Wall clock time and date at job start Tue Mar 31 2020 16:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.46947 * 89.98297 * 8 7 5 10 10 C 1.46898 * 110.99819 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47243 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.47346 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00130 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99882 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00028 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.46883 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99772 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00150 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99953 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00033 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00045 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47424 * 90.00332 * 21 19 17 23 23 H 1.48494 * 109.47436 * 210.00401 * 21 19 17 24 24 H 1.48509 * 109.47107 * 330.00320 * 21 19 17 25 25 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 26 26 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 27 27 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 28 28 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 30 30 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 31 31 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 32 32 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 33 33 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 34 34 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 35 35 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 36 36 H 1.00900 * 110.99884 * 303.94768 * 9 8 7 37 37 H 1.08993 * 109.47440 * 299.99974 * 10 9 8 38 38 H 1.09006 * 109.47238 * 59.99841 * 10 9 8 39 39 H 1.08998 * 109.47271 * 300.00041 * 11 10 9 40 40 H 1.09006 * 109.46768 * 60.00001 * 11 10 9 41 41 H 0.96998 * 119.99697 * 359.97438 * 12 11 10 42 42 H 1.08998 * 109.47102 * 299.99924 * 15 13 12 43 43 H 1.08997 * 109.46977 * 59.99801 * 15 13 12 44 44 H 0.97001 * 119.99809 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5652 4.4331 -1.8405 10 6 4.9999 5.5448 -2.6967 11 6 6.4999 5.4208 -2.9713 12 7 6.9336 6.5297 -3.8247 13 6 8.2246 6.6268 -4.1994 14 8 9.0272 5.7958 -3.8304 15 6 8.6705 7.7673 -5.0778 16 16 10.4451 7.6206 -5.4024 17 6 10.6881 9.0379 -6.4206 18 1 9.8540 9.6817 -6.6580 19 6 11.9514 9.3271 -6.9176 20 7 12.9678 8.5422 -6.6287 21 14 12.2088 10.8292 -7.9977 22 1 12.5480 11.9983 -7.1471 23 1 13.3193 10.5705 -8.9490 24 1 10.9637 11.1132 -8.7557 25 8 2.2923 2.1565 -1.0890 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2428 5.1017 1.7910 32 1 3.5179 4.0837 2.5027 33 1 3.8744 5.0918 1.0795 34 1 2.5677 4.4799 -2.4896 35 1 2.9139 5.4590 -1.0439 36 1 5.1023 4.4033 -0.9868 37 1 4.4538 5.5124 -3.6394 38 1 4.8000 6.4908 -2.1934 39 1 7.0458 5.4535 -2.0284 40 1 6.7002 4.4747 -3.4744 41 1 6.2914 7.1937 -4.1206 42 1 8.1244 7.7348 -6.0205 43 1 8.4705 8.7132 -4.5745 44 1 13.8506 8.7440 -6.9764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:28 Heat of formation + Delta-G solvation = -27.946776 kcal Electronic energy + Delta-G solvation = -23662.565597 eV Core-core repulsion = 19935.422960 eV Total energy + Delta-G solvation = -3727.142637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.71722 -39.23560 -37.29117 -35.52709 -34.95532 -34.14482 -32.43461 -31.65252 -30.19579 -28.84878 -27.15079 -25.59382 -25.33415 -23.48166 -22.46589 -21.89880 -20.85850 -20.39207 -17.90838 -17.32145 -17.11176 -16.43747 -16.27363 -16.08048 -15.41366 -15.35665 -14.81526 -14.80580 -14.64110 -14.42910 -13.89312 -13.81980 -13.69347 -13.54470 -13.17757 -13.05806 -12.91368 -12.56507 -12.40116 -12.29462 -12.21821 -11.88036 -11.69337 -11.52837 -11.25095 -11.06884 -11.03109 -10.83616 -10.76897 -9.82566 -9.45912 -9.15781 -9.07774 -8.92867 -8.88332 -8.24351 -6.50791 -6.22206 -3.92958 1.00577 2.20047 2.27404 2.95381 3.08090 3.21848 3.25835 3.29966 3.50255 3.58491 4.01960 4.19783 4.23977 4.36808 4.45755 4.57763 4.60996 4.65338 4.79038 4.80785 4.91875 5.11613 5.12466 5.12974 5.15104 5.17149 5.25272 5.27941 5.38726 5.55795 5.58658 5.65661 5.69631 5.70430 5.84034 5.88451 5.96717 6.12203 6.31974 6.56192 6.76330 7.38466 7.58821 7.66199 8.34516 8.58820 9.23055 10.85229 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.038004 B = 0.001494 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.591949 B =18735.801139 C =18867.328196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C 0.197 3.803 4 N -0.481 5.481 5 C -0.005 4.005 6 C -0.073 4.073 7 C -0.045 4.045 8 C 0.146 3.854 9 N -0.683 5.683 10 C 0.050 3.950 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.515 6.515 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 O -0.190 6.190 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.349 0.651 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.829 -10.836 13.899 32.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C -0.010 4.010 4 N -0.211 5.211 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.098 4.098 8 C 0.018 3.982 9 N -0.316 5.316 10 C -0.079 4.079 11 C -0.002 4.002 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 O -0.077 6.077 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.167 0.833 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.438 -12.935 14.531 32.824 hybrid contribution -0.996 3.179 -1.304 3.577 sum -27.434 -9.756 13.227 31.980 Atomic orbital electron populations 1.21781 0.93044 1.03064 1.02907 1.20084 0.96851 0.84220 1.05359 1.26268 0.99429 0.96697 0.78651 1.70351 1.17016 1.03414 1.30344 1.21559 1.04105 0.94877 0.92084 1.20136 1.01442 0.93136 0.98287 1.22902 1.06033 0.86611 0.94295 1.20204 0.89632 0.90308 0.98101 1.60297 1.02809 1.46110 1.22350 1.22122 0.95900 0.91756 0.98131 1.21114 0.92572 0.91078 0.95439 1.45883 1.10269 1.29420 1.53885 1.20307 0.81201 0.86545 0.80126 1.90713 1.52241 1.41541 1.54420 1.23528 1.07151 0.98669 1.01021 1.85421 0.95758 1.36807 1.65367 1.22869 0.97534 1.12146 1.35911 0.90919 1.24991 0.94918 0.97391 0.96253 1.70019 1.00374 1.36787 1.43076 0.86166 0.78050 0.81555 0.79708 1.20274 1.20737 1.19705 1.84399 1.63580 1.22224 1.37472 0.91811 0.92147 0.90778 0.88718 0.87570 0.90629 0.90238 0.90995 0.88763 0.91345 0.83253 0.89861 0.94022 0.91687 0.90569 0.76871 0.89161 0.89212 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.15 0.37 -0.29 16 2 C -0.03 -0.15 6.56 -27.89 -0.18 -0.33 16 3 C 0.20 1.86 7.60 -12.94 -0.10 1.76 16 4 N -0.48 -5.23 11.29 -7.36 -0.08 -5.32 16 5 C -0.01 -0.05 7.11 -82.82 -0.59 -0.64 16 6 C -0.07 -0.47 10.05 36.01 0.36 -0.11 16 7 C -0.04 -0.42 6.90 -35.69 -0.25 -0.66 16 8 C 0.15 1.01 5.84 -4.97 -0.03 0.98 16 9 N -0.68 -5.41 6.49 -115.06 -0.75 -6.16 16 10 C 0.05 0.37 5.80 -3.82 -0.02 0.35 16 11 C 0.12 1.37 5.93 -4.04 -0.02 1.34 16 12 N -0.74 -9.40 5.56 -60.29 -0.33 -9.73 16 13 C 0.53 9.82 7.85 -10.98 -0.09 9.74 16 14 O -0.52 -11.77 15.86 5.56 0.09 -11.68 16 15 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 21 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 O -0.19 -1.99 10.78 5.36 0.06 -1.94 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.36 7.79 -51.93 -0.40 -0.04 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.34 7.80 -51.93 -0.40 -0.07 16 36 H 0.35 2.65 8.72 -39.29 -0.34 2.31 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.40 3.74 8.47 -40.82 -0.35 3.39 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -36.93 392.20 -8.70 -45.63 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.96 Total: -0.14 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.13 Total: -3.62 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.43 Total: -46.61 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.15 Total: -13.62 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.93 -8.70 -45.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.683 kcal (2) G-P(sol) polarization free energy of solvation -36.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds