Wall clock time and date at job start Tue Mar 31 2020 14:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33829 * 125.37311 * 2 1 4 4 C 1.34043 * 111.33439 * 180.02562 * 3 2 1 5 5 N 1.38850 * 125.78785 * 180.02562 * 4 3 2 6 6 C 1.36736 * 125.69625 * 179.66608 * 5 4 3 7 7 C 1.34793 * 108.18689 * 179.82780 * 6 5 4 8 8 C 1.41010 * 107.50724 * 0.42434 * 7 6 5 9 9 C 1.34798 * 107.50671 * 359.73478 * 8 7 6 10 10 C 1.38028 * 108.42710 * 359.97438 * 4 3 2 11 11 C 1.43202 * 127.35430 * 180.02562 * 10 4 3 12 12 N 4.77754 * 155.15365 * 180.02562 * 2 1 3 13 13 C 1.35975 * 125.36419 * 180.02562 * 2 1 3 14 14 C 1.47231 * 127.16252 * 359.71342 * 13 2 1 15 15 O 1.21630 * 120.00009 * 90.00093 * 14 13 2 16 16 N 1.34781 * 120.00482 * 270.00277 * 14 13 2 17 17 C 1.46493 * 119.99475 * 359.97438 * 16 14 13 18 18 C 1.46495 * 120.00275 * 179.97438 * 16 14 13 19 19 H 1.09003 * 109.47047 * 359.97438 * 18 16 14 20 20 C 1.53000 * 109.47208 * 119.99796 * 18 16 14 21 21 C 1.50699 * 109.47193 * 240.00025 * 18 16 14 22 22 H 1.08001 * 119.99882 * 0.02562 * 21 18 16 23 23 C 1.37882 * 119.99970 * 180.02562 * 21 18 16 24 24 N 1.31514 * 119.99537 * 180.02562 * 23 21 18 25 25 Si 1.86791 * 119.99858 * 359.97438 * 23 21 18 26 26 H 1.48497 * 109.47434 * 90.00265 * 25 23 21 27 27 H 1.48500 * 109.47251 * 210.00055 * 25 23 21 28 28 H 1.48501 * 109.47327 * 330.00085 * 25 23 21 29 29 H 1.08996 * 109.47154 * 269.98294 * 1 2 3 30 30 H 1.09009 * 109.46765 * 29.97257 * 1 2 3 31 31 H 1.08996 * 109.47527 * 149.97471 * 1 2 3 32 32 H 1.08001 * 125.90329 * 359.97438 * 6 5 4 33 33 H 1.08001 * 126.24615 * 180.19891 * 7 6 5 34 34 H 1.08002 * 126.24941 * 179.69787 * 8 7 6 35 35 H 1.07996 * 125.91545 * 179.97438 * 9 8 7 36 36 H 1.08999 * 109.47759 * 89.99923 * 17 16 14 37 37 H 1.09003 * 109.47275 * 210.00048 * 17 16 14 38 38 H 1.09001 * 109.47746 * 330.00088 * 17 16 14 39 39 H 1.09003 * 109.46978 * 60.00127 * 20 18 16 40 40 H 1.08997 * 109.47505 * 179.97438 * 20 18 16 41 41 H 1.08999 * 109.47391 * 300.00525 * 20 18 16 42 42 H 0.97005 * 119.99333 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2817 1.0912 0.0000 4 6 3.5821 0.7661 -0.0006 5 7 4.6431 1.6618 -0.0002 6 6 5.9691 1.3280 0.0057 7 6 6.6897 2.4671 0.0001 8 6 5.7800 3.5446 0.0003 9 6 4.5362 3.0251 0.0001 10 6 3.6877 -0.6101 -0.0004 11 6 4.8892 -1.3894 -0.0003 12 7 5.8423 -2.0075 -0.0009 13 6 2.2940 -1.1089 -0.0005 14 6 1.8519 -2.5132 0.0047 15 8 1.6650 -3.0959 -1.0464 16 7 1.6542 -3.1533 1.1743 17 6 1.8798 -2.4516 2.4404 18 6 1.2139 -4.5504 1.1795 19 1 1.0998 -4.8992 0.1531 20 6 2.2550 -5.4107 1.8983 21 6 -0.1077 -4.6579 1.8957 22 1 -0.5732 -3.7738 2.3057 23 6 -0.7225 -5.8850 2.0277 24 7 -1.8760 -5.9787 2.6523 25 14 0.0823 -7.4140 1.3179 26 1 0.9688 -8.0265 2.3398 27 1 -0.9669 -8.3886 0.9248 28 1 0.8849 -7.0426 0.1250 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 6.3696 0.3251 0.0113 33 1 7.7672 2.5411 -0.0004 34 1 6.0335 4.5944 0.0012 35 1 3.6145 3.5880 0.0006 36 1 0.9557 -1.9686 2.7579 37 1 2.1960 -3.1661 3.2004 38 1 2.6556 -1.6980 2.3050 39 1 2.3686 -5.0618 2.9247 40 1 1.9272 -6.4502 1.9026 41 1 3.2109 -5.3329 1.3803 42 1 -2.3087 -6.8420 2.7448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121189457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:46 Heat of formation + Delta-G solvation = 71.590641 kcal Electronic energy + Delta-G solvation = -27629.917796 eV Core-core repulsion = 23771.647473 eV Total energy + Delta-G solvation = -3858.270322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.34160 -42.32271 -40.80003 -38.08169 -37.37874 -35.11682 -34.75644 -34.39093 -32.21925 -31.87275 -30.07679 -28.01161 -27.62713 -27.14112 -25.61127 -24.60620 -22.76262 -21.94773 -21.42619 -20.30638 -19.65162 -18.90168 -18.59904 -18.34988 -17.70399 -17.32219 -16.48564 -16.36723 -15.85554 -15.68446 -15.31080 -15.10187 -14.96872 -14.94133 -14.87430 -14.61306 -14.29195 -14.17478 -14.01224 -13.86285 -13.66246 -13.61757 -13.42006 -13.23837 -13.14783 -13.07487 -12.81211 -12.62645 -12.10327 -11.67706 -11.41297 -11.36578 -11.14497 -10.81143 -10.73866 -9.55964 -9.46276 -9.17672 -8.35227 -6.38921 -0.58066 0.26716 0.33018 1.10239 1.24907 1.25157 1.35085 1.37827 1.42401 1.82994 1.89584 2.03301 2.19076 2.26586 2.45831 2.99812 3.28688 3.46765 3.56430 3.83424 4.00338 4.18154 4.25053 4.26376 4.35805 4.45203 4.49067 4.49394 4.54015 4.58102 4.61783 4.66726 4.87480 4.99536 5.02812 5.11725 5.18360 5.23082 5.32950 5.40454 5.60528 5.74053 5.91609 6.02366 6.10173 6.16230 6.51622 6.63868 7.04203 7.27843 8.79966 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022002 B = 0.003386 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.310846 B = 8267.392070 C = 8958.866819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.086 3.914 3 O -0.140 6.140 4 C 0.311 3.689 5 N -0.384 5.384 6 C -0.038 4.038 7 C -0.164 4.164 8 C -0.175 4.175 9 C -0.013 4.013 10 C -0.128 4.128 11 C 0.291 3.709 12 N -0.428 5.428 13 C -0.180 4.180 14 C 0.577 3.423 15 O -0.580 6.580 16 N -0.577 5.577 17 C 0.084 3.916 18 C 0.232 3.768 19 H 0.035 0.965 20 C -0.158 4.158 21 C -0.520 4.520 22 H 0.059 0.941 23 C 0.032 3.968 24 N -0.932 5.932 25 Si 0.929 3.071 26 H -0.258 1.258 27 H -0.294 1.294 28 H -0.266 1.266 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.180 0.820 35 H 0.201 0.799 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.138 22.250 -2.185 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.035 3.965 3 O -0.034 6.034 4 C 0.160 3.840 5 N -0.064 5.064 6 C -0.159 4.159 7 C -0.188 4.188 8 C -0.198 4.198 9 C -0.135 4.135 10 C -0.137 4.137 11 C -0.023 4.023 12 N -0.105 5.105 13 C -0.186 4.186 14 C 0.364 3.636 15 O -0.461 6.461 16 N -0.306 5.306 17 C -0.058 4.058 18 C 0.129 3.871 19 H 0.053 0.947 20 C -0.215 4.215 21 C -0.559 4.559 22 H 0.077 0.923 23 C -0.168 4.168 24 N -0.571 5.571 25 Si 0.757 3.243 26 H -0.183 1.183 27 H -0.221 1.221 28 H -0.191 1.191 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.171 0.829 33 H 0.189 0.811 34 H 0.197 0.803 35 H 0.218 0.782 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.028 20.983 -2.622 24.327 hybrid contribution -0.239 -1.373 -0.248 1.416 sum 11.789 19.610 -2.871 23.060 Atomic orbital electron populations 1.20785 0.80315 1.06176 1.06396 1.22762 0.94285 0.79671 0.99814 1.83582 1.12596 1.34885 1.72341 1.17876 0.80252 0.85761 1.00061 1.40769 1.02110 1.05730 1.57835 1.22190 0.79617 1.01423 1.12719 1.21515 1.00951 0.90928 1.05397 1.21533 0.90865 1.00743 1.06702 1.22828 1.02426 0.79625 1.08658 1.16170 0.87692 0.88655 1.21232 1.24323 0.91748 0.93083 0.93107 1.81274 1.11327 1.07389 1.10527 1.20406 0.90859 0.93932 1.13419 1.17511 0.77372 0.85114 0.83631 1.90767 1.54277 1.68290 1.32808 1.47878 1.63394 1.13121 1.06239 1.21812 1.01750 0.97281 0.84951 1.19058 0.92791 0.78313 0.96907 0.94740 1.22365 0.98029 0.99220 1.01933 1.21251 1.03694 0.94995 1.35952 0.92289 1.25478 0.95093 1.01397 0.94819 1.69963 1.17459 1.26163 1.43562 0.86164 0.77992 0.80229 0.79953 1.18337 1.22115 1.19059 0.86805 0.85836 0.89815 0.82851 0.81125 0.80305 0.78199 0.91419 0.90370 0.90363 0.90747 0.93590 0.93600 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.21 71.24 0.73 -0.69 16 2 C 0.09 1.92 7.32 25.16 0.18 2.11 16 3 O -0.14 -2.71 10.39 4.48 0.05 -2.67 16 4 C 0.31 6.95 7.86 83.53 0.66 7.61 16 5 N -0.38 -7.65 2.94 -462.44 -1.36 -9.01 16 6 C -0.04 -0.77 10.60 83.14 0.88 0.11 16 7 C -0.16 -2.55 10.86 22.16 0.24 -2.31 16 8 C -0.18 -2.20 10.86 22.16 0.24 -1.96 16 9 C -0.01 -0.19 11.30 83.14 0.94 0.75 16 10 C -0.13 -3.58 5.99 -19.48 -0.12 -3.70 16 11 C 0.29 9.08 13.19 88.33 1.17 10.24 16 12 N -0.43 -14.33 18.03 19.00 0.34 -13.99 16 13 C -0.18 -5.43 4.27 -18.84 -0.08 -5.51 16 14 C 0.58 23.05 7.03 86.61 0.61 23.66 16 15 O -0.58 -28.15 16.43 -4.13 -0.07 -28.22 16 16 N -0.58 -23.21 2.75 -830.91 -2.29 -25.49 16 17 C 0.08 2.63 9.50 127.77 1.21 3.84 16 18 C 0.23 11.03 2.23 44.25 0.10 11.12 16 19 H 0.03 1.86 5.96 -2.39 -0.01 1.84 16 20 C -0.16 -6.68 8.65 71.98 0.62 -6.06 16 21 C -0.52 -27.88 8.95 25.60 0.23 -27.65 16 22 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 23 C 0.03 1.77 5.45 84.66 0.46 2.23 16 24 N -0.93 -55.06 13.96 21.45 0.30 -54.76 16 25 Si 0.93 44.34 24.37 68.60 1.67 46.02 16 26 H -0.26 -11.46 6.87 99.48 0.68 -10.77 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.27 -12.71 6.53 99.48 0.65 -12.06 16 29 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.08 1.92 7.89 -2.39 -0.02 1.91 16 32 H 0.15 3.53 5.53 -2.91 -0.02 3.52 16 33 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 2.43 6.43 -2.39 -0.02 2.41 16 38 H 0.08 2.05 6.68 -2.39 -0.02 2.03 16 39 H 0.07 2.87 6.66 -2.39 -0.02 2.85 16 40 H 0.05 2.00 3.27 -2.39 -0.01 1.99 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -72.73 359.00 7.71 -65.02 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.99 Total: 9.31 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 8.07 Total: 13.80 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -3.01 Total: -103.26 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.02 Total: -30.89 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.67 Total: 46.02 kcal Total: -72.73 7.71 -65.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121189457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.610 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds