Wall clock time and date at job start Tue Mar 31 2020 16:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39993 * 120.45982 * 280.86006 * 3 2 1 5 5 C 1.38226 * 118.36495 * 180.02562 * 4 3 2 6 6 C 1.39490 * 119.20835 * 0.02562 * 5 4 3 7 7 C 1.47996 * 119.56717 * 180.02562 * 6 5 4 8 8 O 1.21531 * 119.99912 * 351.74197 * 7 6 5 9 9 N 1.34773 * 119.99571 * 171.75160 * 7 6 5 10 10 C 1.44962 * 117.32851 * 1.69575 * 9 7 6 11 11 C 1.51775 * 111.99930 * 203.55026 * 10 9 7 12 12 O 1.41325 * 111.63347 * 319.66717 * 11 10 9 13 13 C 1.40786 * 118.40054 * 56.77047 * 12 11 10 14 14 H 1.08996 * 109.35007 * 188.31408 * 13 12 11 15 15 C 1.54202 * 110.22786 * 67.69980 * 13 12 11 16 16 N 1.46874 * 106.39455 * 210.33754 * 15 13 12 17 17 C 1.36935 * 125.36294 * 197.82315 * 16 15 13 18 18 H 1.07998 * 120.00146 * 184.10200 * 17 16 15 19 19 C 1.38817 * 120.00226 * 4.10539 * 17 16 15 20 20 N 1.31614 * 119.99521 * 354.28084 * 19 17 16 21 21 Si 1.86800 * 120.00001 * 174.28129 * 19 17 16 22 22 H 1.48500 * 109.46827 * 94.99699 * 21 19 17 23 23 H 1.48495 * 109.46820 * 214.99804 * 21 19 17 24 24 H 1.48500 * 109.47038 * 335.00061 * 21 19 17 25 25 C 1.46782 * 109.27173 * 17.84342 * 16 15 13 26 26 C 1.44545 * 117.32293 * 181.96459 * 9 7 6 27 27 H 1.09003 * 109.48496 * 285.85013 * 26 9 7 28 28 N 1.32822 * 120.86072 * 359.97438 * 6 5 4 29 29 C 1.31297 * 121.78902 * 0.02562 * 28 6 5 30 30 H 4.52930 * 13.94811 * 0.02562 * 4 2 1 31 31 H 1.07999 * 120.81865 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.39513 * 179.97438 * 5 4 3 33 33 H 1.09004 * 108.99249 * 324.33449 * 10 9 7 34 34 H 1.09000 * 108.99647 * 83.09459 * 10 9 7 35 35 H 1.09000 * 109.15242 * 199.01938 * 11 10 9 36 36 H 1.08993 * 108.82498 * 80.10101 * 11 10 9 37 37 H 1.09000 * 110.06697 * 91.10416 * 15 13 12 38 38 H 1.08996 * 110.11832 * 329.59848 * 15 13 12 39 39 H 0.97007 * 119.99688 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.82960 * 239.35831 * 25 16 15 41 41 H 1.08992 * 109.83011 * 118.38762 * 25 16 15 42 42 H 1.08000 * 119.64702 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3157 -0.2264 1.1851 5 6 4.6970 -0.2157 1.1356 6 6 5.3327 0.0195 -0.0836 7 6 6.8113 0.0322 -0.1458 8 8 7.4630 -0.0112 0.8791 9 7 7.4349 0.0919 -1.3391 10 6 6.6016 0.1797 -2.5219 11 6 7.3189 -0.3230 -3.7614 12 8 8.6705 0.0891 -3.7843 13 6 9.4947 -0.2571 -2.6967 14 1 10.4529 0.2533 -2.7930 15 6 9.7205 -1.7821 -2.6632 16 7 9.8989 -2.1438 -1.2509 17 6 10.4563 -3.3087 -0.7954 18 1 10.4852 -3.5153 0.2642 19 6 10.9844 -4.2240 -1.6957 20 7 10.8495 -4.0267 -2.9899 21 14 11.8863 -5.7355 -1.0701 22 1 10.9441 -6.8813 -1.0023 23 1 13.0006 -6.0649 -1.9947 24 1 12.4310 -5.4617 0.2840 25 6 9.3851 -1.0601 -0.4047 26 6 8.8800 0.0571 -1.3349 27 1 9.2658 1.0172 -0.9920 28 7 4.6282 0.2314 -1.1895 29 6 3.3153 0.2293 -1.1843 30 1 -1.0500 -0.0005 0.0001 31 1 2.7968 -0.4055 2.1152 32 1 5.2772 -0.3867 2.0303 33 1 5.7008 -0.4141 -2.3661 34 1 6.3163 1.2200 -2.6786 35 1 6.8141 0.0619 -4.6475 36 1 7.2784 -1.4121 -3.7737 37 1 10.6141 -2.0405 -3.2313 38 1 8.8535 -2.2986 -3.0750 39 1 11.2182 -4.6665 -3.6190 40 1 10.1830 -0.6783 0.2323 41 1 8.5640 -1.4287 0.2101 42 1 2.7771 0.4059 -2.1038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083252030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:15 Heat of formation + Delta-G solvation = 92.183449 kcal Electronic energy + Delta-G solvation = -28086.437389 eV Core-core repulsion = 24229.060038 eV Total energy + Delta-G solvation = -3857.377351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.28706 -39.98164 -38.20974 -35.89262 -35.12264 -34.44479 -32.57069 -32.30795 -30.92536 -29.94134 -27.93960 -27.44897 -25.33418 -24.31824 -24.07438 -23.04994 -21.45762 -20.10481 -19.51699 -18.76840 -17.67952 -17.20035 -16.89127 -16.49915 -16.00223 -15.63714 -15.54432 -14.96986 -14.74587 -14.56649 -14.23355 -14.11059 -13.82287 -13.51508 -13.31196 -12.97575 -12.62791 -12.42832 -12.18616 -12.00165 -11.79640 -11.55588 -11.08987 -11.04634 -10.86980 -10.64374 -10.39476 -10.37326 -10.14355 -10.07535 -9.88233 -9.67363 -9.37030 -9.09290 -8.79342 -8.54949 -8.16406 -6.78904 -5.66179 -3.03370 0.06989 0.88004 2.26287 2.29441 2.96553 3.07765 3.42030 3.47468 3.50108 3.68841 3.70231 3.92373 4.23390 4.40835 4.44498 4.52585 4.76148 4.83962 5.05763 5.20802 5.32967 5.36836 5.42722 5.49342 5.58102 5.61094 5.69227 5.76609 5.78098 5.87249 6.01202 6.11461 6.19022 6.28625 6.33867 6.61960 6.81728 7.03139 7.13754 7.33773 7.39980 7.49552 7.66212 7.78024 7.95216 8.25301 8.34959 9.24236 9.84784 10.47878 11.40871 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003489 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.075944 B = 8024.312734 C = 8654.789252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C -0.025 4.025 4 C -0.058 4.058 5 C -0.107 4.107 6 C 0.094 3.906 7 C 0.556 3.444 8 O -0.520 6.520 9 N -0.563 5.563 10 C 0.070 3.930 11 C 0.053 3.947 12 O -0.373 6.373 13 C 0.070 3.930 14 H 0.113 0.887 15 C 0.138 3.862 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.129 3.871 26 C 0.107 3.893 27 H 0.074 0.926 28 N -0.445 5.445 29 C 0.116 3.884 30 H 0.227 0.773 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.125 0.875 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.021 0.979 39 H 0.252 0.748 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.034 11.052 2.528 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C -0.027 4.027 4 C -0.084 4.084 5 C -0.127 4.127 6 C -0.043 4.043 7 C 0.342 3.658 8 O -0.396 6.396 9 N -0.294 5.294 10 C -0.053 4.053 11 C -0.024 4.024 12 O -0.290 6.290 13 C 0.011 3.989 14 H 0.131 0.869 15 C 0.012 3.988 16 N -0.331 5.331 17 C -0.349 4.349 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.003 3.997 26 C 0.003 3.997 27 H 0.092 0.908 28 N -0.157 5.157 29 C -0.043 4.043 30 H 0.244 0.756 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.142 0.858 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.952 11.113 2.016 21.209 hybrid contribution -0.476 -1.157 1.195 1.730 sum -18.428 9.956 3.212 21.190 Atomic orbital electron populations 1.24951 0.95743 0.98301 0.98482 1.19692 0.91586 1.02022 1.02096 1.17143 0.87974 1.02252 0.95331 1.21680 0.93476 0.95285 0.97912 1.22054 0.94407 0.97046 0.99203 1.21447 0.94747 0.98233 0.89895 1.17888 0.85558 0.78215 0.84116 1.90792 1.65301 1.49504 1.33975 1.46651 1.06277 1.70144 1.06334 1.22515 0.94761 1.03110 0.84946 1.22366 0.82664 1.00071 0.97341 1.86833 1.20523 1.78445 1.43153 1.23027 0.92503 1.00218 0.83155 0.86910 1.22116 1.02342 0.87040 0.87272 1.44268 1.71238 1.16829 1.00787 1.19075 1.29780 0.93692 0.92359 0.90335 1.24814 1.01280 0.99110 0.95393 1.69876 1.50251 1.36855 1.00068 0.86071 0.79347 0.82531 0.77695 1.21780 1.21605 1.20578 1.21681 0.97259 0.87889 0.92898 1.21667 0.78738 1.00046 0.99221 0.90847 1.68280 1.07448 1.12276 1.27685 1.23161 0.89605 0.94331 0.97185 0.75621 0.83648 0.82644 0.85768 0.91542 0.88074 0.92732 0.88177 0.96109 0.93745 0.94613 0.92959 0.81511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 19.25 29.55 0.57 -0.44 16 2 C -0.15 -1.31 13.27 -38.84 -0.52 -1.83 16 3 C -0.02 -0.24 5.75 -106.69 -0.61 -0.85 16 4 C -0.06 -0.55 9.89 -38.93 -0.39 -0.93 16 5 C -0.11 -1.25 9.61 -39.12 -0.38 -1.63 16 6 C 0.09 1.32 6.55 -82.97 -0.54 0.78 16 7 C 0.56 9.75 6.90 -12.26 -0.08 9.67 16 8 O -0.52 -10.26 13.63 5.34 0.07 -10.19 16 9 N -0.56 -9.99 3.09 -170.17 -0.53 -10.52 16 10 C 0.07 1.04 5.08 -5.49 -0.03 1.01 16 11 C 0.05 0.83 6.73 36.54 0.25 1.08 16 12 O -0.37 -6.94 10.25 -34.36 -0.35 -7.29 16 13 C 0.07 1.42 3.91 -26.26 -0.10 1.32 16 14 H 0.11 2.15 8.14 -51.93 -0.42 1.73 16 15 C 0.14 3.44 5.32 -3.21 -0.02 3.42 16 16 N -0.60 -16.08 3.39 -171.42 -0.58 -16.66 16 17 C -0.22 -6.36 10.25 -15.06 -0.15 -6.51 16 18 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 19 C -0.01 -0.30 5.48 -17.43 -0.10 -0.40 16 20 N -0.92 -27.31 10.18 55.49 0.56 -26.75 16 21 Si 0.91 22.51 29.56 -169.99 -5.02 17.49 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.13 2.97 6.05 -3.42 -0.02 2.95 16 26 C 0.11 2.11 3.30 -68.67 -0.23 1.88 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 N -0.45 -5.48 5.73 -9.49 -0.05 -5.54 16 29 C 0.12 1.14 10.92 -17.15 -0.19 0.95 16 30 H 0.23 0.55 7.80 -54.09 -0.42 0.13 16 31 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.16 1.76 7.65 -52.49 -0.40 1.36 16 33 H 0.13 1.77 4.94 -66.02 -0.33 1.44 16 34 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 0.96 6.73 -51.93 -0.35 0.62 16 37 H 0.10 2.80 6.17 -51.93 -0.32 2.48 16 38 H 0.02 0.57 6.48 -51.93 -0.34 0.23 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 1.28 5.37 -51.93 -0.28 1.00 16 42 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -33.86 343.42 -8.20 -42.05 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.93 Total: 1.76 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -2.54 Total: 10.47 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.60 Total: -59.46 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.28 Total: -17.48 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.86 -8.20 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083252030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.236 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds