Wall clock time and date at job start Tue Mar 31 2020 16:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47024 * 2 1 4 4 N 1.30176 * 126.80507 * 270.03040 * 3 2 1 5 5 O 1.20918 * 111.60672 * 179.97438 * 4 3 2 6 6 C 1.34049 * 111.56804 * 359.76035 * 5 4 3 7 7 C 1.50700 * 126.77970 * 180.29058 * 6 5 4 8 8 C 1.35445 * 106.44237 * 0.38028 * 6 5 4 9 9 C 1.50704 * 128.00665 * 179.90986 * 8 6 5 10 10 N 1.46898 * 109.47041 * 269.68106 * 9 8 6 11 11 C 1.46906 * 110.99888 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47378 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47551 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99757 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46848 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99904 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99695 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99570 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47083 * 60.00261 * 22 20 18 24 24 H 1.48505 * 109.46589 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47322 * 299.99919 * 22 20 18 26 26 H 1.08997 * 109.46955 * 299.99405 * 1 2 3 27 27 H 1.08991 * 109.47424 * 59.99885 * 1 2 3 28 28 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46955 * 240.00595 * 2 1 3 30 30 H 1.08991 * 109.47424 * 120.00114 * 2 1 3 31 31 H 1.09000 * 109.46859 * 270.11278 * 7 6 5 32 32 H 1.08999 * 109.46864 * 30.10795 * 7 6 5 33 33 H 1.08990 * 109.47000 * 150.11092 * 7 6 5 34 34 H 1.08997 * 109.46924 * 149.68017 * 9 8 6 35 35 H 1.08995 * 109.46962 * 29.68171 * 9 8 6 36 36 H 1.00904 * 110.99913 * 303.95016 * 10 9 8 37 37 H 1.09004 * 109.47040 * 299.99934 * 11 10 9 38 38 H 1.09000 * 109.47033 * 59.99886 * 11 10 9 39 39 H 1.09004 * 109.46862 * 299.99897 * 12 11 10 40 40 H 1.09004 * 109.46998 * 59.99419 * 12 11 10 41 41 H 0.96999 * 119.99694 * 359.97438 * 13 12 11 42 42 H 1.08996 * 109.47390 * 299.99902 * 16 14 13 43 43 H 1.09004 * 109.47662 * 59.99777 * 16 14 13 44 44 H 0.97002 * 119.99547 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2918 2.1563 -1.0423 5 8 2.6804 3.2565 -0.7253 6 6 2.7253 3.3984 0.6069 7 6 3.1510 4.6264 1.3697 8 6 2.3146 2.2194 1.1321 9 6 2.1827 1.8471 2.5864 10 7 3.4456 1.2643 3.0591 11 6 3.3542 0.8890 4.4765 12 6 4.6854 0.2878 4.9318 13 7 4.5941 -0.0870 6.3450 14 6 5.6552 -0.6398 6.9655 15 8 6.6854 -0.8274 6.3538 16 6 5.5614 -1.0248 8.4194 17 16 7.1362 -1.7362 8.9579 18 6 6.7543 -2.0849 10.6424 19 1 5.7754 -1.8507 11.0338 20 6 7.7121 -2.6595 11.4665 21 7 8.9054 -2.9444 10.9895 22 14 7.3075 -3.0285 13.2525 23 1 6.1651 -3.9751 13.3158 24 1 8.4907 -3.6365 13.9126 25 1 6.9450 -1.7679 13.9485 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.2243 4.5850 1.5551 32 1 2.9173 5.5163 0.7852 33 1 2.6192 4.6661 2.3203 34 1 1.3802 1.1190 2.7037 35 1 1.9528 2.7384 3.1702 36 1 3.7137 0.4740 2.4920 37 1 3.1327 1.7740 5.0731 38 1 2.5597 0.1544 4.6073 39 1 4.9073 -0.5970 4.3352 40 1 5.4797 1.0228 4.8009 41 1 3.7702 0.0634 6.8344 42 1 5.3390 -0.1401 9.0160 43 1 4.7673 -1.7601 8.5502 44 1 9.5745 -3.3464 11.5654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:22 Heat of formation + Delta-G solvation = 8.028843 kcal Electronic energy + Delta-G solvation = -24022.841233 eV Core-core repulsion = 20297.258615 eV Total energy + Delta-G solvation = -3725.582617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.26816 -39.23167 -37.55944 -35.81026 -34.59150 -33.51931 -32.43571 -31.73268 -30.35244 -28.78819 -27.62203 -25.66977 -25.36903 -24.56170 -22.41265 -21.72384 -20.38535 -20.32022 -17.97786 -17.88462 -17.31426 -16.62510 -16.28147 -16.02744 -15.36443 -15.29269 -14.81705 -14.73694 -14.66087 -14.28804 -14.06439 -13.82712 -13.61955 -13.46624 -13.24006 -13.06639 -12.91268 -12.58609 -12.44543 -12.21645 -12.01482 -11.87237 -11.81620 -11.51428 -11.16000 -11.05477 -11.04602 -10.77982 -10.30779 -9.83612 -9.59104 -9.42731 -9.07300 -8.93727 -8.91429 -8.24967 -6.51027 -6.22233 -3.93096 1.10668 1.78208 2.74217 2.96874 3.08280 3.22730 3.25878 3.28852 3.57697 3.73778 4.01123 4.09650 4.19697 4.38140 4.45227 4.64247 4.66260 4.76710 4.80830 4.88954 4.94655 5.04244 5.08010 5.12739 5.15302 5.15930 5.18614 5.33647 5.42813 5.47147 5.55005 5.59437 5.65014 5.72229 5.77035 5.86118 5.88644 6.11979 6.42044 6.58378 6.84603 7.58318 7.66684 7.94209 8.34148 8.59142 9.22807 10.85099 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.001648 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.998992 B =16988.944435 C =17317.437446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.029 3.971 4 N -0.366 5.366 5 O 0.095 5.905 6 C -0.007 4.007 7 C -0.073 4.073 8 C -0.204 4.204 9 C 0.141 3.859 10 N -0.681 5.681 11 C 0.050 3.950 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.346 0.654 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.397 0.603 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.524 12.585 -19.749 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.130 4.130 4 N -0.071 5.071 5 O 0.031 5.969 6 C -0.072 4.072 7 C -0.130 4.130 8 C -0.208 4.208 9 C 0.012 3.988 10 N -0.313 5.313 11 C -0.080 4.080 12 C -0.002 4.002 13 N -0.395 5.395 14 C 0.318 3.682 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.164 0.836 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.378 12.615 -21.942 30.701 hybrid contribution -2.420 -0.829 2.751 3.756 sum -19.798 11.786 -19.191 29.986 Atomic orbital electron populations 1.21720 0.93834 1.02462 1.02389 1.19942 0.96489 0.88244 1.03848 1.23445 1.01918 0.99096 0.88567 1.73846 1.16642 0.92754 1.23906 1.84820 1.62648 1.26827 1.22639 1.24315 1.00392 0.98862 0.83600 1.20360 1.03256 0.91079 0.98329 1.20740 1.09391 0.93853 0.96857 1.20053 0.90661 0.99872 0.88230 1.60340 1.31199 1.36887 1.02879 1.22113 0.96628 0.99890 0.89353 1.21120 0.97092 0.99933 0.82027 1.45892 1.16325 1.65814 1.11432 1.20298 0.82786 0.76303 0.88799 1.90712 1.29147 1.52240 1.66841 1.23528 1.08075 1.04580 0.94202 1.85418 1.08782 1.78314 1.10823 1.22828 1.02025 1.47921 0.95714 0.90968 1.24997 0.94453 0.94866 0.99275 1.70010 1.03827 1.39953 1.36459 0.86222 0.77976 0.78692 0.82588 1.19957 1.20802 1.19936 0.92385 0.92369 0.91477 0.89882 0.89847 0.88809 0.90033 0.89046 0.93628 0.89531 0.83562 0.90062 0.94351 0.91831 0.90623 0.76906 0.89179 0.89239 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.90 37.16 0.37 -0.46 16 2 C -0.05 -0.31 6.44 -27.88 -0.18 -0.49 16 3 C 0.03 0.26 6.58 -82.10 -0.54 -0.28 16 4 N -0.37 -3.97 12.07 33.42 0.40 -3.57 16 5 O 0.09 0.94 11.20 17.15 0.19 1.13 16 6 C -0.01 -0.06 7.49 -35.31 -0.26 -0.32 16 7 C -0.07 -0.32 10.30 36.01 0.37 0.05 16 8 C -0.20 -1.59 5.83 -104.42 -0.61 -2.20 16 9 C 0.14 0.86 6.01 -4.97 -0.03 0.83 16 10 N -0.68 -4.88 6.49 -115.06 -0.75 -5.63 16 11 C 0.05 0.35 5.80 -3.82 -0.02 0.33 16 12 C 0.12 1.33 5.93 -4.05 -0.02 1.31 16 13 N -0.74 -9.25 5.56 -60.30 -0.33 -9.58 16 14 C 0.53 9.72 7.85 -10.99 -0.09 9.63 16 15 O -0.52 -11.66 15.86 5.56 0.09 -11.58 16 16 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 22 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.30 7.43 -51.93 -0.39 -0.09 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.45 7.44 -51.93 -0.39 0.06 16 36 H 0.35 2.54 8.72 -39.29 -0.34 2.20 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -35.69 391.30 -8.52 -44.22 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.92 Total: -0.65 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.60 Total: -7.29 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.06 Total: -44.11 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.28 Total: -10.45 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.69 -8.52 -44.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.247 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds