Wall clock time and date at job start Tue Mar 31 2020 15:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35317 * 128.04036 * 2 1 4 4 O 1.34008 * 106.66552 * 180.23795 * 3 2 1 5 5 N 1.20908 * 111.84950 * 359.74270 * 4 3 2 6 6 C 1.30985 * 111.43857 * 0.02562 * 5 4 3 7 7 C 1.48325 * 126.93680 * 179.97438 * 6 5 4 8 8 O 1.21498 * 119.99794 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00155 * 0.02977 * 7 6 5 10 10 C 1.46498 * 119.99856 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.47025 * 180.02562 * 10 9 7 12 12 C 1.38259 * 120.01597 * 270.20932 * 11 10 9 13 13 C 1.38143 * 119.95882 * 180.23398 * 12 11 10 14 14 C 1.38447 * 120.10410 * 359.53063 * 13 12 11 15 15 C 1.38069 * 119.93310 * 0.25858 * 14 13 12 16 16 C 1.38136 * 120.02018 * 89.99790 * 11 10 9 17 17 C 1.50779 * 108.86093 * 179.97438 * 15 14 13 18 18 N 1.46639 * 107.69865 * 0.02562 * 17 15 14 19 19 C 1.36939 * 126.56165 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99850 * 354.40802 * 19 18 17 21 21 C 1.38806 * 120.00365 * 174.40699 * 19 18 17 22 22 N 1.31624 * 119.99614 * 6.82208 * 21 19 18 23 23 Si 1.86803 * 120.00564 * 186.81824 * 21 19 18 24 24 H 1.48500 * 109.46838 * 94.98372 * 23 21 19 25 25 H 1.48496 * 109.47362 * 214.98638 * 23 21 19 26 26 H 1.48504 * 109.46891 * 334.99079 * 23 21 19 27 27 C 1.46629 * 106.87528 * 359.97438 * 18 17 15 28 28 H 1.09002 * 109.47198 * 270.16562 * 1 2 3 29 29 H 1.09009 * 109.46614 * 30.16448 * 1 2 3 30 30 H 1.09000 * 109.46992 * 150.16307 * 1 2 3 31 31 H 1.07999 * 126.66390 * 359.94805 * 3 2 1 32 32 H 0.96997 * 120.00109 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47737 * 59.99570 * 10 9 7 34 34 H 1.09002 * 109.47514 * 299.99497 * 10 9 7 35 35 H 1.07996 * 120.01955 * 0.04401 * 12 11 10 36 36 H 1.07997 * 119.94915 * 179.81028 * 13 12 11 37 37 H 1.07997 * 119.95299 * 0.02562 * 16 11 10 38 38 H 1.08997 * 109.81330 * 119.54088 * 17 15 14 39 39 H 1.08994 * 109.81611 * 240.45389 * 17 15 14 40 40 H 0.96999 * 119.99655 * 179.97438 * 22 21 19 41 41 H 1.09008 * 109.81276 * 240.45501 * 27 18 17 42 42 H 1.09005 * 109.81476 * 119.55233 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5773 -0.0053 5 7 3.5989 -0.6317 -0.0034 6 6 2.3837 -1.1206 0.0028 7 6 1.9992 -2.5531 0.0063 8 8 0.8255 -2.8671 0.0116 9 7 2.9518 -3.5065 0.0036 10 6 2.5720 -4.9214 0.0065 11 6 3.8141 -5.7750 0.0033 12 6 4.3825 -6.1644 -1.1953 13 6 5.5182 -6.9508 -1.1969 14 6 6.0939 -7.3416 0.0000 15 6 5.5287 -6.9490 1.1970 16 6 4.3877 -6.1650 1.1979 17 6 6.3498 -7.5094 2.3307 18 7 7.4571 -8.2716 1.7449 19 6 8.4365 -8.9426 2.4274 20 1 8.4928 -8.8680 3.5035 21 6 9.3567 -9.7188 1.7365 22 7 9.3733 -9.7044 0.4204 23 14 10.5718 -10.7836 2.6742 24 1 10.0320 -12.1618 2.7946 25 1 11.8643 -10.8202 1.9440 26 1 10.7847 -10.2153 4.0296 27 6 7.3142 -8.1788 0.2886 28 1 -0.3634 0.0030 1.0277 29 1 -0.3633 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5113 31 1 2.0560 2.1075 -0.0008 32 1 3.8888 -3.2559 -0.0009 33 1 1.9781 -5.1401 -0.8809 34 1 1.9850 -5.1383 0.8990 35 1 3.9371 -5.8566 -2.1298 36 1 5.9604 -7.2575 -2.1333 37 1 3.9452 -5.8581 2.1341 38 1 6.7435 -6.6953 2.9392 39 1 5.7329 -8.1657 2.9444 40 1 10.0166 -10.2465 -0.0624 41 1 7.1873 -9.1754 -0.1345 42 1 8.1972 -7.7044 -0.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054288622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:20 Heat of formation + Delta-G solvation = 62.813758 kcal Electronic energy + Delta-G solvation = -26044.799143 eV Core-core repulsion = 22186.148227 eV Total energy + Delta-G solvation = -3858.650917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.13596 -41.31021 -40.61120 -37.95938 -35.97548 -35.65597 -34.20797 -33.42433 -32.46742 -31.44087 -29.35266 -28.91624 -27.78787 -26.59867 -24.91923 -23.61653 -22.67101 -22.14900 -21.71315 -21.48059 -19.44664 -19.03064 -18.83815 -17.64949 -17.29327 -17.16560 -16.60535 -16.23276 -16.10269 -15.96753 -15.81416 -15.26888 -14.97550 -14.67517 -14.54883 -14.20927 -14.11294 -13.66956 -13.54190 -13.50796 -13.38220 -13.27561 -13.12555 -13.06270 -12.73726 -12.37008 -12.10519 -12.03708 -11.86616 -11.70137 -11.48237 -11.38759 -10.92638 -10.39174 -10.29620 -9.77425 -9.64748 -8.88208 -7.97063 -5.33290 0.06042 0.19628 0.40032 0.72580 1.44326 1.47189 1.56281 1.85744 1.99719 2.29101 2.42622 2.73407 2.93493 3.25092 3.39138 3.50129 3.57964 3.73860 3.91439 3.92934 4.07592 4.10328 4.27447 4.44196 4.45243 4.59462 4.65354 4.72560 4.80200 4.80628 4.83581 4.92311 4.97166 5.11810 5.12906 5.24001 5.29869 5.36664 5.39220 5.48517 5.50813 5.81388 5.98823 6.06939 6.20900 6.83587 6.97372 7.05949 7.62199 8.30612 9.16637 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025067 B = 0.002140 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.751034 B =13081.846574 C =13479.980123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.173 4.173 3 C -0.037 4.037 4 O 0.128 5.872 5 N -0.353 5.353 6 C -0.057 4.057 7 C 0.597 3.403 8 O -0.547 6.547 9 N -0.704 5.704 10 C 0.175 3.825 11 C -0.113 4.113 12 C -0.088 4.088 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.118 4.118 16 C -0.076 4.076 17 C 0.172 3.828 18 N -0.625 5.625 19 C -0.247 4.247 20 H 0.090 0.910 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.988 3.012 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.264 1.264 27 C 0.220 3.780 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.275 0.725 32 H 0.411 0.589 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.155 0.845 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.251 0.749 41 H 0.028 0.972 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.659 22.849 -3.273 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.178 4.178 3 C -0.117 4.117 4 O 0.051 5.949 5 N -0.052 5.052 6 C -0.215 4.215 7 C 0.382 3.618 8 O -0.423 6.423 9 N -0.355 5.355 10 C 0.053 3.947 11 C -0.113 4.113 12 C -0.106 4.106 13 C -0.129 4.129 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.094 4.094 17 C 0.047 3.953 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.815 3.185 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.189 1.189 27 C 0.095 3.905 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.291 0.709 32 H 0.247 0.753 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.173 0.827 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -18.119 21.811 -3.281 28.544 hybrid contribution 0.908 -0.865 0.318 1.293 sum -17.211 20.946 -2.963 27.272 Atomic orbital electron populations 1.20230 0.85532 1.04195 1.03524 1.21714 1.00053 0.89895 1.06180 1.26708 0.80442 1.02817 1.01738 1.84755 1.30967 1.14386 1.64842 1.74223 1.21822 0.92746 1.16411 1.23536 0.90619 0.97056 1.10293 1.17058 0.85253 0.83048 0.76461 1.90764 1.18185 1.82210 1.51188 1.46013 1.10146 1.06074 1.73310 1.20187 0.93128 0.77173 1.04184 1.19623 0.97776 1.01090 0.92855 1.21171 0.94430 0.96403 0.98578 1.20695 0.96701 0.99031 0.96486 1.21217 0.97123 0.97670 0.95092 1.20584 0.96701 0.99185 0.95333 1.20507 0.93464 0.96461 0.99001 1.19803 0.88252 0.93902 0.93369 1.44269 1.28571 1.60260 1.02031 1.19403 1.05315 1.21163 0.91558 0.89176 1.25802 1.01766 1.01383 0.96772 1.70166 1.39216 1.43821 1.06668 0.84928 0.77273 0.78457 0.77855 1.21141 1.21840 1.18879 1.19297 0.91106 0.95092 0.84977 0.90269 0.87935 0.91836 0.70910 0.75302 0.89037 0.89709 0.82725 0.84954 0.84188 0.94109 0.93928 0.93944 0.95436 0.95971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.01 71.24 0.71 -0.17 16 2 C -0.17 -2.53 6.34 -19.53 -0.12 -2.65 16 3 C -0.04 -0.30 12.24 67.15 0.82 0.52 16 4 O 0.13 1.92 11.18 71.95 0.80 2.73 16 5 N -0.35 -7.33 11.84 -49.52 -0.59 -7.92 16 6 C -0.06 -1.21 7.19 42.96 0.31 -0.90 16 7 C 0.60 14.26 7.85 86.93 0.68 14.95 16 8 O -0.55 -15.15 15.34 -3.71 -0.06 -15.21 16 9 N -0.70 -15.24 5.55 -469.23 -2.60 -17.84 16 10 C 0.18 3.63 5.80 85.64 0.50 4.12 16 11 C -0.11 -2.79 5.25 -19.88 -0.10 -2.89 16 12 C -0.09 -2.22 9.70 22.25 0.22 -2.00 16 13 C -0.11 -3.61 10.05 22.30 0.22 -3.38 16 14 C -0.11 -4.55 6.22 -19.83 -0.12 -4.67 16 15 C -0.12 -4.48 6.22 -19.83 -0.12 -4.61 16 16 C -0.08 -2.20 9.70 22.29 0.22 -1.98 16 17 C 0.17 7.56 7.25 85.63 0.62 8.18 16 18 N -0.62 -34.04 3.41 -709.71 -2.42 -36.46 16 19 C -0.25 -14.17 10.31 84.03 0.87 -13.30 16 20 H 0.09 4.89 7.84 -2.91 -0.02 4.87 16 21 C -0.06 -3.69 5.48 84.86 0.47 -3.22 16 22 N -0.95 -57.91 10.49 21.65 0.23 -57.68 16 23 Si 0.99 45.92 29.56 68.60 2.03 47.95 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 27 C 0.22 11.59 5.40 85.63 0.46 12.05 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 1.05 6.89 -2.39 -0.02 1.03 16 31 H 0.28 -0.99 8.06 -2.91 -0.02 -1.01 16 32 H 0.41 8.82 8.22 -92.71 -0.76 8.05 16 33 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 35 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 36 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.03 1.61 7.38 -2.38 -0.02 1.60 16 42 H 0.02 1.30 7.62 -2.38 -0.02 1.28 16 Total: -1.00 -75.49 360.93 3.32 -72.17 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.30 Total: 12.22 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.62 Total: 0.03 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -5.38 Total: -119.89 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.75 Total: -12.48 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -75.49 3.32 -72.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054288622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.988 kcal (2) G-P(sol) polarization free energy of solvation -75.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds