Wall clock time and date at job start Tue Mar 31 2020 16:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47024 * 2 1 4 4 N 1.30176 * 126.80507 * 270.03040 * 3 2 1 5 5 O 1.20918 * 111.60672 * 179.97438 * 4 3 2 6 6 C 1.34049 * 111.56804 * 359.76035 * 5 4 3 7 7 C 1.50700 * 126.77970 * 180.29058 * 6 5 4 8 8 C 1.35445 * 106.44237 * 0.38028 * 6 5 4 9 9 C 1.50704 * 128.00665 * 179.90986 * 8 6 5 10 10 N 1.46898 * 109.47041 * 269.68106 * 9 8 6 11 11 C 1.46906 * 110.99888 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47378 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47551 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99757 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46848 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99904 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99695 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99570 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47083 * 60.00261 * 22 20 18 24 24 H 1.48505 * 109.46589 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47322 * 299.99919 * 22 20 18 26 26 H 1.08997 * 109.46955 * 299.99405 * 1 2 3 27 27 H 1.08991 * 109.47424 * 59.99885 * 1 2 3 28 28 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46955 * 240.00595 * 2 1 3 30 30 H 1.08991 * 109.47424 * 120.00114 * 2 1 3 31 31 H 1.09000 * 109.46859 * 270.11278 * 7 6 5 32 32 H 1.08999 * 109.46864 * 30.10795 * 7 6 5 33 33 H 1.08990 * 109.47000 * 150.11092 * 7 6 5 34 34 H 1.08997 * 109.46924 * 149.68017 * 9 8 6 35 35 H 1.08995 * 109.46962 * 29.68171 * 9 8 6 36 36 H 1.00904 * 110.99913 * 303.95016 * 10 9 8 37 37 H 1.09004 * 109.47040 * 299.99934 * 11 10 9 38 38 H 1.09000 * 109.47033 * 59.99886 * 11 10 9 39 39 H 1.09004 * 109.46862 * 299.99897 * 12 11 10 40 40 H 1.09004 * 109.46998 * 59.99419 * 12 11 10 41 41 H 0.96999 * 119.99694 * 359.97438 * 13 12 11 42 42 H 1.08996 * 109.47390 * 299.99902 * 16 14 13 43 43 H 1.09004 * 109.47662 * 59.99777 * 16 14 13 44 44 H 0.97002 * 119.99547 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2918 2.1563 -1.0423 5 8 2.6804 3.2565 -0.7253 6 6 2.7253 3.3984 0.6069 7 6 3.1510 4.6264 1.3697 8 6 2.3146 2.2194 1.1321 9 6 2.1827 1.8471 2.5864 10 7 3.4456 1.2643 3.0591 11 6 3.3542 0.8890 4.4765 12 6 4.6854 0.2878 4.9318 13 7 4.5941 -0.0870 6.3450 14 6 5.6552 -0.6398 6.9655 15 8 6.6854 -0.8274 6.3538 16 6 5.5614 -1.0248 8.4194 17 16 7.1362 -1.7362 8.9579 18 6 6.7543 -2.0849 10.6424 19 1 5.7754 -1.8507 11.0338 20 6 7.7121 -2.6595 11.4665 21 7 8.9054 -2.9444 10.9895 22 14 7.3075 -3.0285 13.2525 23 1 6.1651 -3.9751 13.3158 24 1 8.4907 -3.6365 13.9126 25 1 6.9450 -1.7679 13.9485 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.2243 4.5850 1.5551 32 1 2.9173 5.5163 0.7852 33 1 2.6192 4.6661 2.3203 34 1 1.3802 1.1190 2.7037 35 1 1.9528 2.7384 3.1702 36 1 3.7137 0.4740 2.4920 37 1 3.1327 1.7740 5.0731 38 1 2.5597 0.1544 4.6073 39 1 4.9073 -0.5970 4.3352 40 1 5.4797 1.0228 4.8009 41 1 3.7702 0.0634 6.8344 42 1 5.3390 -0.1401 9.0160 43 1 4.7673 -1.7601 8.5502 44 1 9.5745 -3.3464 11.5654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123787873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:21 Heat of formation + Delta-G solvation = -18.286490 kcal Electronic energy + Delta-G solvation = -24023.982351 eV Core-core repulsion = 20297.258615 eV Total energy + Delta-G solvation = -3726.723736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.91303 -40.60100 -38.20745 -36.55914 -35.44133 -34.56946 -34.24609 -32.30641 -31.55439 -29.67452 -28.32661 -27.63126 -26.21824 -25.09713 -23.13365 -22.35478 -21.73978 -20.87622 -19.82709 -18.64503 -18.00681 -17.78425 -17.32289 -17.06860 -16.86203 -16.42171 -15.95589 -15.87062 -15.40867 -15.14369 -15.06071 -14.66745 -14.55177 -14.35061 -14.04023 -14.01894 -13.69537 -13.51717 -13.39702 -13.15463 -12.88928 -12.85367 -12.67000 -12.57066 -12.49185 -12.44533 -12.30836 -11.73481 -11.70648 -11.11425 -11.01033 -10.90605 -10.25919 -10.15830 -10.11287 -9.43900 -8.65404 -8.33021 -6.11286 0.50760 1.16239 1.28887 1.45282 1.48526 1.57963 1.63241 2.19451 2.26112 2.30139 3.01021 3.16135 3.30308 3.43996 3.50022 3.84190 3.89552 3.98764 4.09736 4.16070 4.20938 4.29252 4.33732 4.39906 4.49808 4.53658 4.54364 4.66305 4.69151 4.76306 4.90375 4.94934 4.96633 4.98818 5.03070 5.06510 5.23417 5.31462 5.42403 5.43347 5.92940 6.21110 6.28330 6.53028 7.08109 7.27230 7.31752 8.75864 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.001648 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.998992 B =16988.944435 C =17317.437446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C 0.024 3.976 4 N -0.403 5.403 5 O 0.075 5.925 6 C -0.010 4.010 7 C -0.072 4.072 8 C -0.211 4.211 9 C 0.146 3.854 10 N -0.690 5.690 11 C 0.064 3.936 12 C 0.124 3.876 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.129 4.129 17 S -0.156 6.156 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.261 1.261 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.344 0.656 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.418 0.582 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.313 13.303 -18.164 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 C -0.135 4.135 4 N -0.111 5.111 5 O 0.014 5.986 6 C -0.075 4.075 7 C -0.129 4.129 8 C -0.216 4.216 9 C 0.018 3.982 10 N -0.322 5.322 11 C -0.065 4.065 12 C 0.000 4.000 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.280 4.280 17 S 0.071 5.929 18 C -0.694 4.694 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.162 0.838 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.256 0.744 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.235 13.380 -20.366 31.674 hybrid contribution -1.619 -0.984 2.142 2.860 sum -21.854 12.396 -18.224 31.038 Atomic orbital electron populations 1.21686 0.92967 1.03271 1.01974 1.20055 0.97180 0.87147 1.04276 1.23910 1.01062 0.99866 0.88693 1.73835 1.18503 0.93525 1.25284 1.84773 1.63145 1.26728 1.23912 1.24974 0.99458 1.00049 0.82974 1.20524 1.03420 0.90171 0.98775 1.20989 1.09451 0.93628 0.97506 1.20097 0.90298 1.00711 0.87110 1.60314 1.32105 1.36971 1.02836 1.21970 0.94390 1.00723 0.89431 1.21197 0.99105 0.99247 0.80499 1.45572 1.15455 1.63293 1.12147 1.20072 0.83312 0.76546 0.88200 1.90703 1.31453 1.54817 1.67627 1.23366 1.03724 1.05401 0.95485 1.85625 1.15443 1.79739 1.12045 1.23181 1.02619 1.47833 0.95759 0.89744 1.26147 0.94120 0.94412 1.04589 1.70185 1.05153 1.41056 1.38415 0.84999 0.78000 0.79025 0.75940 1.18622 1.20543 1.18590 0.91873 0.93667 0.90036 0.90456 0.88392 0.88659 0.88773 0.87352 0.92437 0.88022 0.83835 0.88531 0.92533 0.92893 0.92381 0.74436 0.86986 0.87026 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.90 71.98 0.71 -0.70 16 2 C -0.05 -0.60 6.44 29.85 0.19 -0.41 16 3 C 0.02 0.42 6.58 43.58 0.29 0.70 16 4 N -0.40 -8.95 12.07 -49.55 -0.60 -9.54 16 5 O 0.08 1.51 11.20 71.55 0.80 2.32 16 6 C -0.01 -0.15 7.49 25.04 0.19 0.04 16 7 C -0.07 -0.51 10.30 71.24 0.73 0.23 16 8 C -0.21 -2.99 5.83 -19.73 -0.12 -3.10 16 9 C 0.15 1.36 6.01 85.56 0.51 1.88 16 10 N -0.69 -8.12 6.49 -517.93 -3.36 -11.48 16 11 C 0.06 0.69 5.80 86.30 0.50 1.19 16 12 C 0.12 2.45 5.93 86.38 0.51 2.96 16 13 N -0.71 -15.93 5.56 -463.08 -2.57 -18.50 16 14 C 0.53 18.89 7.85 87.66 0.69 19.58 16 15 O -0.57 -26.08 15.86 -3.03 -0.05 -26.13 16 16 C -0.13 -4.89 6.16 71.23 0.44 -4.45 16 17 S -0.16 -8.56 20.57 -56.49 -1.16 -9.72 16 18 C -0.55 -30.78 9.50 67.96 0.65 -30.13 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.68 5.49 84.86 0.47 1.14 16 21 N -0.91 -55.82 13.22 21.65 0.29 -55.53 16 22 Si 1.00 43.02 29.55 68.60 2.03 45.04 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.11 0.40 7.43 -2.39 -0.02 0.38 16 34 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.10 0.66 7.44 -2.39 -0.02 0.64 16 36 H 0.34 4.40 8.72 -89.69 -0.78 3.62 16 37 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.42 6.05 8.47 -92.71 -0.79 5.27 16 42 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 43 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -81.00 391.30 0.59 -80.41 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -0.55 Total: 14.21 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 5.76 Total: -11.07 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -6.25 Total: -95.06 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.75 Total: -23.81 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -81.00 0.59 -80.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.127 kcal (2) G-P(sol) polarization free energy of solvation -81.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds