Wall clock time and date at job start Tue Mar 31 2020 15:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32566 * 121.64751 * 2 1 4 4 S 1.77232 * 105.32085 * 180.19528 * 3 2 1 5 5 C 1.72205 * 94.84720 * 359.76441 * 4 3 2 6 6 O 1.21831 * 127.06044 * 180.02562 * 5 4 3 7 7 N 1.34251 * 105.88549 * 0.02562 * 5 4 3 8 8 C 1.46501 * 121.38082 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47090 * 90.02391 * 8 7 5 10 10 O 1.21279 * 120.00227 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99799 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99688 * 180.02562 * 11 9 8 13 13 H 1.08990 * 109.47427 * 35.00063 * 12 11 9 14 14 C 1.53002 * 109.47102 * 274.99602 * 12 11 9 15 15 C 1.53000 * 109.46901 * 155.00173 * 12 11 9 16 16 C 1.52997 * 109.47060 * 294.99627 * 15 12 11 17 17 H 1.09008 * 109.47017 * 55.00082 * 16 15 12 18 18 C 1.52994 * 109.47404 * 175.00005 * 16 15 12 19 19 N 1.46504 * 109.47349 * 295.00344 * 16 15 12 20 20 C 1.36935 * 120.00357 * 154.99635 * 19 16 15 21 21 H 1.08001 * 119.99995 * 0.02562 * 20 19 16 22 22 C 1.38812 * 120.00332 * 179.97438 * 20 19 16 23 23 N 1.31628 * 119.99614 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00299 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46946 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46966 * 120.00114 * 24 22 20 27 27 H 1.48497 * 109.47175 * 239.99854 * 24 22 20 28 28 H 1.08994 * 109.46898 * 270.24106 * 1 2 3 29 29 H 1.08999 * 109.46814 * 30.24034 * 1 2 3 30 30 H 1.09001 * 109.46750 * 150.23909 * 1 2 3 31 31 H 1.07998 * 127.34101 * 359.94665 * 3 2 1 32 32 H 1.08995 * 109.46951 * 330.02216 * 8 7 5 33 33 H 1.08996 * 109.46785 * 210.02154 * 8 7 5 34 34 H 0.96993 * 120.00319 * 0.02562 * 11 9 8 35 35 H 1.09004 * 109.46964 * 60.00330 * 14 12 11 36 36 H 1.08994 * 109.47359 * 180.02562 * 14 12 11 37 37 H 1.09000 * 109.47312 * 300.00532 * 14 12 11 38 38 H 1.09002 * 109.47398 * 54.99796 * 15 12 11 39 39 H 1.09001 * 109.47194 * 174.99977 * 15 12 11 40 40 H 1.09008 * 109.46970 * 60.00049 * 18 16 15 41 41 H 1.08996 * 109.47654 * 179.97438 * 18 16 15 42 42 H 1.09000 * 109.47476 * 300.00087 * 18 16 15 43 43 H 0.97006 * 119.99491 * 334.99935 * 19 16 15 44 44 H 0.96998 * 119.99521 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0058 5 6 3.5607 -1.0573 -0.0008 6 8 4.3674 -1.9703 -0.0017 7 7 2.2222 -1.1604 0.0043 8 6 1.5577 -2.4661 0.0091 9 6 1.3345 -2.9109 1.4315 10 8 1.6954 -2.2069 2.3508 11 7 0.7347 -4.0916 1.6820 12 6 0.5173 -4.5238 3.0649 13 1 0.2983 -3.6558 3.6867 14 6 1.7764 -5.2197 3.5857 15 6 -0.6616 -5.4978 3.1154 16 6 -1.9443 -4.7672 2.7132 17 1 -1.8065 -4.3017 1.7372 18 6 -3.1001 -5.7671 2.6428 19 7 -2.2509 -3.7356 3.7073 20 6 -2.9998 -2.6450 3.3537 21 1 -3.3647 -2.5455 2.3421 22 6 -3.2908 -1.6679 4.2957 23 7 -2.8464 -1.7894 5.5288 24 14 -4.3129 -0.1805 3.8136 25 1 -4.6877 -0.2811 2.3802 26 1 -5.5429 -0.1349 4.6444 27 1 -3.5211 1.0564 4.0332 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8921 -0.5101 31 1 1.8154 2.1367 -0.0008 32 1 2.1843 -3.1945 -0.5054 33 1 0.5981 -2.3871 -0.5017 34 1 0.4471 -4.6551 0.9469 35 1 2.6163 -4.5258 3.5498 36 1 1.6145 -5.5417 4.6144 37 1 1.9954 -6.0878 2.9639 38 1 -0.4815 -6.3223 2.4255 39 1 -0.7677 -5.8876 4.1277 40 1 -3.2378 -6.2326 3.6188 41 1 -4.0140 -5.2466 2.3567 42 1 -2.8720 -6.5346 1.9031 43 1 -1.9234 -3.8252 4.6160 44 1 -3.0501 -1.1068 6.1871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146275703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:46 Heat of formation + Delta-G solvation = -30.801675 kcal Electronic energy + Delta-G solvation = -26776.915925 eV Core-core repulsion = 23049.649490 eV Total energy + Delta-G solvation = -3727.266435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24469 -39.29323 -37.57854 -36.82645 -34.51559 -32.70024 -32.18502 -31.09124 -29.79511 -28.64113 -26.73398 -26.32465 -23.87937 -23.64106 -21.84163 -20.68845 -20.14206 -19.77106 -18.07874 -17.71338 -17.22322 -17.13537 -15.93785 -15.63084 -15.22372 -14.90728 -14.65955 -14.32072 -13.98962 -13.81747 -13.70621 -13.67891 -13.49522 -13.14989 -12.79455 -12.62507 -12.25477 -12.11405 -11.95291 -11.77630 -11.65072 -11.57172 -11.19030 -11.09264 -10.89600 -10.67366 -10.47783 -10.26166 -10.16908 -10.09251 -9.93950 -9.67324 -9.36257 -8.93455 -8.81271 -7.96159 -6.96841 -5.77770 -3.06053 0.91950 1.38513 1.74591 2.09922 2.63023 2.74111 3.36271 3.39265 3.42916 3.47556 4.40811 4.56275 4.60810 4.72817 4.84891 5.04978 5.10145 5.33293 5.37673 5.43690 5.46739 5.49934 5.57032 5.66433 5.75690 5.84905 5.91422 5.97540 6.08301 6.09709 6.24567 6.33638 6.38654 6.52457 6.64560 6.65308 6.73524 6.86368 7.02136 7.24198 7.64507 7.66124 8.37384 8.40385 9.51425 10.09488 10.43534 11.45003 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.004537 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.851617 B = 6170.135182 C = 7892.031282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.119 3.881 3 C -0.243 4.243 4 S -0.001 6.001 5 C 0.487 3.513 6 O -0.478 6.478 7 N -0.514 5.514 8 C 0.078 3.922 9 C 0.500 3.500 10 O -0.517 6.517 11 N -0.711 5.711 12 C 0.146 3.854 13 H 0.106 0.894 14 C -0.162 4.162 15 C -0.131 4.131 16 C 0.173 3.827 17 H 0.045 0.955 18 C -0.166 4.166 19 N -0.721 5.721 20 C -0.235 4.235 21 H 0.067 0.933 22 C -0.011 4.011 23 N -0.929 5.929 24 Si 0.900 3.100 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.192 0.808 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.395 0.605 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.034 0.966 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.823 -1.978 -14.277 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 C -0.380 4.380 4 S 0.242 5.758 5 C 0.170 3.830 6 O -0.358 6.358 7 N -0.234 5.234 8 C -0.051 4.051 9 C 0.283 3.717 10 O -0.391 6.391 11 N -0.363 5.363 12 C 0.042 3.958 13 H 0.124 0.876 14 C -0.220 4.220 15 C -0.170 4.170 16 C 0.063 3.937 17 H 0.063 0.937 18 C -0.226 4.226 19 N -0.363 5.363 20 C -0.367 4.367 21 H 0.085 0.915 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.732 3.268 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.219 1.219 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.209 0.791 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.688 -1.238 -13.679 16.808 hybrid contribution -1.969 -0.245 -0.102 1.987 sum 7.719 -1.484 -13.781 15.865 Atomic orbital electron populations 1.20870 0.86210 1.04070 1.05314 1.19459 0.95983 0.84633 0.99068 1.24801 0.92798 1.01276 1.19166 1.84959 1.08963 1.00824 1.81076 1.21534 0.83502 0.95811 0.82162 1.90940 1.48693 1.42557 1.53619 1.45556 1.06230 1.06715 1.64905 1.21751 1.01160 0.85138 0.97045 1.20499 0.78575 0.81901 0.90754 1.90780 1.49239 1.53488 1.45637 1.45879 1.60840 1.20246 1.09366 1.21051 0.93624 0.99052 0.82090 0.87617 1.22184 0.98446 1.00208 1.01155 1.22175 0.95015 0.97227 1.02542 1.20209 0.90554 0.89225 0.93754 0.93743 1.22461 1.01120 0.98982 1.00035 1.42416 1.63000 1.21366 1.09471 1.19167 1.24530 0.97665 0.95291 0.91492 1.24704 1.01330 0.98934 0.95771 1.69658 1.50067 1.35568 1.02464 0.86225 0.79823 0.83389 0.77382 1.20662 1.21954 1.21879 0.88410 0.89059 0.90669 0.79091 0.86155 0.85878 0.77152 0.92578 0.91652 0.93071 0.91992 0.90550 0.93522 0.92910 0.94713 0.78341 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.70 36.01 0.35 -0.75 16 2 C 0.12 1.45 6.59 -82.51 -0.54 0.90 16 3 C -0.24 -2.71 11.25 28.83 0.32 -2.39 16 4 S 0.00 -0.01 22.97 -107.50 -2.47 -2.48 16 5 C 0.49 7.57 8.27 53.82 0.45 8.02 16 6 O -0.48 -8.61 17.55 5.07 0.09 -8.52 16 7 N -0.51 -7.00 2.09 -118.57 -0.25 -7.25 16 8 C 0.08 0.91 5.75 -5.19 -0.03 0.88 16 9 C 0.50 7.77 7.86 -10.99 -0.09 7.68 16 10 O -0.52 -10.71 16.09 5.56 0.09 -10.62 16 11 N -0.71 -9.56 4.45 -53.80 -0.24 -9.80 16 12 C 0.15 2.27 2.52 -67.93 -0.17 2.09 16 13 H 0.11 2.19 7.06 -51.93 -0.37 1.83 16 14 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 15 C -0.13 -1.88 4.29 -26.73 -0.11 -1.99 16 16 C 0.17 3.04 2.84 -67.93 -0.19 2.85 16 17 H 0.04 0.78 7.56 -51.92 -0.39 0.38 16 18 C -0.17 -2.72 9.49 37.15 0.35 -2.37 16 19 N -0.72 -16.78 4.49 -53.43 -0.24 -17.02 16 20 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.29 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 24 Si 0.90 21.74 29.55 -169.99 -5.02 16.71 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.07 0.67 6.18 -51.93 -0.32 0.35 16 31 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 1.19 7.80 -51.93 -0.41 0.79 16 33 H 0.12 1.03 6.12 -51.93 -0.32 0.71 16 34 H 0.39 3.89 8.60 -40.82 -0.35 3.54 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.38 9.75 7.80 -40.82 -0.32 9.44 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -34.91 381.74 -7.79 -42.70 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.67 Total: 11.13 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 0.44 Total: 6.29 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.00 Total: -60.96 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.47 Total: -2.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.91 -7.79 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.902 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds