Wall clock time and date at job start Tue Mar 31 2020 15:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35317 * 128.04036 * 2 1 4 4 O 1.34008 * 106.66552 * 180.23795 * 3 2 1 5 5 N 1.20908 * 111.84950 * 359.74270 * 4 3 2 6 6 C 1.30985 * 111.43857 * 0.02562 * 5 4 3 7 7 C 1.48325 * 126.93680 * 179.97438 * 6 5 4 8 8 O 1.21498 * 119.99794 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00155 * 0.02977 * 7 6 5 10 10 C 1.46498 * 119.99856 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.47025 * 180.02562 * 10 9 7 12 12 C 1.38259 * 120.01597 * 270.20932 * 11 10 9 13 13 C 1.38143 * 119.95882 * 180.23398 * 12 11 10 14 14 C 1.38447 * 120.10410 * 359.53063 * 13 12 11 15 15 C 1.38069 * 119.93310 * 0.25858 * 14 13 12 16 16 C 1.38136 * 120.02018 * 89.99790 * 11 10 9 17 17 C 1.50779 * 108.86093 * 179.97438 * 15 14 13 18 18 N 1.46639 * 107.69865 * 0.02562 * 17 15 14 19 19 C 1.36939 * 126.56165 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99850 * 354.40802 * 19 18 17 21 21 C 1.38806 * 120.00365 * 174.40699 * 19 18 17 22 22 N 1.31624 * 119.99614 * 6.82208 * 21 19 18 23 23 Si 1.86803 * 120.00564 * 186.81824 * 21 19 18 24 24 H 1.48500 * 109.46838 * 94.98372 * 23 21 19 25 25 H 1.48496 * 109.47362 * 214.98638 * 23 21 19 26 26 H 1.48504 * 109.46891 * 334.99079 * 23 21 19 27 27 C 1.46629 * 106.87528 * 359.97438 * 18 17 15 28 28 H 1.09002 * 109.47198 * 270.16562 * 1 2 3 29 29 H 1.09009 * 109.46614 * 30.16448 * 1 2 3 30 30 H 1.09000 * 109.46992 * 150.16307 * 1 2 3 31 31 H 1.07999 * 126.66390 * 359.94805 * 3 2 1 32 32 H 0.96997 * 120.00109 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47737 * 59.99570 * 10 9 7 34 34 H 1.09002 * 109.47514 * 299.99497 * 10 9 7 35 35 H 1.07996 * 120.01955 * 0.04401 * 12 11 10 36 36 H 1.07997 * 119.94915 * 179.81028 * 13 12 11 37 37 H 1.07997 * 119.95299 * 0.02562 * 16 11 10 38 38 H 1.08997 * 109.81330 * 119.54088 * 17 15 14 39 39 H 1.08994 * 109.81611 * 240.45389 * 17 15 14 40 40 H 0.96999 * 119.99655 * 179.97438 * 22 21 19 41 41 H 1.09008 * 109.81276 * 240.45501 * 27 18 17 42 42 H 1.09005 * 109.81476 * 119.55233 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5773 -0.0053 5 7 3.5989 -0.6317 -0.0034 6 6 2.3837 -1.1206 0.0028 7 6 1.9992 -2.5531 0.0063 8 8 0.8255 -2.8671 0.0116 9 7 2.9518 -3.5065 0.0036 10 6 2.5720 -4.9214 0.0065 11 6 3.8141 -5.7750 0.0033 12 6 4.3825 -6.1644 -1.1953 13 6 5.5182 -6.9508 -1.1969 14 6 6.0939 -7.3416 0.0000 15 6 5.5287 -6.9490 1.1970 16 6 4.3877 -6.1650 1.1979 17 6 6.3498 -7.5094 2.3307 18 7 7.4571 -8.2716 1.7449 19 6 8.4365 -8.9426 2.4274 20 1 8.4928 -8.8680 3.5035 21 6 9.3567 -9.7188 1.7365 22 7 9.3733 -9.7044 0.4204 23 14 10.5718 -10.7836 2.6742 24 1 10.0320 -12.1618 2.7946 25 1 11.8643 -10.8202 1.9440 26 1 10.7847 -10.2153 4.0296 27 6 7.3142 -8.1788 0.2886 28 1 -0.3634 0.0030 1.0277 29 1 -0.3633 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5113 31 1 2.0560 2.1075 -0.0008 32 1 3.8888 -3.2559 -0.0009 33 1 1.9781 -5.1401 -0.8809 34 1 1.9850 -5.1383 0.8990 35 1 3.9371 -5.8566 -2.1298 36 1 5.9604 -7.2575 -2.1333 37 1 3.9452 -5.8581 2.1341 38 1 6.7435 -6.6953 2.9392 39 1 5.7329 -8.1657 2.9444 40 1 10.0166 -10.2465 -0.0624 41 1 7.1873 -9.1754 -0.1345 42 1 8.1972 -7.7044 -0.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054288622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:21 Heat of formation + Delta-G solvation = 83.498395 kcal Electronic energy + Delta-G solvation = -26043.902190 eV Core-core repulsion = 22186.148227 eV Total energy + Delta-G solvation = -3857.753963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.45155 -40.09387 -39.41811 -36.46987 -35.06852 -34.67904 -32.83830 -32.19986 -31.16989 -29.79344 -28.59543 -27.63592 -26.16307 -25.20925 -23.84067 -22.07757 -22.01913 -20.88532 -20.45535 -20.18110 -18.66204 -18.13587 -17.04475 -16.85567 -16.24419 -15.64024 -15.41267 -15.03027 -14.61807 -14.45648 -14.34612 -14.19560 -13.89636 -13.62138 -13.61050 -13.27001 -13.05237 -12.75179 -12.55398 -12.00187 -11.86506 -11.76135 -11.69113 -11.59124 -11.10935 -10.87164 -10.66108 -10.54978 -10.49453 -10.24395 -10.15497 -9.83706 -9.83587 -9.35313 -8.95919 -8.45434 -8.06058 -6.87962 -5.85333 -3.17739 0.79427 1.29040 1.51039 1.71397 2.67487 2.87353 2.88340 3.36004 3.40945 3.43204 3.62237 4.07275 4.26251 4.38566 4.47634 4.64375 4.69356 4.91672 5.03537 5.20502 5.24786 5.26800 5.27660 5.38833 5.43258 5.45521 5.54609 5.57195 5.82192 5.85581 5.98949 6.06776 6.09260 6.46232 6.51191 6.53142 6.72537 6.74292 7.01891 7.13641 7.28981 7.31852 7.50382 7.63313 7.66348 7.82561 8.10429 9.08262 9.68346 10.35727 11.29146 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025067 B = 0.002140 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.751034 B =13081.846574 C =13479.980123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.151 4.151 3 C -0.068 4.068 4 O 0.126 5.874 5 N -0.327 5.327 6 C -0.030 4.030 7 C 0.598 3.402 8 O -0.524 6.524 9 N -0.707 5.707 10 C 0.170 3.830 11 C -0.135 4.135 12 C -0.102 4.102 13 C -0.112 4.112 14 C -0.079 4.079 15 C -0.107 4.107 16 C -0.082 4.082 17 C 0.175 3.825 18 N -0.601 5.601 19 C -0.227 4.227 20 H 0.084 0.916 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.917 3.083 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.204 3.796 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.224 0.776 32 H 0.410 0.590 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.255 0.745 41 H 0.067 0.933 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.612 20.174 -3.417 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 C -0.149 4.149 4 O 0.050 5.950 5 N -0.027 5.027 6 C -0.189 4.189 7 C 0.381 3.619 8 O -0.399 6.399 9 N -0.358 5.358 10 C 0.048 3.952 11 C -0.136 4.136 12 C -0.120 4.120 13 C -0.130 4.130 14 C -0.080 4.080 15 C -0.107 4.107 16 C -0.101 4.101 17 C 0.050 3.950 18 N -0.327 5.327 19 C -0.355 4.355 20 H 0.102 0.898 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.747 3.253 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.080 3.920 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.240 0.760 32 H 0.245 0.755 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.059 19.131 -3.444 25.214 hybrid contribution 0.383 -0.202 0.384 0.579 sum -15.677 18.929 -3.060 24.767 Atomic orbital electron populations 1.20230 0.86493 1.03908 1.03277 1.21387 0.99171 0.90060 1.05011 1.25815 0.82368 1.01371 1.05297 1.84793 1.29493 1.15177 1.65547 1.74221 1.21570 0.91686 1.15230 1.23486 0.89607 0.97164 1.08685 1.16864 0.85596 0.82319 0.77099 1.90780 1.17379 1.81671 1.50036 1.46079 1.10113 1.06191 1.73446 1.20202 0.94330 0.77505 1.03122 1.19414 0.97998 1.02528 0.93633 1.20823 0.95985 0.98337 0.96885 1.20501 0.96092 0.99100 0.97352 1.21562 0.97682 0.95780 0.92957 1.20727 0.95351 0.97555 0.97070 1.20299 0.94928 0.97744 0.97133 1.19710 0.88914 0.94119 0.92283 1.43960 1.27702 1.59908 1.01154 1.18984 1.04678 1.20874 0.90938 0.89816 1.24864 0.99605 0.99998 0.95817 1.69938 1.38502 1.43187 1.05149 0.86018 0.80066 0.80543 0.78671 1.21435 1.21629 1.20465 1.19761 0.90111 0.96424 0.85712 0.90490 0.90982 0.89417 0.75982 0.75470 0.90335 0.90341 0.86286 0.86029 0.86500 0.94627 0.94459 0.93440 0.91499 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.01 36.01 0.36 -0.20 16 2 C -0.15 -1.29 6.34 -104.11 -0.66 -1.95 16 3 C -0.07 -0.40 12.24 29.69 0.36 -0.04 16 4 O 0.13 1.11 11.18 17.26 0.19 1.30 16 5 N -0.33 -3.65 11.84 33.29 0.39 -3.26 16 6 C -0.03 -0.34 7.19 -82.53 -0.59 -0.93 16 7 C 0.60 7.55 7.85 -12.11 -0.10 7.45 16 8 O -0.52 -7.56 15.34 5.37 0.08 -7.47 16 9 N -0.71 -8.38 5.55 -62.27 -0.35 -8.72 16 10 C 0.17 2.02 5.80 -5.19 -0.03 1.99 16 11 C -0.14 -1.86 5.25 -104.65 -0.55 -2.40 16 12 C -0.10 -1.43 9.70 -39.61 -0.38 -1.81 16 13 C -0.11 -1.86 10.05 -39.54 -0.40 -2.26 16 14 C -0.08 -1.58 6.22 -104.57 -0.65 -2.23 16 15 C -0.11 -2.03 6.22 -104.57 -0.65 -2.68 16 16 C -0.08 -1.27 9.70 -39.54 -0.38 -1.66 16 17 C 0.18 3.77 7.25 -5.08 -0.04 3.73 16 18 N -0.60 -15.59 3.41 -175.67 -0.60 -16.19 16 19 C -0.23 -6.30 10.31 -15.06 -0.16 -6.46 16 20 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 21 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 22 N -0.92 -26.62 10.49 55.49 0.58 -26.04 16 23 Si 0.92 21.78 29.56 -169.99 -5.02 16.76 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 C 0.20 5.02 5.40 -5.09 -0.03 4.99 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.09 0.77 6.89 -51.93 -0.36 0.41 16 31 H 0.22 0.24 8.06 -52.49 -0.42 -0.19 16 32 H 0.41 4.78 8.22 -40.82 -0.34 4.44 16 33 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.07 1.80 7.38 -51.92 -0.38 1.41 16 42 H 0.06 1.66 7.62 -51.93 -0.40 1.26 16 LS Contribution 360.93 15.07 5.44 5.44 Total: -1.00 -32.35 360.93 -8.50 -40.85 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.24 Total: 2.06 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -3.99 Total: -4.72 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.03 Total: -54.21 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: 0.28 Total: -6.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.35 -8.50 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054288622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.350 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds