Wall clock time and date at job start Tue Mar 31 2020 16:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39645 * 120.49292 * 322.12076 * 3 2 1 5 5 N 1.31743 * 120.88529 * 180.02562 * 4 3 2 6 6 C 1.31735 * 122.04183 * 0.02562 * 5 4 3 7 7 C 1.39606 * 120.87768 * 0.02562 * 6 5 4 8 8 C 1.47853 * 120.49377 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99784 * 209.87695 * 8 7 6 10 10 N 1.34775 * 119.99865 * 29.87019 * 8 7 6 11 11 C 1.44967 * 117.33539 * 186.13012 * 10 8 7 12 12 C 1.51964 * 111.93726 * 203.73285 * 11 10 8 13 13 O 1.41318 * 111.60668 * 319.69929 * 12 11 10 14 14 C 1.40847 * 118.31177 * 56.89540 * 13 12 11 15 15 H 1.09000 * 109.54405 * 188.63109 * 14 13 12 16 16 C 1.53909 * 110.30288 * 68.00595 * 14 13 12 17 17 N 1.46774 * 107.62912 * 221.41133 * 16 14 13 18 18 C 1.36937 * 125.36646 * 178.78838 * 17 16 14 19 19 H 1.08001 * 120.00416 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99538 * 0.02562 * 18 17 16 21 21 N 1.31613 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99669 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46997 * 89.99975 * 22 20 18 24 24 H 1.48497 * 109.46812 * 209.99875 * 22 20 18 25 25 H 1.48494 * 109.47251 * 330.00071 * 22 20 18 26 26 C 1.46877 * 109.27378 * 358.80598 * 17 16 14 27 27 C 1.44544 * 117.34069 * 5.87779 * 10 8 7 28 28 H 1.09003 * 109.63584 * 286.46272 * 27 10 8 29 29 C 1.39674 * 120.49290 * 142.14767 * 3 2 1 30 30 H 4.52736 * 13.92928 * 359.97438 * 4 2 1 31 31 H 1.08002 * 119.55582 * 0.05071 * 4 3 2 32 32 H 1.07997 * 119.56505 * 180.02562 * 6 5 4 33 33 H 1.08997 * 108.99356 * 324.37089 * 11 10 8 34 34 H 1.08996 * 108.98472 * 83.10477 * 11 10 8 35 35 H 1.09000 * 109.05289 * 80.24696 * 12 11 10 36 36 H 1.09003 * 109.05113 * 199.21557 * 12 11 10 37 37 H 1.08999 * 109.82307 * 340.93644 * 16 14 13 38 38 H 1.08998 * 109.82687 * 101.79937 * 16 14 13 39 39 H 0.97008 * 119.99587 * 179.97438 * 21 20 18 40 40 H 1.08994 * 110.06447 * 137.03665 * 26 17 16 41 41 H 1.09000 * 110.06279 * 258.56222 * 26 17 16 42 42 H 1.08007 * 120.91501 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3150 -0.9488 0.7388 5 7 4.6324 -0.9550 0.7448 6 6 5.3385 -0.0765 0.0629 7 6 4.7111 0.9084 -0.7021 8 6 5.5120 1.8906 -1.4636 9 8 5.0735 3.0061 -1.6660 10 7 6.7282 1.5490 -1.9333 11 6 7.5202 2.5936 -2.5523 12 6 8.5473 2.0295 -3.5198 13 8 9.1471 0.8538 -3.0149 14 6 8.3122 -0.2264 -2.6688 15 1 8.8978 -0.9909 -2.1581 16 6 7.6681 -0.8291 -3.9300 17 7 6.2664 -1.1283 -3.6137 18 6 5.3519 -1.6546 -4.4865 19 1 4.3391 -1.8405 -4.1606 20 6 5.7265 -1.9493 -5.7903 21 7 6.9608 -1.7232 -6.1873 22 14 4.4792 -2.6679 -6.9807 23 1 3.7832 -1.5664 -7.6931 24 1 5.1767 -3.5321 -7.9665 25 1 3.4861 -3.4764 -6.2289 26 6 5.9991 -0.7739 -2.2137 27 6 7.1388 0.1724 -1.7739 28 1 7.3889 -0.0167 -0.7299 29 6 3.3143 0.9513 -0.7385 30 1 -1.0499 -0.0003 0.0009 31 1 2.7761 -1.6882 1.3127 32 1 6.4172 -0.1187 0.0961 33 1 6.8568 3.2686 -3.0930 34 1 8.0370 3.1550 -1.7740 35 1 8.0567 1.8006 -4.4659 36 1 9.3216 2.7770 -3.6925 37 1 7.7171 -0.1115 -4.7490 38 1 8.1889 -1.7449 -4.2096 39 1 7.2227 -1.9295 -7.0984 40 1 5.0386 -0.2649 -2.1336 41 1 6.0004 -1.6707 -1.5941 42 1 2.7971 1.6996 -1.3208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083187757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:09 Heat of formation + Delta-G solvation = 72.249868 kcal Electronic energy + Delta-G solvation = -28954.337287 eV Core-core repulsion = 25096.095551 eV Total energy + Delta-G solvation = -3858.241736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.93846 -40.94843 -39.79156 -37.81643 -36.40285 -35.32212 -34.41624 -33.53957 -32.13254 -31.43851 -29.66640 -29.00454 -26.88980 -25.71018 -25.30525 -24.44624 -22.94854 -21.95015 -20.51985 -20.03325 -19.38857 -18.46076 -18.23776 -18.01214 -17.36149 -17.25314 -16.89931 -16.51063 -16.02169 -15.92204 -15.70115 -15.36572 -15.25254 -14.94730 -14.57340 -14.38846 -14.20647 -13.93738 -13.60631 -13.42886 -13.07661 -12.98443 -12.90225 -12.64897 -12.49405 -12.17511 -12.07757 -11.93012 -11.83566 -11.76803 -11.36787 -10.88068 -10.75356 -10.62811 -10.55266 -9.86217 -9.62766 -8.95181 -7.92074 -5.28428 -0.58325 -0.18874 1.35982 1.40257 1.40988 1.49784 1.60937 1.74342 2.03704 2.41156 2.69780 2.84113 2.99041 3.11260 3.25968 3.28845 3.33900 3.53810 3.66261 3.69805 3.71246 3.89483 3.90629 4.08430 4.16024 4.32350 4.34168 4.44826 4.49768 4.63578 4.72038 4.73497 4.81757 4.84146 4.94200 5.02504 5.32984 5.36621 5.40362 5.46647 5.64143 5.97338 6.11752 6.34319 6.48678 6.68222 6.82366 7.02577 7.68140 8.27746 9.16356 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.006042 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.540497 B = 4632.906291 C = 6512.890291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.207 4.207 3 C -0.045 4.045 4 C 0.140 3.860 5 N -0.483 5.483 6 C 0.129 3.871 7 C -0.179 4.179 8 C 0.562 3.438 9 O -0.563 6.563 10 N -0.580 5.580 11 C 0.085 3.915 12 C 0.060 3.940 13 O -0.367 6.367 14 C 0.082 3.918 15 H 0.144 0.856 16 C 0.159 3.841 17 N -0.614 5.614 18 C -0.243 4.243 19 H 0.074 0.926 20 C -0.056 4.056 21 N -0.944 5.944 22 Si 0.971 3.029 23 H -0.290 1.290 24 H -0.289 1.289 25 H -0.269 1.269 26 C 0.112 3.888 27 C 0.093 3.907 28 H 0.135 0.865 29 C -0.023 4.023 30 H 0.267 0.733 31 H 0.192 0.808 32 H 0.196 0.804 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.026 0.974 36 H 0.145 0.855 37 H 0.020 0.980 38 H 0.021 0.979 39 H 0.248 0.752 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 4.735 14.796 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.207 4.207 3 C -0.047 4.047 4 C -0.017 4.017 5 N -0.190 5.190 6 C -0.029 4.029 7 C -0.184 4.184 8 C 0.351 3.649 9 O -0.443 6.443 10 N -0.312 5.312 11 C -0.037 4.037 12 C -0.017 4.017 13 O -0.283 6.283 14 C 0.022 3.978 15 H 0.162 0.838 16 C 0.034 3.966 17 N -0.342 5.342 18 C -0.371 4.371 19 H 0.092 0.908 20 C -0.250 4.250 21 N -0.592 5.592 22 Si 0.800 3.200 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.194 1.194 26 C -0.013 4.013 27 C -0.011 4.011 28 H 0.152 0.848 29 C -0.049 4.049 30 H 0.283 0.717 31 H 0.209 0.791 32 H 0.212 0.788 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.044 0.956 36 H 0.163 0.837 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.771 4.596 14.961 15.894 hybrid contribution -1.515 0.277 -2.014 2.536 sum -4.286 4.873 12.947 14.482 Atomic orbital electron populations 1.25873 0.96399 0.95766 0.95777 1.19860 0.91920 1.04521 1.04432 1.16898 0.89123 0.98076 1.00574 1.23569 0.89633 0.95014 0.93449 1.67844 1.08026 1.23302 1.19859 1.24217 1.02492 0.87024 0.89132 1.20629 0.94796 0.99781 1.03185 1.18328 0.81021 0.86742 0.78801 1.90724 1.70637 1.23222 1.59760 1.46633 1.16784 1.09767 1.57998 1.21623 0.94238 0.89682 0.98206 1.22435 0.97204 0.87525 0.94517 1.86898 1.34808 1.23123 1.83505 1.22859 0.91252 0.89163 0.94493 0.83836 1.21497 0.84010 0.97372 0.93735 1.44380 1.07952 1.74347 1.07487 1.19260 0.91860 1.34392 0.91623 0.90791 1.25546 0.98421 1.02228 0.98798 1.70151 1.17528 1.54281 1.17218 0.85189 0.78238 0.77781 0.78822 1.21710 1.21562 1.19428 1.22774 0.96364 0.95854 0.86306 1.22519 0.96526 0.80544 1.01530 0.84832 1.21714 0.92287 0.96270 0.94605 0.71711 0.79082 0.78759 0.90246 0.88556 0.95556 0.83734 0.96157 0.96058 0.94239 0.93417 0.93261 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 19.25 74.32 1.43 -0.66 16 2 C -0.21 -4.91 13.27 30.01 0.40 -4.51 16 3 C -0.04 -1.20 5.73 -21.35 -0.12 -1.32 16 4 C 0.14 3.37 10.91 85.05 0.93 4.30 16 5 N -0.48 -12.60 10.33 -193.75 -2.00 -14.60 16 6 C 0.13 3.43 7.26 85.04 0.62 4.05 16 7 C -0.18 -5.54 3.32 -20.03 -0.07 -5.61 16 8 C 0.56 19.49 6.85 86.79 0.59 20.09 16 9 O -0.56 -22.26 16.12 -3.89 -0.06 -22.33 16 10 N -0.58 -18.69 3.08 -808.84 -2.49 -21.19 16 11 C 0.08 2.45 6.22 86.32 0.54 2.99 16 12 C 0.06 1.77 6.72 71.64 0.48 2.25 16 13 O -0.37 -11.88 10.24 -146.15 -1.50 -13.37 16 14 C 0.08 2.79 3.82 30.85 0.12 2.91 16 15 H 0.14 4.09 8.14 -2.39 -0.02 4.07 16 16 C 0.16 7.54 5.02 86.63 0.43 7.98 16 17 N -0.61 -30.52 3.39 -695.59 -2.36 -32.87 16 18 C -0.24 -13.52 10.25 84.03 0.86 -12.66 16 19 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.06 -3.18 5.48 84.86 0.47 -2.71 16 21 N -0.94 -55.90 10.26 21.65 0.22 -55.68 16 22 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.11 4.32 4.72 86.83 0.41 4.73 16 27 C 0.09 2.87 2.81 45.83 0.13 3.00 16 28 H 0.14 3.03 5.17 -2.39 -0.01 3.01 16 29 C -0.02 -0.70 9.34 22.99 0.21 -0.48 16 30 H 0.27 1.85 7.80 -4.42 -0.03 1.81 16 31 H 0.19 3.33 8.06 -2.91 -0.02 3.30 16 32 H 0.20 4.31 4.26 -2.91 -0.01 4.29 16 33 H 0.08 2.51 7.26 -2.39 -0.02 2.49 16 34 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.03 0.97 6.81 -2.39 -0.02 0.95 16 36 H 0.15 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.02 1.11 5.74 -2.39 -0.01 1.10 16 38 H 0.02 1.13 7.48 -2.39 -0.02 1.12 16 39 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 40 H 0.05 1.95 4.30 -2.39 -0.01 1.94 16 41 H 0.05 1.83 7.49 -2.39 -0.02 1.81 16 42 H 0.14 4.29 7.98 -2.91 -0.02 4.27 16 Total: -1.00 -74.30 338.20 2.34 -71.96 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.07 Total: 15.77 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 7.43 Total: 24.33 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -6.63 Total: -124.33 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.56 Total: -35.70 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -74.30 2.34 -71.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083187757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.214 kcal (2) G-P(sol) polarization free energy of solvation -74.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds