Wall clock time and date at job start Tue Mar 31 2020 14:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33829 * 125.36856 * 2 1 4 4 C 1.34045 * 111.33436 * 179.97438 * 3 2 1 5 5 N 1.38850 * 125.78906 * 179.97438 * 4 3 2 6 6 C 1.36731 * 125.69314 * 179.71852 * 5 4 3 7 7 C 1.34801 * 108.19055 * 179.82982 * 6 5 4 8 8 C 1.41027 * 107.49810 * 0.42671 * 7 6 5 9 9 C 1.34793 * 107.50153 * 359.73351 * 8 7 6 10 10 C 1.38033 * 108.42539 * 359.75565 * 4 3 2 11 11 C 1.43203 * 127.35516 * 180.22871 * 10 4 3 12 12 N 4.77758 * 155.15562 * 179.49997 * 2 1 3 13 13 C 1.35970 * 125.36718 * 180.02562 * 2 1 3 14 14 C 1.47236 * 127.16163 * 359.96242 * 13 2 1 15 15 O 1.21633 * 119.99862 * 90.00127 * 14 13 2 16 16 N 1.34773 * 120.00271 * 269.99820 * 14 13 2 17 17 C 1.46506 * 119.99969 * 0.02562 * 16 14 13 18 18 C 1.46499 * 120.00036 * 179.72406 * 16 14 13 19 19 H 1.08998 * 109.47061 * 0.27944 * 18 16 14 20 20 C 1.53003 * 109.47078 * 240.27603 * 18 16 14 21 21 C 1.50700 * 109.46962 * 120.27883 * 18 16 14 22 22 H 1.08000 * 120.00312 * 0.02562 * 21 18 16 23 23 C 1.37884 * 119.99965 * 179.97438 * 21 18 16 24 24 N 1.31518 * 119.99753 * 359.97438 * 23 21 18 25 25 Si 1.86796 * 120.00120 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.47128 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47370 * 120.00024 * 25 23 21 28 28 H 1.48500 * 109.47196 * 240.00176 * 25 23 21 29 29 H 1.09004 * 109.47123 * 269.99938 * 1 2 3 30 30 H 1.09000 * 109.47345 * 29.99667 * 1 2 3 31 31 H 1.08999 * 109.47326 * 150.00033 * 1 2 3 32 32 H 1.08005 * 125.90876 * 359.96615 * 6 5 4 33 33 H 1.07997 * 126.24965 * 180.19594 * 7 6 5 34 34 H 1.07997 * 126.24518 * 179.71192 * 8 7 6 35 35 H 1.08002 * 125.89967 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.46892 * 269.72362 * 17 16 14 37 37 H 1.09000 * 109.46803 * 29.71536 * 17 16 14 38 38 H 1.09000 * 109.47214 * 149.72329 * 17 16 14 39 39 H 1.09005 * 109.46932 * 60.00126 * 20 18 16 40 40 H 1.08996 * 109.47248 * 179.97438 * 20 18 16 41 41 H 1.08998 * 109.47453 * 300.00101 * 20 18 16 42 42 H 0.96995 * 119.99381 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2816 1.0913 0.0000 4 6 3.5821 0.7662 0.0006 5 7 4.6430 1.6620 0.0002 6 6 5.9689 1.3282 0.0062 7 6 6.6896 2.4674 -0.0002 8 6 5.7797 3.5449 -0.0005 9 6 4.5360 3.0252 -0.0003 10 6 3.6877 -0.6100 0.0065 11 6 4.8892 -1.3892 0.0137 12 7 5.8424 -2.0072 0.0175 13 6 2.2940 -1.1088 -0.0005 14 6 1.8519 -2.5132 -0.0004 15 8 1.6688 -3.0932 -1.0537 16 7 1.6503 -3.1561 1.1668 17 6 1.8704 -2.4574 2.4356 18 6 1.2046 -4.5517 1.1669 19 1 1.0960 -4.8984 0.1393 20 6 -0.1418 -4.6570 1.8859 21 6 2.2227 -5.4040 1.8797 22 1 3.1125 -4.9514 2.2918 23 6 2.0177 -6.7616 2.0067 24 7 0.9335 -7.3126 1.5061 25 14 3.2793 -7.8181 2.8908 26 1 4.4002 -6.9635 3.3583 27 1 2.6410 -8.4798 4.0569 28 1 3.8001 -8.8509 1.9595 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 6.3696 0.3253 0.0126 33 1 7.7671 2.5414 -0.0008 34 1 6.0332 4.5947 -0.0005 35 1 3.6144 3.5882 0.0000 36 1 2.9040 -2.5963 2.7523 37 1 1.6706 -1.3939 2.3040 38 1 1.2004 -2.8619 3.1942 39 1 -0.8782 -4.0405 1.3704 40 1 -0.4736 -5.6953 1.8856 41 1 -0.0332 -4.3103 2.9135 42 1 0.7895 -8.2676 1.5951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121189456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:36 Heat of formation + Delta-G solvation = 82.742702 kcal Electronic energy + Delta-G solvation = -27604.154946 eV Core-core repulsion = 23746.368213 eV Total energy + Delta-G solvation = -3857.786733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30129 -41.49380 -39.06293 -36.74621 -35.45169 -33.82151 -33.71163 -32.68225 -31.01271 -29.57744 -29.24002 -26.78310 -26.18730 -25.27124 -24.44586 -23.15609 -21.67502 -20.84761 -20.21849 -19.41595 -18.18562 -17.47597 -17.28584 -16.47858 -16.12356 -15.63838 -15.18005 -14.84175 -14.64014 -14.39533 -14.31286 -14.14921 -13.69281 -13.60280 -13.20958 -13.15532 -12.97222 -12.82108 -12.71947 -12.68036 -12.48486 -12.31534 -11.74130 -11.63822 -11.62931 -11.11090 -10.85442 -10.80852 -10.36576 -10.30249 -10.23001 -9.79321 -9.36939 -9.19233 -8.69687 -8.47837 -8.21178 -7.74553 -6.11932 -4.19580 0.43944 1.25539 1.47123 2.13090 2.45270 2.60352 2.76658 3.05956 3.24720 3.32041 3.33354 3.37469 3.52493 3.84936 4.36237 4.42330 4.43947 4.73484 4.80774 4.87333 5.07726 5.12334 5.20104 5.23562 5.24351 5.28753 5.52441 5.62897 5.75814 5.83240 5.85197 5.97675 6.22248 6.24677 6.48236 6.67786 6.72323 6.79286 6.82218 6.95359 7.28466 7.40116 7.41017 7.65569 7.93905 8.10526 8.36455 8.70066 8.88742 9.47180 10.93510 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.003631 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.196107 B = 7708.986648 C = 8852.230551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 O -0.159 6.159 4 C 0.281 3.719 5 N -0.374 5.374 6 C -0.003 4.003 7 C -0.175 4.175 8 C -0.179 4.179 9 C -0.010 4.010 10 C -0.098 4.098 11 C 0.278 3.722 12 N -0.391 5.391 13 C -0.142 4.142 14 C 0.570 3.430 15 O -0.532 6.532 16 N -0.576 5.576 17 C 0.086 3.914 18 C 0.257 3.743 19 H 0.066 0.934 20 C -0.147 4.147 21 C -0.526 4.526 22 H 0.059 0.941 23 C 0.066 3.934 24 N -0.887 5.887 25 Si 0.898 3.102 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.168 0.832 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.174 0.826 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.013 0.987 40 H 0.096 0.904 41 H 0.032 0.968 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 22.338 0.039 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 O -0.054 6.054 4 C 0.132 3.868 5 N -0.052 5.052 6 C -0.126 4.126 7 C -0.199 4.199 8 C -0.203 4.203 9 C -0.134 4.134 10 C -0.107 4.107 11 C -0.037 4.037 12 N -0.068 5.068 13 C -0.148 4.148 14 C 0.354 3.646 15 O -0.410 6.410 16 N -0.306 5.306 17 C -0.058 4.058 18 C 0.158 3.842 19 H 0.083 0.917 20 C -0.205 4.205 21 C -0.565 4.565 22 H 0.078 0.922 23 C -0.136 4.136 24 N -0.525 5.525 25 Si 0.725 3.275 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.185 0.815 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.191 0.809 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.051 0.949 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.803 20.959 -0.498 21.042 hybrid contribution 0.496 -0.441 0.585 0.885 sum 2.299 20.517 0.087 20.646 Atomic orbital electron populations 1.20562 0.82483 1.05382 1.04799 1.22383 0.93547 0.80566 1.04201 1.83486 1.13185 1.35819 1.72926 1.17912 0.79678 0.86224 1.03027 1.40560 1.02613 1.05047 1.57005 1.22161 0.79169 1.01207 1.10080 1.21113 0.99758 0.91243 1.07751 1.21099 0.91530 0.99543 1.08132 1.22185 1.00769 0.80684 1.09754 1.16316 0.88871 0.87732 1.17772 1.24075 0.91831 0.93633 0.94160 1.81302 1.10728 1.06059 1.08673 1.21064 0.89707 0.95911 1.08144 1.17082 0.78988 0.83549 0.84969 1.90815 1.52428 1.66775 1.31022 1.48253 1.63491 1.14810 1.04047 1.21584 1.01752 0.95167 0.87263 1.19057 0.92128 0.73838 0.99188 0.91660 1.22103 0.96809 1.03647 0.97965 1.21323 1.05845 0.92445 1.36853 0.92240 1.24868 0.95636 0.97687 0.95442 1.69876 1.25804 1.11748 1.45096 0.86444 0.81372 0.80340 0.79327 1.19794 1.20825 1.20829 0.88734 0.89439 0.87903 0.81473 0.83091 0.83295 0.80865 0.93223 0.93000 0.90292 0.96772 0.88581 0.94928 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.21 36.00 0.37 -0.29 16 2 C 0.04 0.52 6.98 -35.12 -0.25 0.28 16 3 O -0.16 -1.81 10.39 7.65 0.08 -1.73 16 4 C 0.28 3.61 7.86 -14.44 -0.11 3.49 16 5 N -0.37 -4.41 2.94 -62.70 -0.18 -4.59 16 6 C 0.00 -0.03 10.60 -16.59 -0.18 -0.21 16 7 C -0.17 -1.71 10.86 -39.74 -0.43 -2.14 16 8 C -0.18 -1.56 10.86 -39.75 -0.43 -1.99 16 9 C -0.01 -0.09 11.30 -16.59 -0.19 -0.28 16 10 C -0.10 -1.52 6.23 -104.03 -0.65 -2.17 16 11 C 0.28 4.81 13.20 -22.47 -0.30 4.52 16 12 N -0.39 -7.30 18.03 41.84 0.75 -6.55 16 13 C -0.14 -2.27 4.33 -103.04 -0.45 -2.71 16 14 C 0.57 11.70 7.02 -12.61 -0.09 11.61 16 15 O -0.53 -13.04 16.43 5.25 0.09 -12.96 16 16 N -0.58 -12.00 2.75 -176.60 -0.49 -12.48 16 17 C 0.09 1.44 9.51 59.85 0.57 2.01 16 18 C 0.26 6.40 2.64 -69.08 -0.18 6.22 16 19 H 0.07 1.88 6.90 -51.93 -0.36 1.53 16 20 C -0.15 -3.31 8.95 37.16 0.33 -2.98 16 21 C -0.53 -14.23 8.37 -34.44 -0.29 -14.52 16 22 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 23 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 24 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 25 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.04 7.89 -51.93 -0.41 0.63 16 32 H 0.17 2.12 5.53 -52.48 -0.29 1.83 16 33 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.69 6.61 -51.93 -0.34 0.34 16 38 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 41 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -32.68 365.71 -5.88 -38.57 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.89 Total: -0.46 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.36 Total: 2.53 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.71 Total: -47.79 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.17 Total: -14.69 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.68 -5.88 -38.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121189456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.310 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds