Wall clock time and date at job start Tue Mar 31 2020 16:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.34042 * 126.78045 * 270.02800 * 3 2 1 5 5 N 1.20923 * 111.56962 * 179.97438 * 4 3 2 6 6 C 1.30173 * 111.60616 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.80325 * 179.97438 * 6 5 4 8 8 C 1.35449 * 126.77663 * 89.98380 * 3 2 1 9 9 C 1.50700 * 128.00923 * 0.07017 * 8 3 2 10 10 N 1.46901 * 109.47536 * 269.98494 * 9 8 3 11 11 C 1.46897 * 111.00255 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47301 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47079 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99850 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00239 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47298 * 179.97438 * 16 14 13 18 18 C 1.76193 * 99.99839 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00027 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99932 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99986 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47034 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47009 * 120.00338 * 22 20 18 25 25 H 1.48503 * 109.47202 * 239.99962 * 22 20 18 26 26 H 1.08996 * 109.47047 * 59.99753 * 1 2 3 27 27 H 1.09001 * 109.46686 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46910 * 299.99628 * 1 2 3 29 29 H 1.08998 * 109.46910 * 240.00372 * 2 1 3 30 30 H 1.08996 * 109.47047 * 120.00247 * 2 1 3 31 31 H 1.08997 * 109.47199 * 90.02632 * 7 6 5 32 32 H 1.08997 * 109.47280 * 210.02484 * 7 6 5 33 33 H 1.09000 * 109.47129 * 330.02093 * 7 6 5 34 34 H 1.09004 * 109.46842 * 29.98196 * 9 8 3 35 35 H 1.08993 * 109.47368 * 149.97749 * 9 8 3 36 36 H 1.00899 * 110.99485 * 303.95313 * 10 9 8 37 37 H 1.09005 * 109.46448 * 299.99479 * 11 10 9 38 38 H 1.08996 * 109.47396 * 59.99444 * 11 10 9 39 39 H 1.09001 * 109.46989 * 299.99984 * 12 11 10 40 40 H 1.09004 * 109.47085 * 59.99771 * 12 11 10 41 41 H 0.96996 * 119.99858 * 359.97438 * 13 12 11 42 42 H 1.08997 * 109.46753 * 299.99981 * 16 14 13 43 43 H 1.09004 * 109.46910 * 59.99839 * 16 14 13 44 44 H 0.97000 * 120.00064 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2994 2.1776 -1.0736 5 7 2.6880 3.2779 -0.7563 6 6 2.7371 3.4143 0.5373 7 6 3.1707 4.6395 1.3000 8 6 2.3024 2.1854 1.0849 9 6 2.1715 1.8122 2.5391 10 7 0.8229 2.1516 3.0124 11 6 0.6583 1.8004 4.4293 12 6 -0.7550 2.1684 4.8851 13 7 -0.9193 1.8176 6.2979 14 6 -2.0925 2.0524 6.9185 15 8 -3.0119 2.5545 6.3074 16 6 -2.2618 1.6910 8.3717 17 16 -3.9338 2.1266 8.9110 18 6 -3.8562 1.6119 10.5943 19 1 -2.9476 1.1778 10.9849 20 6 -4.9623 1.7653 11.4186 21 7 -6.0694 2.2947 10.9426 22 14 -4.8802 1.2190 13.2031 23 1 -3.5343 0.6597 13.4881 24 1 -5.1295 2.3841 14.0894 25 1 -5.9113 0.1793 13.4504 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.3063 5.2772 1.4850 32 1 3.6104 4.3388 2.2510 33 1 3.9091 5.1887 0.7159 34 1 2.3388 0.7414 2.6558 35 1 2.9104 2.3610 3.1230 36 1 0.6196 3.1274 2.8554 37 1 0.8149 0.7295 4.5586 38 1 1.3867 2.3488 5.0266 39 1 -0.9112 3.2394 4.7557 40 1 -1.4837 1.6203 4.2878 41 1 -0.1841 1.4157 6.7865 42 1 -2.1056 0.6200 8.5003 43 1 -1.5333 2.2388 8.9696 44 1 -6.8425 2.4016 11.5186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:18 Heat of formation + Delta-G solvation = 8.280225 kcal Electronic energy + Delta-G solvation = -24158.629962 eV Core-core repulsion = 20433.058245 eV Total energy + Delta-G solvation = -3725.571717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.26484 -39.23299 -37.53064 -35.48523 -34.92491 -33.91781 -32.44214 -31.07071 -29.94713 -29.12378 -28.10444 -25.64702 -25.30954 -24.18201 -22.40721 -21.85261 -20.38954 -20.31973 -17.97969 -17.87741 -17.30961 -16.61920 -16.28372 -16.04321 -15.39360 -15.28208 -14.83091 -14.80238 -14.57395 -14.14358 -13.85923 -13.78550 -13.71264 -13.41199 -13.21617 -13.08329 -12.83888 -12.71947 -12.54149 -12.22381 -11.91244 -11.78367 -11.63871 -11.49884 -11.17823 -11.08193 -11.03272 -10.77174 -10.26685 -9.82148 -9.61365 -9.43153 -9.09230 -8.93854 -8.91589 -8.24441 -6.51373 -6.23032 -3.93618 1.10581 1.78557 2.72831 2.96642 3.08031 3.20493 3.25974 3.30443 3.58043 3.78945 4.01281 4.09399 4.18985 4.36673 4.47654 4.63163 4.71569 4.79525 4.82913 4.87759 4.98557 5.08575 5.12046 5.12238 5.14239 5.18490 5.28455 5.34039 5.45229 5.50633 5.59084 5.64588 5.72107 5.74627 5.85810 5.88384 5.95035 6.11782 6.42132 6.58282 6.84984 7.58528 7.66447 7.94384 8.34081 8.58903 9.22401 10.84445 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.001691 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.398001 B =16559.169607 C =16882.530867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.003 4.003 4 O 0.096 5.904 5 N -0.368 5.368 6 C 0.024 3.976 7 C -0.078 4.078 8 C -0.203 4.203 9 C 0.141 3.859 10 N -0.680 5.680 11 C 0.050 3.950 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.346 0.654 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.397 0.603 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.772 -3.380 -20.015 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 C -0.068 4.068 4 O 0.032 5.968 5 N -0.074 5.074 6 C -0.135 4.135 7 C -0.135 4.135 8 C -0.207 4.207 9 C 0.012 3.988 10 N -0.312 5.312 11 C -0.080 4.080 12 C -0.002 4.002 13 N -0.395 5.395 14 C 0.318 3.682 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.165 0.835 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.047 -2.255 -22.272 30.051 hybrid contribution 1.931 -0.654 3.170 3.769 sum 21.978 -2.909 -19.103 29.265 Atomic orbital electron populations 1.21799 0.92751 1.02821 1.03578 1.20133 0.97328 0.86103 1.04255 1.24370 0.99823 0.96922 0.85649 1.84813 1.61487 1.17523 1.32984 1.73863 1.17778 0.99702 1.16081 1.23464 1.02036 0.97791 0.90227 1.20182 1.02180 0.92334 0.98838 1.20740 1.09067 0.93908 0.97034 1.20043 0.89595 1.01339 0.87781 1.60339 1.26408 1.26764 1.17679 1.22109 0.96196 1.01778 0.87890 1.21119 0.96015 1.00907 0.82112 1.45893 1.15663 1.66429 1.11480 1.20299 0.81554 0.77550 0.88782 1.90712 1.39713 1.41674 1.66844 1.23528 1.07967 1.04679 0.94200 1.85420 1.05436 1.81587 1.10955 1.22908 1.02044 1.47665 0.95738 0.90864 1.25000 0.94534 0.94816 0.99294 1.70026 1.02519 1.41419 1.36280 0.86112 0.78258 0.78404 0.82683 1.19626 1.20577 1.20552 0.92432 0.91423 0.90571 0.89722 0.88650 0.89958 0.90226 0.90446 0.89557 0.93667 0.83542 0.90072 0.94373 0.91837 0.90648 0.76908 0.89180 0.89244 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.90 37.16 0.37 -0.53 16 2 C -0.04 -0.21 6.35 -27.88 -0.18 -0.39 16 3 C 0.00 -0.02 6.74 -35.31 -0.24 -0.26 16 4 O 0.10 0.96 11.20 17.17 0.19 1.15 16 5 N -0.37 -4.02 12.07 33.42 0.40 -3.62 16 6 C 0.02 0.22 7.33 -82.10 -0.60 -0.39 16 7 C -0.08 -0.47 10.39 36.00 0.37 -0.10 16 8 C -0.20 -1.57 5.83 -104.42 -0.61 -2.18 16 9 C 0.14 0.85 6.01 -4.98 -0.03 0.82 16 10 N -0.68 -4.67 6.49 -115.06 -0.75 -5.41 16 11 C 0.05 0.34 5.80 -3.83 -0.02 0.32 16 12 C 0.12 1.31 5.93 -4.05 -0.02 1.29 16 13 N -0.74 -9.17 5.56 -60.29 -0.33 -9.50 16 14 C 0.53 9.67 7.85 -10.98 -0.09 9.59 16 15 O -0.52 -11.61 15.86 5.56 0.09 -11.52 16 16 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 22 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.38 7.44 -51.93 -0.39 -0.01 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.36 7.66 -51.93 -0.40 -0.04 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.45 7.45 -51.93 -0.39 0.06 16 35 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 36 H 0.35 2.45 8.72 -39.29 -0.34 2.10 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.40 3.65 8.47 -40.82 -0.35 3.30 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 43 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -35.52 390.34 -8.52 -44.04 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.87 Total: -0.59 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.63 Total: -7.49 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.06 Total: -43.84 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.28 Total: -10.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.52 -8.52 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.318 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds