Wall clock time and date at job start Tue Mar 31 2020 16:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39645 * 120.49292 * 322.12076 * 3 2 1 5 5 N 1.31743 * 120.88529 * 180.02562 * 4 3 2 6 6 C 1.31735 * 122.04183 * 0.02562 * 5 4 3 7 7 C 1.39606 * 120.87768 * 0.02562 * 6 5 4 8 8 C 1.47853 * 120.49377 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99784 * 209.87695 * 8 7 6 10 10 N 1.34775 * 119.99865 * 29.87019 * 8 7 6 11 11 C 1.44967 * 117.33539 * 186.13012 * 10 8 7 12 12 C 1.51964 * 111.93726 * 203.73285 * 11 10 8 13 13 O 1.41318 * 111.60668 * 319.69929 * 12 11 10 14 14 C 1.40847 * 118.31177 * 56.89540 * 13 12 11 15 15 H 1.09000 * 109.54405 * 188.63109 * 14 13 12 16 16 C 1.53909 * 110.30288 * 68.00595 * 14 13 12 17 17 N 1.46774 * 107.62912 * 221.41133 * 16 14 13 18 18 C 1.36937 * 125.36646 * 178.78838 * 17 16 14 19 19 H 1.08001 * 120.00416 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99538 * 0.02562 * 18 17 16 21 21 N 1.31613 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99669 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46997 * 89.99975 * 22 20 18 24 24 H 1.48497 * 109.46812 * 209.99875 * 22 20 18 25 25 H 1.48494 * 109.47251 * 330.00071 * 22 20 18 26 26 C 1.46877 * 109.27378 * 358.80598 * 17 16 14 27 27 C 1.44544 * 117.34069 * 5.87779 * 10 8 7 28 28 H 1.09003 * 109.63584 * 286.46272 * 27 10 8 29 29 C 1.39674 * 120.49290 * 142.14767 * 3 2 1 30 30 H 4.52736 * 13.92928 * 359.97438 * 4 2 1 31 31 H 1.08002 * 119.55582 * 0.05071 * 4 3 2 32 32 H 1.07997 * 119.56505 * 180.02562 * 6 5 4 33 33 H 1.08997 * 108.99356 * 324.37089 * 11 10 8 34 34 H 1.08996 * 108.98472 * 83.10477 * 11 10 8 35 35 H 1.09000 * 109.05289 * 80.24696 * 12 11 10 36 36 H 1.09003 * 109.05113 * 199.21557 * 12 11 10 37 37 H 1.08999 * 109.82307 * 340.93644 * 16 14 13 38 38 H 1.08998 * 109.82687 * 101.79937 * 16 14 13 39 39 H 0.97008 * 119.99587 * 179.97438 * 21 20 18 40 40 H 1.08994 * 110.06447 * 137.03665 * 26 17 16 41 41 H 1.09000 * 110.06279 * 258.56222 * 26 17 16 42 42 H 1.08007 * 120.91501 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3150 -0.9488 0.7388 5 7 4.6324 -0.9550 0.7448 6 6 5.3385 -0.0765 0.0629 7 6 4.7111 0.9084 -0.7021 8 6 5.5120 1.8906 -1.4636 9 8 5.0735 3.0061 -1.6660 10 7 6.7282 1.5490 -1.9333 11 6 7.5202 2.5936 -2.5523 12 6 8.5473 2.0295 -3.5198 13 8 9.1471 0.8538 -3.0149 14 6 8.3122 -0.2264 -2.6688 15 1 8.8978 -0.9909 -2.1581 16 6 7.6681 -0.8291 -3.9300 17 7 6.2664 -1.1283 -3.6137 18 6 5.3519 -1.6546 -4.4865 19 1 4.3391 -1.8405 -4.1606 20 6 5.7265 -1.9493 -5.7903 21 7 6.9608 -1.7232 -6.1873 22 14 4.4792 -2.6679 -6.9807 23 1 3.7832 -1.5664 -7.6931 24 1 5.1767 -3.5321 -7.9665 25 1 3.4861 -3.4764 -6.2289 26 6 5.9991 -0.7739 -2.2137 27 6 7.1388 0.1724 -1.7739 28 1 7.3889 -0.0167 -0.7299 29 6 3.3143 0.9513 -0.7385 30 1 -1.0499 -0.0003 0.0009 31 1 2.7761 -1.6882 1.3127 32 1 6.4172 -0.1187 0.0961 33 1 6.8568 3.2686 -3.0930 34 1 8.0370 3.1550 -1.7740 35 1 8.0567 1.8006 -4.4659 36 1 9.3216 2.7770 -3.6925 37 1 7.7171 -0.1115 -4.7490 38 1 8.1889 -1.7449 -4.2096 39 1 7.2227 -1.9295 -7.0984 40 1 5.0386 -0.2649 -2.1336 41 1 6.0004 -1.6707 -1.5941 42 1 2.7971 1.6996 -1.3208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083187757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:10 Heat of formation + Delta-G solvation = 94.782245 kcal Electronic energy + Delta-G solvation = -28953.360210 eV Core-core repulsion = 25096.095551 eV Total energy + Delta-G solvation = -3857.264659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64914 -39.74594 -38.40306 -36.30844 -34.91811 -34.31762 -32.88441 -32.12629 -30.88444 -30.02235 -28.15567 -27.47358 -25.29390 -24.30045 -24.10043 -23.15399 -21.49460 -20.44407 -19.23081 -18.85109 -17.78206 -17.29471 -16.95719 -16.52376 -16.16362 -15.91038 -15.36607 -15.05733 -14.69871 -14.53640 -14.25222 -14.15445 -13.85597 -13.39294 -13.23272 -12.95749 -12.87031 -12.47900 -12.12864 -12.03592 -11.75276 -11.51844 -11.15232 -11.07916 -10.93019 -10.75451 -10.65771 -10.51845 -10.23448 -10.07628 -9.86764 -9.56226 -9.44224 -9.21184 -8.78202 -8.67826 -8.35396 -6.98311 -5.84122 -3.18721 0.48785 0.93921 2.52401 2.62990 2.88524 3.11412 3.33277 3.38737 3.40221 3.87503 3.99199 4.03619 4.27137 4.30203 4.42090 4.67099 4.73193 4.79021 4.91965 5.08153 5.16739 5.24714 5.34524 5.37776 5.43297 5.52943 5.60113 5.75945 5.77777 5.89446 5.93067 5.95913 5.99655 6.12706 6.25452 6.35105 6.43418 6.65075 7.27271 7.30142 7.34060 7.39572 7.61610 7.76083 7.79031 8.10113 8.14789 9.07212 9.66661 10.27399 11.26486 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.006042 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.540497 B = 4632.906291 C = 6512.890291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.144 4.144 3 C -0.047 4.047 4 C 0.137 3.863 5 N -0.478 5.478 6 C 0.126 3.874 7 C -0.163 4.163 8 C 0.565 3.435 9 O -0.534 6.534 10 N -0.577 5.577 11 C 0.086 3.914 12 C 0.058 3.942 13 O -0.368 6.368 14 C 0.071 3.929 15 H 0.114 0.886 16 C 0.150 3.850 17 N -0.594 5.594 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.003 4.003 21 N -0.918 5.918 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.280 1.280 26 C 0.112 3.888 27 C 0.083 3.917 28 H 0.089 0.911 29 C -0.006 4.006 30 H 0.226 0.774 31 H 0.163 0.837 32 H 0.181 0.819 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.255 0.745 40 H 0.054 0.946 41 H 0.040 0.960 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 5.015 12.541 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C -0.049 4.049 4 C -0.020 4.020 5 N -0.185 5.185 6 C -0.031 4.031 7 C -0.169 4.169 8 C 0.353 3.647 9 O -0.412 6.412 10 N -0.309 5.309 11 C -0.036 4.036 12 C -0.019 4.019 13 O -0.285 6.285 14 C 0.012 3.988 15 H 0.132 0.868 16 C 0.025 3.975 17 N -0.321 5.321 18 C -0.360 4.360 19 H 0.095 0.905 20 C -0.199 4.199 21 N -0.565 5.565 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.214 1.214 25 H -0.206 1.206 26 C -0.014 4.014 27 C -0.022 4.022 28 H 0.106 0.894 29 C -0.032 4.032 30 H 0.243 0.757 31 H 0.180 0.820 32 H 0.197 0.803 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.927 4.872 12.664 13.705 hybrid contribution -1.596 0.162 -1.360 2.103 sum -3.522 5.034 11.303 12.865 Atomic orbital electron populations 1.24864 0.95668 0.98888 0.99005 1.19620 0.91486 1.01741 1.01657 1.16761 0.88051 0.98745 1.01392 1.23059 0.89834 0.95030 0.94066 1.67772 1.07466 1.23453 1.19838 1.24079 1.01848 0.87553 0.89641 1.20672 0.94716 0.99222 1.02250 1.18043 0.80911 0.86791 0.78956 1.90750 1.70065 1.21948 1.58442 1.46490 1.16676 1.09452 1.58265 1.21504 0.94585 0.90015 0.97512 1.22287 0.96101 0.87288 0.96236 1.86879 1.34969 1.23001 1.83686 1.22963 0.90650 0.88307 0.96904 0.86789 1.21755 0.84238 0.99646 0.91846 1.44171 1.07793 1.74358 1.05734 1.18994 0.91327 1.34870 0.90764 0.90459 1.24799 0.96758 1.01160 0.97218 1.69939 1.16061 1.53044 1.17465 0.86108 0.80116 0.78621 0.80880 1.21503 1.21448 1.20569 1.22629 0.95226 0.94901 0.88651 1.22484 0.98735 0.81350 0.99586 0.89370 1.21633 0.92076 0.95621 0.93869 0.75710 0.82004 0.80314 0.89029 0.91632 0.91946 0.87712 0.92280 0.92582 0.93508 0.92827 0.94252 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 19.25 29.55 0.57 -1.13 16 2 C -0.14 -1.83 13.27 -38.84 -0.52 -2.35 16 3 C -0.05 -0.65 5.73 -106.91 -0.61 -1.27 16 4 C 0.14 1.78 10.91 -17.06 -0.19 1.59 16 5 N -0.48 -6.73 10.33 -12.59 -0.13 -6.86 16 6 C 0.13 1.80 7.26 -17.08 -0.12 1.67 16 7 C -0.16 -2.57 3.32 -104.87 -0.35 -2.92 16 8 C 0.57 9.86 6.85 -12.33 -0.08 9.77 16 9 O -0.53 -10.40 16.12 5.32 0.09 -10.32 16 10 N -0.58 -9.58 3.08 -169.62 -0.52 -10.10 16 11 C 0.09 1.30 6.22 -5.39 -0.03 1.27 16 12 C 0.06 0.88 6.72 36.63 0.25 1.12 16 13 O -0.37 -6.23 10.24 -34.44 -0.35 -6.58 16 14 C 0.07 1.25 3.82 -26.33 -0.10 1.15 16 15 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 16 C 0.15 3.45 5.02 -3.42 -0.02 3.43 16 17 N -0.59 -14.44 3.39 -171.21 -0.58 -15.02 16 18 C -0.23 -6.30 10.25 -15.06 -0.15 -6.46 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C 0.00 -0.07 5.48 -17.43 -0.10 -0.17 16 21 N -0.92 -26.12 10.26 55.49 0.57 -25.55 16 22 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.11 2.19 4.72 -3.03 -0.01 2.18 16 27 C 0.08 1.36 2.81 -68.25 -0.19 1.17 16 28 H 0.09 1.17 5.17 -51.93 -0.27 0.90 16 29 C -0.01 -0.09 9.34 -38.46 -0.36 -0.45 16 30 H 0.23 1.32 7.80 -54.09 -0.42 0.90 16 31 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.18 2.26 4.26 -52.49 -0.22 2.04 16 33 H 0.09 1.44 7.26 -51.93 -0.38 1.06 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.10 6.81 -51.93 -0.35 0.75 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.53 5.74 -51.93 -0.30 1.23 16 38 H 0.06 1.43 7.48 -51.93 -0.39 1.04 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 40 H 0.05 1.10 4.30 -51.93 -0.22 0.87 16 41 H 0.04 0.77 7.49 -51.93 -0.39 0.38 16 42 H 0.15 2.19 7.98 -52.48 -0.42 1.77 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -32.50 338.20 -7.48 -39.98 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.60 Total: 3.88 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -2.02 Total: 8.62 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.66 Total: -57.53 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.27 Total: -16.90 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.50 -7.48 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083187757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.759 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds