Wall clock time and date at job start Tue Mar 31 2020 15:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41265 * 128.07809 * 2 1 4 4 N 1.30126 * 106.59105 * 179.97438 * 3 2 1 5 5 O 1.20893 * 111.98215 * 359.97438 * 4 3 2 6 6 C 1.34634 * 111.46584 * 0.02562 * 5 4 3 7 7 C 1.47518 * 126.94229 * 179.97438 * 6 5 4 8 8 O 1.21585 * 119.99966 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99779 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47095 * 180.02562 * 10 9 7 12 12 C 1.38251 * 120.02134 * 90.00282 * 11 10 9 13 13 C 1.38135 * 119.96018 * 180.02562 * 12 11 10 14 14 C 1.38446 * 120.10525 * 359.97438 * 13 12 11 15 15 C 1.38062 * 119.93813 * 0.02562 * 14 13 12 16 16 C 1.38151 * 120.01590 * 269.72742 * 11 10 9 17 17 C 1.50772 * 108.86276 * 180.02562 * 15 14 13 18 18 N 1.46629 * 107.70518 * 359.97438 * 17 15 14 19 19 C 1.36932 * 126.56469 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00478 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00132 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99908 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00417 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46688 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47456 * 119.99483 * 23 21 19 26 26 H 1.48500 * 109.47064 * 239.99869 * 23 21 19 27 27 C 1.46633 * 106.87355 * 0.02562 * 18 17 15 28 28 H 1.09004 * 109.46859 * 89.97354 * 1 2 3 29 29 H 1.08997 * 109.47091 * 209.97947 * 1 2 3 30 30 H 1.09001 * 109.47178 * 329.97930 * 1 2 3 31 31 H 1.08001 * 126.70425 * 359.95913 * 3 2 1 32 32 H 0.96993 * 120.00215 * 0.02562 * 9 7 6 33 33 H 1.09006 * 109.47100 * 300.00510 * 10 9 7 34 34 H 1.09005 * 109.46618 * 59.99822 * 10 9 7 35 35 H 1.08000 * 120.01793 * 359.97438 * 12 11 10 36 36 H 1.08008 * 119.94318 * 179.97438 * 13 12 11 37 37 H 1.08007 * 119.94824 * 359.97438 * 16 11 10 38 38 H 1.09001 * 109.81032 * 119.55415 * 17 15 14 39 39 H 1.09003 * 109.81145 * 240.45153 * 17 15 14 40 40 H 0.97002 * 119.99999 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.81317 * 240.44847 * 27 18 17 42 42 H 1.08999 * 109.81349 * 119.54118 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6354 0.0006 5 8 3.5995 -0.5735 0.0014 6 6 2.3508 -1.0770 0.0009 7 6 1.9695 -2.5021 0.0012 8 8 0.7952 -2.8171 0.0002 9 7 2.9229 -3.4547 0.0024 10 6 2.5442 -4.8700 0.0032 11 6 3.7868 -5.7225 0.0051 12 6 4.3560 -6.1129 1.2031 13 6 5.4954 -6.8939 1.2034 14 6 6.0682 -7.2869 0.0058 15 6 5.4999 -6.8971 -1.1905 16 6 4.3547 -6.1191 -1.1902 17 6 6.3183 -7.4594 -2.3250 18 7 7.4274 -8.2200 -1.7406 19 6 8.4053 -8.8920 -2.4242 20 1 8.4058 -8.8931 -3.5041 21 6 9.3960 -9.5718 -1.7290 22 7 9.3951 -9.5709 -0.4128 23 14 10.7304 -10.4879 -2.6614 24 1 10.5073 -10.3359 -4.1217 25 1 12.0583 -9.9286 -2.3023 26 1 10.6861 -11.9280 -2.3016 27 6 7.2882 -8.1242 -0.2840 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 2.0947 2.1541 -0.0006 32 1 3.8597 -3.2034 0.0035 33 1 1.9533 -5.0875 0.8930 34 1 1.9544 -5.0887 -0.8871 35 1 3.9105 -5.8067 2.1380 36 1 5.9400 -7.1983 2.1394 37 1 3.9071 -5.8181 -2.1259 38 1 5.7001 -8.1173 -2.9359 39 1 6.7101 -6.6464 -2.9364 40 1 10.0877 -10.0456 0.0730 41 1 8.1720 -7.6486 0.1411 42 1 7.1627 -9.1199 0.1414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054287824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:19 Heat of formation + Delta-G solvation = 64.889680 kcal Electronic energy + Delta-G solvation = -26100.918337 eV Core-core repulsion = 22242.357439 eV Total energy + Delta-G solvation = -3858.560898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.05472 -41.25885 -40.58562 -37.92665 -36.15788 -35.49809 -34.15670 -33.44292 -32.44954 -31.42089 -29.62602 -28.76829 -27.70017 -26.28318 -24.70715 -23.63852 -23.16305 -22.10282 -21.69969 -21.40382 -19.70838 -19.00766 -18.83606 -17.34356 -17.19028 -16.93920 -16.53197 -16.20238 -16.06992 -15.90599 -15.79126 -15.26761 -14.94322 -14.66947 -14.49727 -14.20182 -14.14625 -13.60041 -13.59309 -13.48159 -13.47168 -13.29513 -13.05755 -13.03566 -12.73185 -12.27786 -12.05786 -11.98794 -11.83734 -11.64835 -11.48617 -11.42370 -10.93665 -10.60519 -10.17057 -9.71178 -9.59741 -8.85447 -7.94330 -5.31169 -0.29016 0.25521 0.46463 1.06970 1.45555 1.47152 1.57357 1.57847 1.87302 2.19978 2.44038 2.85007 3.19935 3.28233 3.45249 3.53954 3.59047 3.71635 3.82293 3.97384 3.99394 4.14871 4.32741 4.35984 4.51186 4.65527 4.72685 4.77818 4.79094 4.81796 4.84153 4.95378 4.97905 5.14311 5.18784 5.29187 5.31954 5.32843 5.45499 5.51900 5.56555 5.87071 6.05347 6.09348 6.23803 6.84610 6.99863 7.02823 7.64739 8.32502 9.19040 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.002167 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.167805 B =12915.717047 C =13350.669414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.119 4.119 3 C -0.005 4.005 4 N -0.367 5.367 5 O 0.104 5.896 6 C -0.110 4.110 7 C 0.610 3.390 8 O -0.535 6.535 9 N -0.702 5.702 10 C 0.175 3.825 11 C -0.112 4.112 12 C -0.086 4.086 13 C -0.113 4.113 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.074 4.074 17 C 0.171 3.829 18 N -0.625 5.625 19 C -0.243 4.243 20 H 0.091 0.909 21 C -0.066 4.066 22 N -0.953 5.953 23 Si 0.988 3.012 24 H -0.262 1.262 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.220 3.780 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.233 0.767 32 H 0.415 0.585 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.251 0.749 41 H 0.024 0.976 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.543 19.574 3.209 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C -0.182 4.182 4 N -0.069 5.069 5 O 0.033 5.967 6 C -0.175 4.175 7 C 0.394 3.606 8 O -0.413 6.413 9 N -0.352 5.352 10 C 0.053 3.947 11 C -0.112 4.112 12 C -0.104 4.104 13 C -0.131 4.131 14 C -0.112 4.112 15 C -0.119 4.119 16 C -0.093 4.093 17 C 0.046 3.954 18 N -0.352 5.352 19 C -0.371 4.371 20 H 0.109 0.891 21 C -0.259 4.259 22 N -0.601 5.601 23 Si 0.815 3.185 24 H -0.187 1.187 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.095 3.905 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.249 0.751 32 H 0.251 0.749 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.175 0.825 36 H 0.148 0.852 37 H 0.161 0.839 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -18.985 19.740 3.210 27.576 hybrid contribution 1.157 -0.906 -0.301 1.499 sum -17.828 18.835 2.908 26.097 Atomic orbital electron populations 1.20407 0.84839 1.04764 1.04121 1.22043 1.00043 0.90015 1.00226 1.25609 0.86659 1.03576 1.02361 1.73786 1.24542 0.91345 1.17225 1.84966 1.28331 1.15659 1.67738 1.24061 0.85134 0.96328 1.11983 1.16484 0.85377 0.81746 0.77002 1.90842 1.17907 1.80988 1.51570 1.46004 1.10227 1.06084 1.72929 1.20214 0.92983 0.76933 1.04523 1.19627 0.97856 1.01072 0.92661 1.21189 0.94202 0.96253 0.98760 1.20695 0.96855 0.99227 0.96328 1.21202 0.97071 0.97721 0.95210 1.20575 0.96790 0.99403 0.95129 1.20542 0.93244 0.96311 0.99172 1.19813 0.88228 0.93891 0.93482 1.44276 1.28880 1.59921 1.02108 1.19441 1.02256 1.24248 0.91162 0.89147 1.25777 1.01582 1.01788 0.96762 1.70163 1.35975 1.47501 1.06456 0.84876 0.78035 0.77387 0.78198 1.18662 1.21682 1.21683 1.19285 0.91304 0.94999 0.84883 0.89350 0.90562 0.88106 0.75066 0.74863 0.88729 0.89370 0.82507 0.85205 0.83934 0.94045 0.94044 0.94027 0.95831 0.95839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.96 71.24 0.71 -0.19 16 2 C -0.12 -1.78 6.37 -19.45 -0.12 -1.90 16 3 C 0.00 -0.06 12.14 85.69 1.04 0.98 16 4 N -0.37 -7.22 12.04 -58.54 -0.70 -7.93 16 5 O 0.10 2.06 11.04 65.89 0.73 2.79 16 6 C -0.11 -2.01 7.29 24.39 0.18 -1.83 16 7 C 0.61 11.77 7.82 86.69 0.68 12.44 16 8 O -0.54 -12.44 15.11 -3.98 -0.06 -12.50 16 9 N -0.70 -11.77 5.55 -470.01 -2.61 -14.38 16 10 C 0.18 2.93 5.80 85.63 0.50 3.43 16 11 C -0.11 -2.41 5.25 -19.88 -0.10 -2.52 16 12 C -0.09 -1.96 9.70 22.25 0.22 -1.74 16 13 C -0.11 -3.48 10.05 22.29 0.22 -3.26 16 14 C -0.11 -4.44 6.22 -19.83 -0.12 -4.56 16 15 C -0.12 -4.32 6.22 -19.83 -0.12 -4.44 16 16 C -0.07 -1.96 9.70 22.30 0.22 -1.74 16 17 C 0.17 7.31 7.25 85.63 0.62 7.94 16 18 N -0.63 -33.58 3.41 -709.73 -2.42 -35.99 16 19 C -0.24 -13.83 10.32 84.03 0.87 -12.97 16 20 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 21 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 22 N -0.95 -57.70 10.44 21.65 0.23 -57.47 16 23 Si 0.99 45.70 29.55 68.60 2.03 47.73 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 27 C 0.22 11.41 5.39 85.64 0.46 11.87 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.08 6.73 -2.39 -0.02 1.06 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.23 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.41 6.47 8.29 -92.71 -0.77 5.70 16 33 H 0.09 1.42 8.09 -2.38 -0.02 1.40 16 34 H 0.09 1.43 8.08 -2.38 -0.02 1.41 16 35 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 37 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.02 1.37 7.49 -2.39 -0.02 1.35 16 42 H 0.02 1.36 7.49 -2.39 -0.02 1.35 16 Total: -1.00 -72.61 360.54 3.19 -69.42 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.30 Total: 10.14 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.70 Total: -1.80 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -5.50 Total: -115.77 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.67 Total: -9.71 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -72.61 3.19 -69.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054287824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.311 kcal (2) G-P(sol) polarization free energy of solvation -72.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds