Wall clock time and date at job start Tue Mar 31 2020 16:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.34042 * 126.78045 * 270.02800 * 3 2 1 5 5 N 1.20923 * 111.56962 * 179.97438 * 4 3 2 6 6 C 1.30173 * 111.60616 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.80325 * 179.97438 * 6 5 4 8 8 C 1.35449 * 126.77663 * 89.98380 * 3 2 1 9 9 C 1.50700 * 128.00923 * 0.07017 * 8 3 2 10 10 N 1.46901 * 109.47536 * 269.98494 * 9 8 3 11 11 C 1.46897 * 111.00255 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47301 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47079 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99850 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00239 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47298 * 179.97438 * 16 14 13 18 18 C 1.76193 * 99.99839 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00027 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99932 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99986 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47034 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47009 * 120.00338 * 22 20 18 25 25 H 1.48503 * 109.47202 * 239.99962 * 22 20 18 26 26 H 1.08996 * 109.47047 * 59.99753 * 1 2 3 27 27 H 1.09001 * 109.46686 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46910 * 299.99628 * 1 2 3 29 29 H 1.08998 * 109.46910 * 240.00372 * 2 1 3 30 30 H 1.08996 * 109.47047 * 120.00247 * 2 1 3 31 31 H 1.08997 * 109.47199 * 90.02632 * 7 6 5 32 32 H 1.08997 * 109.47280 * 210.02484 * 7 6 5 33 33 H 1.09000 * 109.47129 * 330.02093 * 7 6 5 34 34 H 1.09004 * 109.46842 * 29.98196 * 9 8 3 35 35 H 1.08993 * 109.47368 * 149.97749 * 9 8 3 36 36 H 1.00899 * 110.99485 * 303.95313 * 10 9 8 37 37 H 1.09005 * 109.46448 * 299.99479 * 11 10 9 38 38 H 1.08996 * 109.47396 * 59.99444 * 11 10 9 39 39 H 1.09001 * 109.46989 * 299.99984 * 12 11 10 40 40 H 1.09004 * 109.47085 * 59.99771 * 12 11 10 41 41 H 0.96996 * 119.99858 * 359.97438 * 13 12 11 42 42 H 1.08997 * 109.46753 * 299.99981 * 16 14 13 43 43 H 1.09004 * 109.46910 * 59.99839 * 16 14 13 44 44 H 0.97000 * 120.00064 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2994 2.1776 -1.0736 5 7 2.6880 3.2779 -0.7563 6 6 2.7371 3.4143 0.5373 7 6 3.1707 4.6395 1.3000 8 6 2.3024 2.1854 1.0849 9 6 2.1715 1.8122 2.5391 10 7 0.8229 2.1516 3.0124 11 6 0.6583 1.8004 4.4293 12 6 -0.7550 2.1684 4.8851 13 7 -0.9193 1.8176 6.2979 14 6 -2.0925 2.0524 6.9185 15 8 -3.0119 2.5545 6.3074 16 6 -2.2618 1.6910 8.3717 17 16 -3.9338 2.1266 8.9110 18 6 -3.8562 1.6119 10.5943 19 1 -2.9476 1.1778 10.9849 20 6 -4.9623 1.7653 11.4186 21 7 -6.0694 2.2947 10.9426 22 14 -4.8802 1.2190 13.2031 23 1 -3.5343 0.6597 13.4881 24 1 -5.1295 2.3841 14.0894 25 1 -5.9113 0.1793 13.4504 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.3063 5.2772 1.4850 32 1 3.6104 4.3388 2.2510 33 1 3.9091 5.1887 0.7159 34 1 2.3388 0.7414 2.6558 35 1 2.9104 2.3610 3.1230 36 1 0.6196 3.1274 2.8554 37 1 0.8149 0.7295 4.5586 38 1 1.3867 2.3488 5.0266 39 1 -0.9112 3.2394 4.7557 40 1 -1.4837 1.6203 4.2878 41 1 -0.1841 1.4157 6.7865 42 1 -2.1056 0.6200 8.5003 43 1 -1.5333 2.2388 8.9696 44 1 -6.8425 2.4016 11.5186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:17 Heat of formation + Delta-G solvation = -17.872627 kcal Electronic energy + Delta-G solvation = -24159.764035 eV Core-core repulsion = 20433.058245 eV Total energy + Delta-G solvation = -3726.705789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.91274 -40.59634 -38.17382 -36.32757 -35.46689 -34.84259 -34.57141 -31.91279 -31.00553 -29.71224 -29.03568 -27.65309 -26.15468 -24.67311 -23.12605 -22.47856 -21.73834 -20.88242 -19.83123 -18.64031 -18.00008 -17.78189 -17.31581 -17.06500 -16.86916 -16.41565 -15.95460 -15.87935 -15.46256 -15.11867 -14.87753 -14.66687 -14.38430 -14.26263 -14.23316 -13.97652 -13.75876 -13.46089 -13.33759 -13.18811 -13.14653 -12.90873 -12.68121 -12.55084 -12.40496 -12.28459 -12.14128 -11.70018 -11.68878 -11.14981 -11.00001 -10.86806 -10.25261 -10.19924 -10.10825 -9.42176 -8.65510 -8.33753 -6.11653 0.49482 1.16609 1.29044 1.42490 1.48812 1.59471 1.63534 2.17409 2.25295 2.29668 3.00578 3.22215 3.30550 3.44095 3.50848 3.83948 3.89105 4.00863 4.10042 4.17226 4.27441 4.33808 4.36470 4.40879 4.53529 4.53733 4.55712 4.63990 4.67425 4.79811 4.84463 4.96393 4.99040 5.00791 5.06757 5.18687 5.25205 5.42908 5.43728 5.46595 5.94379 6.21234 6.30318 6.53362 7.07785 7.27556 7.31242 8.75683 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.001691 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.398001 B =16559.169607 C =16882.530867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.007 4.007 4 O 0.076 5.924 5 N -0.405 5.405 6 C 0.018 3.982 7 C -0.078 4.078 8 C -0.207 4.207 9 C 0.147 3.853 10 N -0.688 5.688 11 C 0.065 3.935 12 C 0.124 3.876 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.129 4.129 17 S -0.156 6.156 18 C -0.544 4.544 19 H 0.084 0.916 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.344 0.656 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.418 0.582 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.391 -4.920 -18.607 31.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 C -0.071 4.071 4 O 0.015 5.985 5 N -0.114 5.114 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.212 4.212 9 C 0.018 3.982 10 N -0.320 5.320 11 C -0.065 4.065 12 C 0.000 4.000 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.280 4.280 17 S 0.071 5.929 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.735 -3.834 -20.884 31.108 hybrid contribution 1.198 -0.178 2.615 2.882 sum 23.933 -4.013 -18.269 30.375 Atomic orbital electron populations 1.21751 0.93311 1.03267 1.02245 1.20273 0.96627 0.84777 1.05847 1.24936 0.99114 0.97785 0.85299 1.84766 1.62056 1.17684 1.33984 1.73854 1.19644 1.00487 1.17438 1.24002 1.01172 0.99024 0.89959 1.20297 1.02432 0.91461 0.99329 1.20997 1.08833 0.93361 0.97980 1.20093 0.89212 1.02342 0.86560 1.60306 1.27305 1.26774 1.17642 1.21960 0.93576 1.02852 0.88074 1.21196 0.98327 1.00053 0.80437 1.45575 1.14229 1.64470 1.12196 1.20069 0.82537 0.77348 0.88174 1.90703 1.41879 1.44384 1.67626 1.23367 1.02937 1.06165 0.95507 1.85625 1.12511 1.82588 1.12141 1.23243 1.02639 1.47524 0.95797 0.89754 1.26146 0.93962 0.94635 1.04580 1.70192 1.03489 1.42875 1.38292 0.84894 0.78996 0.77996 0.75983 1.17880 1.20044 1.20011 0.93526 0.90066 0.92106 0.88383 0.86773 0.89455 0.88279 0.90528 0.88170 0.92266 0.83792 0.88594 0.92563 0.92905 0.92395 0.74453 0.86999 0.87047 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.90 71.98 0.71 -0.88 16 2 C -0.04 -0.32 6.35 29.85 0.19 -0.13 16 3 C -0.01 -0.10 6.74 25.04 0.17 0.06 16 4 O 0.08 1.54 11.20 71.61 0.80 2.34 16 5 N -0.40 -8.98 12.07 -49.55 -0.60 -9.58 16 6 C 0.02 0.30 7.33 43.58 0.32 0.62 16 7 C -0.08 -0.85 10.39 71.23 0.74 -0.11 16 8 C -0.21 -2.90 5.83 -19.73 -0.12 -3.02 16 9 C 0.15 1.32 6.01 85.56 0.51 1.83 16 10 N -0.69 -7.78 6.49 -517.94 -3.36 -11.14 16 11 C 0.06 0.68 5.80 86.30 0.50 1.18 16 12 C 0.12 2.42 5.93 86.38 0.51 2.94 16 13 N -0.71 -15.83 5.56 -463.06 -2.57 -18.40 16 14 C 0.53 18.83 7.85 87.66 0.69 19.52 16 15 O -0.57 -26.00 15.86 -3.03 -0.05 -26.05 16 16 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 17 S -0.16 -8.56 20.57 -56.49 -1.16 -9.72 16 18 C -0.54 -30.66 9.50 67.95 0.65 -30.02 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.64 5.49 84.86 0.47 1.11 16 21 N -0.91 -55.79 13.22 21.65 0.29 -55.51 16 22 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.58 7.44 -2.39 -0.02 0.56 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.66 7.66 -2.39 -0.02 0.64 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.65 7.45 -2.39 -0.02 0.63 16 35 H 0.06 0.39 7.66 -2.39 -0.02 0.38 16 36 H 0.34 4.25 8.72 -89.69 -0.78 3.47 16 37 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.42 6.01 8.47 -92.71 -0.79 5.23 16 42 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 43 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -80.72 390.34 0.61 -80.12 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -0.55 Total: 14.17 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 5.78 Total: -11.35 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -6.25 Total: -94.62 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.75 Total: -23.70 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -80.72 0.61 -80.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.245 kcal (2) G-P(sol) polarization free energy of solvation -80.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds