Wall clock time and date at job start Tue Mar 31 2020 14:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33829 * 125.37311 * 2 1 4 4 C 1.34043 * 111.33439 * 180.02562 * 3 2 1 5 5 N 1.38850 * 125.78785 * 180.02562 * 4 3 2 6 6 C 1.36736 * 125.69625 * 179.66608 * 5 4 3 7 7 C 1.34793 * 108.18689 * 179.82780 * 6 5 4 8 8 C 1.41010 * 107.50724 * 0.42434 * 7 6 5 9 9 C 1.34798 * 107.50671 * 359.73478 * 8 7 6 10 10 C 1.38028 * 108.42710 * 359.97438 * 4 3 2 11 11 C 1.43202 * 127.35430 * 180.02562 * 10 4 3 12 12 N 4.77754 * 155.15365 * 180.02562 * 2 1 3 13 13 C 1.35975 * 125.36419 * 180.02562 * 2 1 3 14 14 C 1.47231 * 127.16252 * 359.71342 * 13 2 1 15 15 O 1.21630 * 120.00009 * 90.00093 * 14 13 2 16 16 N 1.34781 * 120.00482 * 270.00277 * 14 13 2 17 17 C 1.46493 * 119.99475 * 359.97438 * 16 14 13 18 18 C 1.46495 * 120.00275 * 179.97438 * 16 14 13 19 19 H 1.09003 * 109.47047 * 359.97438 * 18 16 14 20 20 C 1.53000 * 109.47208 * 119.99796 * 18 16 14 21 21 C 1.50699 * 109.47193 * 240.00025 * 18 16 14 22 22 H 1.08001 * 119.99882 * 0.02562 * 21 18 16 23 23 C 1.37882 * 119.99970 * 180.02562 * 21 18 16 24 24 N 1.31514 * 119.99537 * 180.02562 * 23 21 18 25 25 Si 1.86791 * 119.99858 * 359.97438 * 23 21 18 26 26 H 1.48497 * 109.47434 * 90.00265 * 25 23 21 27 27 H 1.48500 * 109.47251 * 210.00055 * 25 23 21 28 28 H 1.48501 * 109.47327 * 330.00085 * 25 23 21 29 29 H 1.08996 * 109.47154 * 269.98294 * 1 2 3 30 30 H 1.09009 * 109.46765 * 29.97257 * 1 2 3 31 31 H 1.08996 * 109.47527 * 149.97471 * 1 2 3 32 32 H 1.08001 * 125.90329 * 359.97438 * 6 5 4 33 33 H 1.08001 * 126.24615 * 180.19891 * 7 6 5 34 34 H 1.08002 * 126.24941 * 179.69787 * 8 7 6 35 35 H 1.07996 * 125.91545 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.47759 * 89.99923 * 17 16 14 37 37 H 1.09003 * 109.47275 * 210.00048 * 17 16 14 38 38 H 1.09001 * 109.47746 * 330.00088 * 17 16 14 39 39 H 1.09003 * 109.46978 * 60.00127 * 20 18 16 40 40 H 1.08997 * 109.47505 * 179.97438 * 20 18 16 41 41 H 1.08999 * 109.47391 * 300.00525 * 20 18 16 42 42 H 0.97005 * 119.99333 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2817 1.0912 0.0000 4 6 3.5821 0.7661 -0.0006 5 7 4.6431 1.6618 -0.0002 6 6 5.9691 1.3280 0.0057 7 6 6.6897 2.4671 0.0001 8 6 5.7800 3.5446 0.0003 9 6 4.5362 3.0251 0.0001 10 6 3.6877 -0.6101 -0.0004 11 6 4.8892 -1.3894 -0.0003 12 7 5.8423 -2.0075 -0.0009 13 6 2.2940 -1.1089 -0.0005 14 6 1.8519 -2.5132 0.0047 15 8 1.6650 -3.0959 -1.0464 16 7 1.6542 -3.1533 1.1743 17 6 1.8798 -2.4516 2.4404 18 6 1.2139 -4.5504 1.1795 19 1 1.0998 -4.8992 0.1531 20 6 2.2550 -5.4107 1.8983 21 6 -0.1077 -4.6579 1.8957 22 1 -0.5732 -3.7738 2.3057 23 6 -0.7225 -5.8850 2.0277 24 7 -1.8760 -5.9787 2.6523 25 14 0.0823 -7.4140 1.3179 26 1 0.9688 -8.0265 2.3398 27 1 -0.9669 -8.3886 0.9248 28 1 0.8849 -7.0426 0.1250 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 6.3696 0.3251 0.0113 33 1 7.7672 2.5411 -0.0004 34 1 6.0335 4.5944 0.0012 35 1 3.6145 3.5880 0.0006 36 1 0.9557 -1.9686 2.7579 37 1 2.1960 -3.1661 3.2004 38 1 2.6556 -1.6980 2.3050 39 1 2.3686 -5.0618 2.9247 40 1 1.9272 -6.4502 1.9026 41 1 3.2109 -5.3329 1.3803 42 1 -2.3087 -6.8420 2.7448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121189457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:47 Heat of formation + Delta-G solvation = 91.109610 kcal Electronic energy + Delta-G solvation = -27629.071390 eV Core-core repulsion = 23771.647473 eV Total energy + Delta-G solvation = -3857.423916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.35550 -41.54653 -39.23813 -36.89898 -35.66386 -33.87350 -33.77048 -32.64437 -31.02669 -30.43643 -29.35366 -26.85331 -26.32753 -25.20131 -24.52801 -23.31543 -21.74952 -20.91438 -20.28809 -19.46933 -18.25669 -17.54405 -17.34446 -16.91484 -16.09903 -15.84263 -15.31184 -14.90924 -14.83047 -14.45298 -14.38099 -14.21917 -13.75227 -13.65760 -13.25947 -13.13053 -13.09993 -13.01821 -12.84208 -12.76806 -12.45733 -12.38320 -12.29455 -11.93439 -11.81964 -11.71486 -11.22128 -10.76768 -10.42869 -10.21154 -9.96605 -9.65499 -9.53175 -9.31932 -8.74935 -8.70286 -8.26473 -7.90546 -6.21715 -4.23059 0.36921 1.20632 1.42164 2.06756 2.29797 2.55423 2.70255 2.94105 3.17743 3.19827 3.33418 3.35656 3.40656 3.70023 4.29573 4.34796 4.39554 4.66169 4.74282 4.83768 5.04549 5.04950 5.11926 5.19915 5.24997 5.36492 5.52151 5.58523 5.71735 5.78549 5.90050 5.90185 6.11986 6.18108 6.20534 6.26906 6.39692 6.43295 6.74307 6.76358 6.76631 6.99429 7.17134 7.25000 7.52069 7.98622 8.34425 8.62084 8.78898 9.38966 10.90616 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022002 B = 0.003386 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.310846 B = 8267.392070 C = 8958.866819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 O -0.159 6.159 4 C 0.284 3.716 5 N -0.374 5.374 6 C -0.005 4.005 7 C -0.174 4.174 8 C -0.179 4.179 9 C -0.008 4.008 10 C -0.105 4.105 11 C 0.282 3.718 12 N -0.397 5.397 13 C -0.148 4.148 14 C 0.575 3.425 15 O -0.532 6.532 16 N -0.571 5.571 17 C 0.086 3.914 18 C 0.229 3.771 19 H 0.065 0.935 20 C -0.163 4.163 21 C -0.529 4.529 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.892 5.892 25 Si 0.880 3.120 26 H -0.276 1.276 27 H -0.293 1.293 28 H -0.263 1.263 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.175 0.825 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.033 0.967 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.103 19.372 -2.509 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.006 3.994 3 O -0.053 6.053 4 C 0.135 3.865 5 N -0.053 5.053 6 C -0.128 4.128 7 C -0.197 4.197 8 C -0.203 4.203 9 C -0.132 4.132 10 C -0.114 4.114 11 C -0.033 4.033 12 N -0.074 5.074 13 C -0.154 4.154 14 C 0.359 3.641 15 O -0.410 6.410 16 N -0.301 5.301 17 C -0.058 4.058 18 C 0.128 3.872 19 H 0.083 0.917 20 C -0.221 4.221 21 C -0.567 4.567 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.530 5.530 25 Si 0.710 3.290 26 H -0.203 1.203 27 H -0.220 1.220 28 H -0.188 1.188 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.185 0.815 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.192 0.808 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.952 18.061 -2.975 21.331 hybrid contribution 0.064 -0.705 -0.132 0.720 sum 11.017 17.356 -3.107 20.791 Atomic orbital electron populations 1.20625 0.82133 1.05516 1.05225 1.22489 0.93646 0.80440 1.02872 1.83516 1.13147 1.35898 1.72764 1.17925 0.79752 0.86204 1.02644 1.40576 1.02600 1.05083 1.57048 1.22128 0.79178 1.01140 1.10332 1.21113 0.99765 0.91256 1.07611 1.21108 0.91515 0.99586 1.08065 1.22215 1.00829 0.80646 1.09546 1.16283 0.88728 0.87806 1.18544 1.24099 0.91749 0.93518 0.93911 1.81295 1.10468 1.06552 1.09115 1.20903 0.89610 0.95659 1.09276 1.17049 0.78665 0.83692 0.84666 1.90809 1.52341 1.66632 1.31250 1.47860 1.63630 1.14057 1.04535 1.21631 1.00437 0.96962 0.86755 1.19394 0.93223 0.75643 0.98925 0.91734 1.22477 0.98334 1.00186 1.01120 1.21092 1.02679 0.95917 1.36989 0.90092 1.24831 0.94653 0.98679 0.94339 1.69862 1.16004 1.25385 1.41708 0.86963 0.78617 0.83168 0.80279 1.20334 1.22020 1.18761 0.88367 0.89424 0.87595 0.81540 0.83084 0.83247 0.80786 0.92269 0.90398 0.92890 0.92366 0.92882 0.94784 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.21 36.01 0.37 -0.41 16 2 C 0.06 0.68 7.32 -35.12 -0.26 0.42 16 3 O -0.16 -1.77 10.39 7.66 0.08 -1.69 16 4 C 0.28 3.45 7.86 -14.45 -0.11 3.34 16 5 N -0.37 -4.16 2.94 -62.70 -0.18 -4.34 16 6 C 0.00 -0.05 10.60 -16.59 -0.18 -0.23 16 7 C -0.17 -1.58 10.86 -39.75 -0.43 -2.01 16 8 C -0.18 -1.47 10.86 -39.75 -0.43 -1.90 16 9 C -0.01 -0.08 11.30 -16.58 -0.19 -0.26 16 10 C -0.10 -1.50 5.99 -104.03 -0.62 -2.12 16 11 C 0.28 4.35 13.19 -22.47 -0.30 4.05 16 12 N -0.40 -6.53 18.03 41.84 0.75 -5.77 16 13 C -0.15 -2.27 4.27 -103.04 -0.44 -2.71 16 14 C 0.57 11.28 7.03 -12.60 -0.09 11.20 16 15 O -0.53 -12.43 16.43 5.25 0.09 -12.34 16 16 N -0.57 -11.40 2.75 -176.61 -0.49 -11.88 16 17 C 0.09 1.38 9.50 59.84 0.57 1.94 16 18 C 0.23 5.38 2.23 -69.09 -0.15 5.22 16 19 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 20 C -0.16 -3.51 8.65 37.16 0.32 -3.19 16 21 C -0.53 -13.92 8.95 -34.44 -0.31 -14.22 16 22 H 0.08 2.25 7.89 -52.49 -0.41 1.84 16 23 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 24 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 25 Si 0.88 21.37 24.37 -169.99 -4.14 17.23 16 26 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.11 1.24 7.89 -51.93 -0.41 0.83 16 32 H 0.17 1.92 5.53 -52.49 -0.29 1.63 16 33 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 38 H 0.05 0.73 6.68 -51.93 -0.35 0.38 16 39 H 0.06 1.15 6.66 -51.93 -0.35 0.81 16 40 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -32.47 359.00 -4.82 -37.29 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.76 Total: 0.07 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.35 Total: 1.19 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.86 Total: -47.16 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.17 Total: -14.03 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.47 -4.82 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121189457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.396 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds