Wall clock time and date at job start Tue Mar 31 2020 16:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46901 * 109.46947 * 89.98297 * 8 7 5 10 10 C 1.46898 * 110.99819 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47243 * 179.97438 * 10 9 8 12 12 N 1.46498 * 109.47346 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00130 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99882 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00028 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.46883 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99772 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00150 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99953 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00033 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00045 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47424 * 90.00332 * 21 19 17 23 23 H 1.48494 * 109.47436 * 210.00401 * 21 19 17 24 24 H 1.48509 * 109.47107 * 330.00320 * 21 19 17 25 25 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 26 26 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 27 27 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 28 28 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 30 30 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 31 31 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 32 32 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 33 33 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 34 34 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 35 35 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 36 36 H 1.00900 * 110.99884 * 303.94768 * 9 8 7 37 37 H 1.08993 * 109.47440 * 299.99974 * 10 9 8 38 38 H 1.09006 * 109.47238 * 59.99841 * 10 9 8 39 39 H 1.08998 * 109.47271 * 300.00041 * 11 10 9 40 40 H 1.09006 * 109.46768 * 60.00001 * 11 10 9 41 41 H 0.96998 * 119.99697 * 359.97438 * 12 11 10 42 42 H 1.08998 * 109.47102 * 299.99924 * 15 13 12 43 43 H 1.08997 * 109.46977 * 59.99801 * 15 13 12 44 44 H 0.97001 * 119.99809 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5652 4.4331 -1.8405 10 6 4.9999 5.5448 -2.6967 11 6 6.4999 5.4208 -2.9713 12 7 6.9336 6.5297 -3.8247 13 6 8.2246 6.6268 -4.1994 14 8 9.0272 5.7958 -3.8304 15 6 8.6705 7.7673 -5.0778 16 16 10.4451 7.6206 -5.4024 17 6 10.6881 9.0379 -6.4206 18 1 9.8540 9.6817 -6.6580 19 6 11.9514 9.3271 -6.9176 20 7 12.9678 8.5422 -6.6287 21 14 12.2088 10.8292 -7.9977 22 1 12.5480 11.9983 -7.1471 23 1 13.3193 10.5705 -8.9490 24 1 10.9637 11.1132 -8.7557 25 8 2.2923 2.1565 -1.0890 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2428 5.1017 1.7910 32 1 3.5179 4.0837 2.5027 33 1 3.8744 5.0918 1.0795 34 1 2.5677 4.4799 -2.4896 35 1 2.9139 5.4590 -1.0439 36 1 5.1023 4.4033 -0.9868 37 1 4.4538 5.5124 -3.6394 38 1 4.8000 6.4908 -2.1934 39 1 7.0458 5.4535 -2.0284 40 1 6.7002 4.4747 -3.4744 41 1 6.2914 7.1937 -4.1206 42 1 8.1244 7.7348 -6.0205 43 1 8.4705 8.7132 -4.5745 44 1 13.8506 8.7440 -6.9764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:27 Heat of formation + Delta-G solvation = -58.088816 kcal Electronic energy + Delta-G solvation = -23663.872654 eV Core-core repulsion = 19935.422960 eV Total energy + Delta-G solvation = -3728.449694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.39065 -40.62684 -38.02107 -36.22680 -35.82246 -34.90009 -34.57551 -32.41915 -31.29570 -29.77573 -28.00123 -27.57670 -26.04830 -24.04836 -23.23027 -22.54228 -21.79615 -21.47472 -19.84477 -18.08399 -17.93925 -17.61830 -17.21956 -17.09202 -16.87048 -16.44440 -15.96630 -15.94482 -15.63112 -15.13537 -14.96133 -14.71064 -14.64084 -14.32051 -14.20657 -14.15204 -13.63806 -13.52590 -13.38956 -13.15828 -12.99392 -12.88666 -12.75184 -12.62377 -12.57368 -12.45061 -12.08800 -11.91901 -11.72449 -11.53735 -11.13498 -11.00795 -10.26535 -10.14515 -9.74901 -9.48096 -8.66285 -8.33903 -6.12207 0.34196 1.27209 1.43395 1.47123 1.54506 1.58866 1.61115 1.66650 2.21209 2.28687 2.97588 3.00449 3.22595 3.37601 3.67323 3.78893 3.82221 4.01330 4.05828 4.12589 4.20465 4.22163 4.31262 4.32677 4.46594 4.49066 4.52492 4.66043 4.68965 4.76969 4.89251 4.91157 4.93152 4.95640 5.07438 5.09777 5.25642 5.38539 5.39073 5.42741 5.77476 6.17933 6.20592 6.50604 6.71088 7.07466 7.24912 8.75352 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.038004 B = 0.001494 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.591949 B =18735.801139 C =18867.328196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 C 0.190 3.810 4 N -0.513 5.513 5 C -0.021 4.021 6 C -0.071 4.071 7 C -0.057 4.057 8 C 0.152 3.848 9 N -0.698 5.698 10 C 0.064 3.936 11 C 0.123 3.877 12 N -0.710 5.710 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.128 4.128 16 S -0.156 6.156 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.257 1.257 25 O -0.207 6.207 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.349 0.651 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.419 0.581 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.196 -9.222 13.438 34.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.017 4.017 4 N -0.243 5.243 5 C -0.141 4.141 6 C -0.128 4.128 7 C -0.110 4.110 8 C 0.023 3.977 9 N -0.331 5.331 10 C -0.064 4.064 11 C -0.001 4.001 12 N -0.364 5.364 13 C 0.319 3.681 14 O -0.446 6.446 15 C -0.280 4.280 16 S 0.072 5.928 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.181 1.181 25 O -0.094 6.094 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.168 0.832 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.256 0.744 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.881 -11.299 14.080 34.060 hybrid contribution -0.383 2.587 -1.078 2.828 sum -29.264 -8.712 13.002 33.187 Atomic orbital electron populations 1.21750 0.92108 1.04246 1.02094 1.20323 0.97547 0.82349 1.06420 1.27063 0.98660 0.97730 0.78248 1.70362 1.18265 1.04445 1.31256 1.22060 1.03968 0.95204 0.92855 1.20229 1.02368 0.92530 0.97679 1.23369 1.06073 0.86812 0.94711 1.20297 0.88754 0.90303 0.98308 1.60233 1.03554 1.46653 1.22653 1.21980 0.92731 0.92755 0.98982 1.21180 0.95324 0.89345 0.94250 1.45554 1.08525 1.29888 1.52481 1.20091 0.82598 0.85565 0.79875 1.90703 1.54126 1.43234 1.56530 1.23365 1.01371 1.00468 1.02752 1.85627 1.03299 1.37883 1.66034 1.23216 0.98261 1.12103 1.35830 0.89761 1.26132 0.94472 1.00848 0.97682 1.70190 1.00993 1.39085 1.44575 0.84946 0.78423 0.76998 0.77561 1.19289 1.20409 1.18120 1.84399 1.63980 1.22946 1.38113 0.92868 0.92647 0.88569 0.87339 0.86746 0.89434 0.90797 0.89302 0.88254 0.88827 0.83204 0.88741 0.91511 0.92439 0.92681 0.74364 0.87031 0.86897 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.89 71.98 0.71 -0.42 16 2 C -0.03 -0.30 6.56 29.85 0.20 -0.10 16 3 C 0.19 3.58 7.60 88.34 0.67 4.25 16 4 N -0.51 -11.18 11.29 -291.98 -3.30 -14.48 16 5 C -0.02 -0.38 7.11 41.26 0.29 -0.09 16 6 C -0.07 -0.84 10.05 71.24 0.72 -0.12 16 7 C -0.06 -1.00 6.90 24.79 0.17 -0.83 16 8 C 0.15 1.74 5.84 85.56 0.50 2.24 16 9 N -0.70 -9.61 6.49 -517.93 -3.36 -12.97 16 10 C 0.06 0.76 5.80 86.30 0.50 1.26 16 11 C 0.12 2.55 5.93 86.38 0.51 3.07 16 12 N -0.71 -16.37 5.56 -463.05 -2.57 -18.94 16 13 C 0.53 19.19 7.85 87.66 0.69 19.88 16 14 O -0.57 -26.41 15.86 -3.02 -0.05 -26.46 16 15 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 16 S -0.16 -8.61 20.57 -56.49 -1.16 -9.77 16 17 C -0.55 -30.96 9.50 67.95 0.65 -30.32 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.76 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 21 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 25 O -0.21 -4.29 10.78 -3.73 -0.04 -4.33 16 26 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.09 0.71 7.79 -2.38 -0.02 0.69 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.09 0.60 7.80 -2.39 -0.02 0.59 16 36 H 0.35 4.75 8.72 -89.69 -0.78 3.96 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 40 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.42 6.26 8.47 -92.71 -0.79 5.48 16 42 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 43 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -83.61 392.20 -2.21 -85.82 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -0.55 Total: 16.05 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 6.51 Total: -4.46 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -8.95 Total: -102.12 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.09 Total: -30.79 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -83.61 -2.21 -85.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.728 kcal (2) G-P(sol) polarization free energy of solvation -83.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds