Wall clock time and date at job start Tue Mar 31 2020 15:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32566 * 121.64751 * 2 1 4 4 S 1.77232 * 105.32085 * 180.19528 * 3 2 1 5 5 C 1.72205 * 94.84720 * 359.76441 * 4 3 2 6 6 O 1.21831 * 127.06044 * 180.02562 * 5 4 3 7 7 N 1.34251 * 105.88549 * 0.02562 * 5 4 3 8 8 C 1.46501 * 121.38082 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47090 * 90.02391 * 8 7 5 10 10 O 1.21279 * 120.00227 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99799 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99688 * 180.02562 * 11 9 8 13 13 H 1.08990 * 109.47427 * 35.00063 * 12 11 9 14 14 C 1.53002 * 109.47102 * 274.99602 * 12 11 9 15 15 C 1.53000 * 109.46901 * 155.00173 * 12 11 9 16 16 C 1.52997 * 109.47060 * 294.99627 * 15 12 11 17 17 H 1.09008 * 109.47017 * 55.00082 * 16 15 12 18 18 C 1.52994 * 109.47404 * 175.00005 * 16 15 12 19 19 N 1.46504 * 109.47349 * 295.00344 * 16 15 12 20 20 C 1.36935 * 120.00357 * 154.99635 * 19 16 15 21 21 H 1.08001 * 119.99995 * 0.02562 * 20 19 16 22 22 C 1.38812 * 120.00332 * 179.97438 * 20 19 16 23 23 N 1.31628 * 119.99614 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00299 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46946 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46966 * 120.00114 * 24 22 20 27 27 H 1.48497 * 109.47175 * 239.99854 * 24 22 20 28 28 H 1.08994 * 109.46898 * 270.24106 * 1 2 3 29 29 H 1.08999 * 109.46814 * 30.24034 * 1 2 3 30 30 H 1.09001 * 109.46750 * 150.23909 * 1 2 3 31 31 H 1.07998 * 127.34101 * 359.94665 * 3 2 1 32 32 H 1.08995 * 109.46951 * 330.02216 * 8 7 5 33 33 H 1.08996 * 109.46785 * 210.02154 * 8 7 5 34 34 H 0.96993 * 120.00319 * 0.02562 * 11 9 8 35 35 H 1.09004 * 109.46964 * 60.00330 * 14 12 11 36 36 H 1.08994 * 109.47359 * 180.02562 * 14 12 11 37 37 H 1.09000 * 109.47312 * 300.00532 * 14 12 11 38 38 H 1.09002 * 109.47398 * 54.99796 * 15 12 11 39 39 H 1.09001 * 109.47194 * 174.99977 * 15 12 11 40 40 H 1.09008 * 109.46970 * 60.00049 * 18 16 15 41 41 H 1.08996 * 109.47654 * 179.97438 * 18 16 15 42 42 H 1.09000 * 109.47476 * 300.00087 * 18 16 15 43 43 H 0.97006 * 119.99491 * 334.99935 * 19 16 15 44 44 H 0.96998 * 119.99521 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0058 5 6 3.5607 -1.0573 -0.0008 6 8 4.3674 -1.9703 -0.0017 7 7 2.2222 -1.1604 0.0043 8 6 1.5577 -2.4661 0.0091 9 6 1.3345 -2.9109 1.4315 10 8 1.6954 -2.2069 2.3508 11 7 0.7347 -4.0916 1.6820 12 6 0.5173 -4.5238 3.0649 13 1 0.2983 -3.6558 3.6867 14 6 1.7764 -5.2197 3.5857 15 6 -0.6616 -5.4978 3.1154 16 6 -1.9443 -4.7672 2.7132 17 1 -1.8065 -4.3017 1.7372 18 6 -3.1001 -5.7671 2.6428 19 7 -2.2509 -3.7356 3.7073 20 6 -2.9998 -2.6450 3.3537 21 1 -3.3647 -2.5455 2.3421 22 6 -3.2908 -1.6679 4.2957 23 7 -2.8464 -1.7894 5.5288 24 14 -4.3129 -0.1805 3.8136 25 1 -4.6877 -0.2811 2.3802 26 1 -5.5429 -0.1349 4.6444 27 1 -3.5211 1.0564 4.0332 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8921 -0.5101 31 1 1.8154 2.1367 -0.0008 32 1 2.1843 -3.1945 -0.5054 33 1 0.5981 -2.3871 -0.5017 34 1 0.4471 -4.6551 0.9469 35 1 2.6163 -4.5258 3.5498 36 1 1.6145 -5.5417 4.6144 37 1 1.9954 -6.0878 2.9639 38 1 -0.4815 -6.3223 2.4255 39 1 -0.7677 -5.8876 4.1277 40 1 -3.2378 -6.2326 3.6188 41 1 -4.0140 -5.2466 2.3567 42 1 -2.8720 -6.5346 1.9031 43 1 -1.9234 -3.8252 4.6160 44 1 -3.0501 -1.1068 6.1871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146275703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:45 Heat of formation + Delta-G solvation = -55.566428 kcal Electronic energy + Delta-G solvation = -26777.989805 eV Core-core repulsion = 23049.649490 eV Total energy + Delta-G solvation = -3728.340315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.30307 -40.52975 -38.72105 -38.23598 -36.05986 -34.06356 -33.59574 -32.32822 -30.85790 -30.35025 -27.73572 -27.51912 -25.63596 -24.91726 -22.99355 -21.93038 -21.26403 -21.17620 -19.29568 -19.08381 -18.66700 -18.29754 -17.18733 -16.80132 -16.66868 -16.14850 -16.02724 -15.62046 -15.41899 -15.28936 -14.92791 -14.64603 -14.53277 -14.43532 -14.29197 -13.67983 -13.53315 -13.37114 -13.21687 -12.94438 -12.94098 -12.80410 -12.64896 -12.60335 -12.23319 -12.15501 -12.09733 -11.83213 -11.53664 -11.40841 -11.32564 -11.25434 -10.89337 -10.48102 -10.05374 -8.98734 -8.91761 -7.87798 -5.13540 -0.14608 0.36533 0.78018 1.03902 1.46671 1.47722 1.55542 1.57030 1.64614 2.25706 2.60145 3.47746 3.48583 3.67709 3.75824 3.84451 3.99727 4.04117 4.13034 4.22760 4.38716 4.52217 4.54384 4.62257 4.66770 4.68473 4.78236 4.81603 4.88112 4.95804 5.03705 5.11603 5.20456 5.22413 5.33234 5.42235 5.54735 5.62363 5.65972 5.66935 6.14879 6.34437 6.54950 7.26178 7.40285 8.20436 8.40158 9.36547 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.004537 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.851617 B = 6170.135182 C = 7892.031282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.098 3.902 3 C -0.230 4.230 4 S 0.005 5.995 5 C 0.468 3.532 6 O -0.518 6.518 7 N -0.515 5.515 8 C 0.080 3.920 9 C 0.492 3.508 10 O -0.579 6.579 11 N -0.697 5.697 12 C 0.150 3.850 13 H 0.047 0.953 14 C -0.153 4.153 15 C -0.117 4.117 16 C 0.165 3.835 17 H 0.052 0.948 18 C -0.157 4.157 19 N -0.733 5.733 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.959 3.041 25 H -0.257 1.257 26 H -0.301 1.301 27 H -0.301 1.301 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.225 0.775 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.417 0.583 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.077 0.923 43 H 0.367 0.633 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -2.937 -17.314 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.012 4.012 3 C -0.366 4.366 4 S 0.248 5.752 5 C 0.151 3.849 6 O -0.402 6.402 7 N -0.235 5.235 8 C -0.048 4.048 9 C 0.278 3.722 10 O -0.458 6.458 11 N -0.350 5.350 12 C 0.045 3.955 13 H 0.065 0.935 14 C -0.211 4.211 15 C -0.156 4.156 16 C 0.057 3.943 17 H 0.070 0.930 18 C -0.217 4.217 19 N -0.373 5.373 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.272 4.272 23 N -0.625 5.625 24 Si 0.790 3.210 25 H -0.180 1.180 26 H -0.229 1.229 27 H -0.229 1.229 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.110 0.890 31 H 0.241 0.759 32 H 0.158 0.842 33 H 0.179 0.821 34 H 0.254 0.746 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.199 0.801 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.694 -2.250 -16.814 19.062 hybrid contribution -1.654 0.013 0.800 1.837 sum 7.040 -2.237 -16.014 17.635 Atomic orbital electron populations 1.20900 0.84777 1.06520 1.03741 1.19872 0.96939 0.84445 0.99894 1.25356 0.91305 1.02568 1.17421 1.84905 1.10628 0.99307 1.80360 1.21899 0.84061 0.96444 0.82464 1.90900 1.49746 1.43932 1.55606 1.45661 1.05872 1.07881 1.64071 1.21968 1.03350 0.84937 0.94532 1.21236 0.77492 0.81660 0.91839 1.90758 1.51823 1.55342 1.47837 1.45733 1.59865 1.20049 1.09314 1.20787 0.95001 0.97249 0.82413 0.93469 1.22090 0.96489 1.00411 1.02102 1.22076 0.92417 0.97537 1.03546 1.20520 0.92577 0.88588 0.92579 0.92981 1.22318 0.99273 0.99238 1.00864 1.42668 1.62530 1.22186 1.09934 1.19579 1.22531 0.97760 0.95239 0.90473 1.25456 1.03714 1.02092 0.95978 1.69830 1.52653 1.36399 1.03626 0.85260 0.77738 0.79880 0.78157 1.18045 1.22868 1.22864 0.91753 0.85987 0.89021 0.75851 0.84151 0.82063 0.74561 0.95280 0.91305 0.89884 0.87380 0.90984 0.94382 0.94939 0.90466 0.80146 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 9.70 71.24 0.69 -1.18 16 2 C 0.10 2.23 6.59 40.71 0.27 2.50 16 3 C -0.23 -4.69 11.25 66.67 0.75 -3.94 16 4 S 0.00 0.13 22.97 -56.49 -1.30 -1.17 16 5 C 0.47 14.56 8.27 129.87 1.07 15.63 16 6 O -0.52 -19.06 17.55 -4.77 -0.08 -19.14 16 7 N -0.52 -13.56 2.09 -647.49 -1.35 -14.92 16 8 C 0.08 1.73 5.75 85.63 0.49 2.22 16 9 C 0.49 15.12 7.86 87.66 0.69 15.81 16 10 O -0.58 -24.95 16.09 -3.03 -0.05 -25.00 16 11 N -0.70 -17.58 4.45 -442.53 -1.97 -19.55 16 12 C 0.15 4.59 2.52 44.99 0.11 4.70 16 13 H 0.05 2.05 7.06 -2.39 -0.02 2.03 16 14 C -0.15 -4.16 9.48 71.98 0.68 -3.47 16 15 C -0.12 -3.07 4.29 30.59 0.13 -2.94 16 16 C 0.17 5.47 2.84 44.99 0.13 5.59 16 17 H 0.05 1.66 7.56 -2.38 -0.02 1.64 16 18 C -0.16 -4.69 9.49 71.98 0.68 -4.01 16 19 N -0.73 -34.25 4.49 -322.94 -1.45 -35.70 16 20 C -0.22 -11.45 9.93 84.03 0.83 -10.61 16 21 H 0.08 3.81 7.83 -2.91 -0.02 3.78 16 22 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 23 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 24 Si 0.96 45.15 29.55 68.60 2.03 47.18 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 26 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.12 1.48 8.10 -2.39 -0.02 1.46 16 30 H 0.09 1.34 6.18 -2.39 -0.01 1.33 16 31 H 0.22 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.14 2.47 7.80 -2.39 -0.02 2.45 16 33 H 0.16 2.13 6.12 -2.39 -0.01 2.12 16 34 H 0.42 6.71 8.60 -92.71 -0.80 5.91 16 35 H 0.03 0.93 8.14 -2.38 -0.02 0.92 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.37 19.31 7.80 -92.70 -0.72 18.58 16 44 H 0.24 14.86 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -81.98 381.74 2.62 -79.36 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -0.49 Total: 32.45 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 7.00 Total: 16.21 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -4.49 Total: -129.89 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.13 Total: -44.14 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.30 Total: -1.17 kcal Total: -81.98 2.62 -79.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.794 kcal (2) G-P(sol) polarization free energy of solvation -81.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds