857.720859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.36995 -40.15394 -39.46393 -36.52517 -35.28035 -34.55698 -32.81265 -32.23702 -31.22443 -29.85522 -28.81199 -27.48802 -26.09249 -24.93652 -23.84634 -22.52946 -22.04754 -20.94328 -20.46460 -20.21341 -18.88862 -18.12377 -17.05416 -16.46632 -16.17002 -15.66058 -15.44694 -15.10897 -14.63149 -14.46728 -14.35004 -14.20253 -13.91902 -13.64665 -13.58161 -13.28300 -13.06414 -13.02823 -12.58118 -12.01203 -11.89338 -11.72979 -11.64406 -11.59314 -11.10834 -10.88745 -10.76208 -10.63899 -10.51381 -10.25009 -10.13988 -9.88507 -9.83378 -9.38812 -8.99895 -8.46737 -8.07414 -6.88940 -5.84819 -3.18111 0.44101 1.48157 1.69572 1.70231 2.33396 2.66008 3.01789 3.35275 3.40589 3.43328 3.78249 4.06385 4.22993 4.37518 4.39556 4.63405 4.63749 4.89302 4.94699 5.18920 5.23358 5.26000 5.31185 5.40365 5.42126 5.45805 5.53086 5.54771 5.79354 5.80902 5.97744 5.99776 6.05718 6.44949 6.50265 6.52257 6.70972 6.72505 7.01115 7.03545 7.29250 7.30325 7.49264 7.61605 7.65985 7.74407 8.09867 9.08152 9.67995 10.34693 11.29393 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.002167 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.167805 B =12915.717047 C =13350.669414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.121 4.121 3 C -0.017 4.017 4 N -0.340 5.340 5 O 0.119 5.881 6 C -0.093 4.093 7 C 0.605 3.395 8 O -0.514 6.514 9 N -0.707 5.707 10 C 0.170 3.830 11 C -0.136 4.136 12 C -0.101 4.101 13 C -0.112 4.112 14 C -0.078 4.078 15 C -0.107 4.107 16 C -0.082 4.082 17 C 0.175 3.825 18 N -0.601 5.601 19 C -0.226 4.226 20 H 0.084 0.916 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.289 1.289 27 C 0.205 3.795 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.199 0.801 32 H 0.411 0.589 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.005 17.346 3.371 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C -0.194 4.194 4 N -0.039 5.039 5 O 0.045 5.955 6 C -0.159 4.159 7 C 0.388 3.612 8 O -0.390 6.390 9 N -0.358 5.358 10 C 0.048 3.952 11 C -0.137 4.137 12 C -0.120 4.120 13 C -0.131 4.131 14 C -0.079 4.079 15 C -0.107 4.107 16 C -0.101 4.101 17 C 0.049 3.951 18 N -0.327 5.327 19 C -0.353 4.353 20 H 0.102 0.898 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.748 3.252 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.080 3.920 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.215 0.785 32 H 0.246 0.754 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.435 17.516 3.390 24.257 hybrid contribution 0.512 -0.345 -0.372 0.721 sum -15.923 17.171 3.018 23.611 Atomic orbital electron populations 1.20337 0.86275 1.04188 1.03515 1.21662 0.99077 0.90271 1.01529 1.25030 0.87724 1.02162 1.04517 1.73795 1.23092 0.91206 1.15814 1.84989 1.28099 1.15517 1.66910 1.24053 0.84751 0.96279 1.10773 1.16492 0.85714 0.81455 0.77506 1.90849 1.17149 1.80589 1.50442 1.46114 1.10046 1.06373 1.73236 1.20224 0.94382 0.77286 1.03268 1.19396 0.98061 1.02622 0.93616 1.20825 0.95912 0.98323 0.96911 1.20505 0.96077 0.99155 0.97340 1.21573 0.97646 0.95733 0.92970 1.20725 0.95308 0.97642 0.97045 1.20310 0.94866 0.97733 0.97147 1.19711 0.88931 0.94117 0.92300 1.43964 1.27989 1.59596 1.01196 1.19026 1.01573 1.24179 0.90529 0.89775 1.24846 0.99165 1.00570 0.95830 1.69929 1.35418 1.46687 1.04960 0.85947 0.81327 0.79200 0.78702 1.20348 1.21596 1.21607 1.19757 0.90192 0.96377 0.85660 0.90097 0.89105 0.90737 0.78452 0.75381 0.90193 0.90188 0.86227 0.86042 0.86437 0.94545 0.94547 0.93491 0.91715 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 9.96 36.01 0.36 -0.22 16 2 C -0.12 -1.05 6.37 -103.99 -0.66 -1.71 16 3 C -0.02 -0.14 12.14 -17.12 -0.21 -0.34 16 4 N -0.34 -3.63 12.04 30.46 0.37 -3.27 16 5 O 0.12 1.26 11.04 15.57 0.17 1.43 16 6 C -0.09 -0.94 7.29 -36.31 -0.26 -1.20 16 7 C 0.60 6.54 7.82 -12.48 -0.10 6.44 16 8 O -0.51 -6.58 15.11 5.29 0.08 -6.50 16 9 N -0.71 -6.98 5.55 -62.53 -0.35 -7.33 16 10 C 0.17 1.76 5.80 -5.19 -0.03 1.73 16 11 C -0.14 -1.71 5.25 -104.65 -0.55 -2.26 16 12 C -0.10 -1.32 9.70 -39.61 -0.38 -1.70 16 13 C -0.11 -1.78 10.05 -39.54 -0.40 -2.17 16 14 C -0.08 -1.51 6.22 -104.57 -0.65 -2.16 16 15 C -0.11 -1.95 6.22 -104.58 -0.65 -2.60 16 16 C -0.08 -1.18 9.70 -39.54 -0.38 -1.56 16 17 C 0.18 3.66 7.25 -5.09 -0.04 3.63 16 18 N -0.60 -15.34 3.41 -175.68 -0.60 -15.94 16 19 C -0.23 -6.18 10.32 -15.06 -0.16 -6.33 16 20 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -26.43 10.44 55.49 0.58 -25.85 16 23 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.20 4.93 5.39 -5.08 -0.03 4.90 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.74 6.73 -51.93 -0.35 0.39 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.20 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.41 3.75 8.29 -40.82 -0.34 3.41 16 33 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.07 1.71 7.49 -51.93 -0.39 1.32 16 42 H 0.07 1.71 7.49 -51.93 -0.39 1.32 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -31.33 360.54 -8.81 -40.14 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.23 Total: 1.16 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -4.23 Total: -5.89 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.00 Total: -52.38 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: 0.25 Total: -5.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.33 -8.81 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054287824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.399 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds