Wall clock time and date at job start Tue Mar 31 2020 16:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39993 * 120.45982 * 280.86006 * 3 2 1 5 5 C 1.38226 * 118.36495 * 180.02562 * 4 3 2 6 6 C 1.39490 * 119.20835 * 0.02562 * 5 4 3 7 7 C 1.47996 * 119.56717 * 180.02562 * 6 5 4 8 8 O 1.21531 * 119.99912 * 351.74197 * 7 6 5 9 9 N 1.34773 * 119.99571 * 171.75160 * 7 6 5 10 10 C 1.44962 * 117.32851 * 1.69575 * 9 7 6 11 11 C 1.51775 * 111.99930 * 203.55026 * 10 9 7 12 12 O 1.41325 * 111.63347 * 319.66717 * 11 10 9 13 13 C 1.40786 * 118.40054 * 56.77047 * 12 11 10 14 14 H 1.08996 * 109.35007 * 188.31408 * 13 12 11 15 15 C 1.54202 * 110.22786 * 67.69980 * 13 12 11 16 16 N 1.46874 * 106.39455 * 210.33754 * 15 13 12 17 17 C 1.36935 * 125.36294 * 197.82315 * 16 15 13 18 18 H 1.07998 * 120.00146 * 184.10200 * 17 16 15 19 19 C 1.38817 * 120.00226 * 4.10539 * 17 16 15 20 20 N 1.31614 * 119.99521 * 354.28084 * 19 17 16 21 21 Si 1.86800 * 120.00001 * 174.28129 * 19 17 16 22 22 H 1.48500 * 109.46827 * 94.99699 * 21 19 17 23 23 H 1.48495 * 109.46820 * 214.99804 * 21 19 17 24 24 H 1.48500 * 109.47038 * 335.00061 * 21 19 17 25 25 C 1.46782 * 109.27173 * 17.84342 * 16 15 13 26 26 C 1.44545 * 117.32293 * 181.96459 * 9 7 6 27 27 H 1.09003 * 109.48496 * 285.85013 * 26 9 7 28 28 N 1.32822 * 120.86072 * 359.97438 * 6 5 4 29 29 C 1.31297 * 121.78902 * 0.02562 * 28 6 5 30 30 H 4.52930 * 13.94811 * 0.02562 * 4 2 1 31 31 H 1.07999 * 120.81865 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.39513 * 179.97438 * 5 4 3 33 33 H 1.09004 * 108.99249 * 324.33449 * 10 9 7 34 34 H 1.09000 * 108.99647 * 83.09459 * 10 9 7 35 35 H 1.09000 * 109.15242 * 199.01938 * 11 10 9 36 36 H 1.08993 * 108.82498 * 80.10101 * 11 10 9 37 37 H 1.09000 * 110.06697 * 91.10416 * 15 13 12 38 38 H 1.08996 * 110.11832 * 329.59848 * 15 13 12 39 39 H 0.97007 * 119.99688 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.82960 * 239.35831 * 25 16 15 41 41 H 1.08992 * 109.83011 * 118.38762 * 25 16 15 42 42 H 1.08000 * 119.64702 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3157 -0.2264 1.1851 5 6 4.6970 -0.2157 1.1356 6 6 5.3327 0.0195 -0.0836 7 6 6.8113 0.0322 -0.1458 8 8 7.4630 -0.0112 0.8791 9 7 7.4349 0.0919 -1.3391 10 6 6.6016 0.1797 -2.5219 11 6 7.3189 -0.3230 -3.7614 12 8 8.6705 0.0891 -3.7843 13 6 9.4947 -0.2571 -2.6967 14 1 10.4529 0.2533 -2.7930 15 6 9.7205 -1.7821 -2.6632 16 7 9.8989 -2.1438 -1.2509 17 6 10.4563 -3.3087 -0.7954 18 1 10.4852 -3.5153 0.2642 19 6 10.9844 -4.2240 -1.6957 20 7 10.8495 -4.0267 -2.9899 21 14 11.8863 -5.7355 -1.0701 22 1 10.9441 -6.8813 -1.0023 23 1 13.0006 -6.0649 -1.9947 24 1 12.4310 -5.4617 0.2840 25 6 9.3851 -1.0601 -0.4047 26 6 8.8800 0.0571 -1.3349 27 1 9.2658 1.0172 -0.9920 28 7 4.6282 0.2314 -1.1895 29 6 3.3153 0.2293 -1.1843 30 1 -1.0500 -0.0005 0.0001 31 1 2.7968 -0.4055 2.1152 32 1 5.2772 -0.3867 2.0303 33 1 5.7008 -0.4141 -2.3661 34 1 6.3163 1.2200 -2.6786 35 1 6.8141 0.0619 -4.6475 36 1 7.2784 -1.4121 -3.7737 37 1 10.6141 -2.0405 -3.2313 38 1 8.8535 -2.2986 -3.0750 39 1 11.2182 -4.6665 -3.6190 40 1 10.1830 -0.6783 0.2323 41 1 8.5640 -1.4287 0.2101 42 1 2.7771 0.4059 -2.1038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083252030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:14 Heat of formation + Delta-G solvation = 69.812349 kcal Electronic energy + Delta-G solvation = -28087.407473 eV Core-core repulsion = 24229.060038 eV Total energy + Delta-G solvation = -3858.347435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.51440 -41.13247 -39.59834 -37.67288 -36.39508 -35.34216 -34.26962 -33.33945 -31.89773 -31.56032 -29.59257 -29.11762 -26.87182 -25.77650 -25.05457 -24.37423 -22.94284 -21.76216 -20.33375 -20.09908 -19.16003 -18.75087 -18.34650 -17.76417 -17.11363 -16.94294 -16.67756 -16.37572 -16.28700 -15.85772 -15.68819 -15.37548 -15.10432 -14.99874 -14.56478 -14.36245 -14.04636 -13.86897 -13.78063 -13.44963 -13.07242 -12.90200 -12.84480 -12.56684 -12.31444 -12.15772 -12.11930 -11.87913 -11.84562 -11.68378 -11.16896 -10.93265 -10.82998 -10.69663 -10.08355 -9.88321 -9.56318 -8.93561 -7.85879 -5.27213 -0.79261 0.09156 1.33513 1.43394 1.45499 1.55726 1.68451 1.72293 2.15552 2.44998 2.69287 2.85004 2.91640 3.22881 3.26620 3.36170 3.61819 3.72287 3.74199 3.77551 3.89537 3.97584 4.08700 4.09748 4.26227 4.36315 4.47160 4.56310 4.67143 4.68860 4.88337 4.89931 4.96664 4.98131 5.04414 5.10652 5.35322 5.43236 5.48010 5.61331 5.66719 6.09721 6.18737 6.37658 6.48343 6.58164 6.94483 7.05632 7.70371 8.32590 9.19126 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.003489 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.075944 B = 8024.312734 C = 8654.789252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.209 4.209 3 C -0.011 4.011 4 C -0.055 4.055 5 C -0.108 4.108 6 C 0.063 3.937 7 C 0.550 3.450 8 O -0.554 6.554 9 N -0.572 5.572 10 C 0.074 3.926 11 C 0.048 3.952 12 O -0.374 6.374 13 C 0.086 3.914 14 H 0.127 0.873 15 C 0.149 3.851 16 N -0.621 5.621 17 C -0.245 4.245 18 H 0.076 0.924 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.983 3.017 22 H -0.287 1.287 23 H -0.287 1.287 24 H -0.270 1.270 25 C 0.131 3.869 26 C 0.117 3.883 27 H 0.091 0.909 28 N -0.453 5.453 29 C 0.114 3.886 30 H 0.264 0.736 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.144 0.856 36 H 0.027 0.973 37 H 0.067 0.933 38 H -0.008 1.008 39 H 0.249 0.751 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.135 11.902 2.528 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.210 4.210 3 C -0.013 4.013 4 C -0.081 4.081 5 C -0.129 4.129 6 C -0.072 4.072 7 C 0.339 3.661 8 O -0.433 6.433 9 N -0.304 5.304 10 C -0.048 4.048 11 C -0.029 4.029 12 O -0.291 6.291 13 C 0.027 3.973 14 H 0.144 0.856 15 C 0.023 3.977 16 N -0.349 5.349 17 C -0.374 4.374 18 H 0.094 0.906 19 C -0.254 4.254 20 N -0.595 5.595 21 Si 0.810 3.190 22 H -0.214 1.214 23 H -0.213 1.213 24 H -0.195 1.195 25 C 0.005 3.995 26 C 0.013 3.987 27 H 0.108 0.892 28 N -0.164 5.164 29 C -0.045 4.045 30 H 0.280 0.720 31 H 0.190 0.810 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.106 0.894 35 H 0.162 0.838 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.009 0.991 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -21.075 11.986 2.016 24.329 hybrid contribution 0.201 -1.430 1.202 1.879 sum -20.875 10.556 3.218 23.612 Atomic orbital electron populations 1.25894 0.96428 0.94790 0.95655 1.19770 0.91761 1.04697 1.04723 1.17324 0.89063 0.99936 0.95019 1.21950 0.92377 0.94457 0.99271 1.22082 0.95526 0.97025 0.98295 1.20988 0.92840 1.01885 0.91490 1.18446 0.87230 0.77030 0.83428 1.90749 1.66566 1.51029 1.34927 1.46793 1.05561 1.70439 1.07570 1.22690 0.94322 1.04506 0.83301 1.22675 0.81628 0.98784 0.99794 1.86837 1.21858 1.78026 1.42362 1.22745 0.93828 0.96568 0.84199 0.85583 1.21847 0.99419 0.90362 0.86039 1.44526 1.71250 1.17139 1.01981 1.19387 1.30490 0.94987 0.92540 0.90601 1.25675 1.01949 1.02156 0.95614 1.70115 1.50690 1.37663 1.01028 0.85009 0.77859 0.78615 0.77508 1.21399 1.21344 1.19466 1.21694 0.96485 0.88135 0.93158 1.21420 0.80444 0.99199 0.97685 0.89166 1.68074 1.08672 1.12628 1.27053 1.23639 0.88681 0.93606 0.98616 0.71976 0.81011 0.83072 0.84869 0.89405 0.83806 0.95424 0.91453 0.99058 0.94098 0.95025 0.94496 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 19.25 74.32 1.43 0.52 16 2 C -0.21 -2.88 13.27 30.01 0.40 -2.48 16 3 C -0.01 -0.19 5.75 -21.20 -0.12 -0.31 16 4 C -0.06 -0.96 9.89 22.69 0.22 -0.74 16 5 C -0.11 -2.54 9.61 22.57 0.22 -2.33 16 6 C 0.06 1.79 6.55 41.89 0.27 2.07 16 7 C 0.55 19.83 6.90 86.83 0.60 20.43 16 8 O -0.55 -22.88 13.63 -3.81 -0.05 -22.94 16 9 N -0.57 -20.53 3.09 -810.59 -2.51 -23.04 16 10 C 0.07 2.13 5.08 86.26 0.44 2.57 16 11 C 0.05 1.47 6.73 71.58 0.48 1.95 16 12 O -0.37 -13.77 10.25 -145.86 -1.50 -15.26 16 13 C 0.09 3.55 3.91 30.90 0.12 3.67 16 14 H 0.13 4.82 8.14 -2.39 -0.02 4.80 16 15 C 0.15 7.80 5.32 86.72 0.46 8.26 16 16 N -0.62 -34.62 3.39 -696.24 -2.36 -36.97 16 17 C -0.25 -14.66 10.25 84.03 0.86 -13.80 16 18 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 19 C -0.06 -3.59 5.48 84.86 0.46 -3.13 16 20 N -0.95 -58.01 10.18 21.65 0.22 -57.78 16 21 Si 0.98 47.23 29.56 68.60 2.03 49.25 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 C 0.13 6.30 6.05 86.63 0.52 6.82 16 26 C 0.12 4.69 3.30 45.56 0.15 4.84 16 27 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 28 N -0.45 -10.61 5.73 -183.93 -1.05 -11.67 16 29 C 0.11 1.99 10.92 85.18 0.93 2.92 16 30 H 0.26 -0.25 7.80 -4.42 -0.03 -0.29 16 31 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.15 3.56 7.65 -2.91 -0.02 3.54 16 33 H 0.13 3.68 4.94 -30.22 -0.15 3.53 16 34 H 0.09 2.19 8.05 -2.39 -0.02 2.17 16 35 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.03 1.00 6.73 -2.39 -0.02 0.98 16 37 H 0.07 3.96 6.17 -2.39 -0.01 3.95 16 38 H -0.01 -0.48 6.48 -2.39 -0.02 -0.50 16 39 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 40 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 1.91 5.37 -2.39 -0.01 1.90 16 42 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -77.35 343.42 3.15 -74.20 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.92 Total: 12.94 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 7.46 Total: 31.27 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -5.70 Total: -129.46 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.55 Total: -38.20 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -77.35 3.15 -74.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083252030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.012 kcal (2) G-P(sol) polarization free energy of solvation -77.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds