Wall clock time and date at job start Tue Mar 31 2020 15:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32568 * 121.64763 * 2 1 4 4 S 1.77230 * 105.32071 * 180.19205 * 3 2 1 5 5 C 1.72209 * 94.84774 * 359.76817 * 4 3 2 6 6 O 1.21823 * 127.05926 * 180.02562 * 5 4 3 7 7 N 1.34245 * 105.88243 * 359.97438 * 5 4 3 8 8 C 1.46504 * 121.37802 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.47063 * 90.02273 * 8 7 5 10 10 O 1.21272 * 120.00150 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99511 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99550 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47509 * 324.99724 * 12 11 9 14 14 C 1.52999 * 109.47410 * 85.00095 * 12 11 9 15 15 C 1.52998 * 109.47164 * 205.00192 * 12 11 9 16 16 C 1.52998 * 109.47384 * 64.99625 * 15 12 11 17 17 H 1.09003 * 109.47082 * 305.00221 * 16 15 12 18 18 C 1.52995 * 109.47443 * 185.00170 * 16 15 12 19 19 N 1.46498 * 109.47009 * 65.00045 * 16 15 12 20 20 C 1.36935 * 120.00239 * 204.99963 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.08995 * 109.47311 * 270.23965 * 1 2 3 29 29 H 1.09000 * 109.47179 * 30.24042 * 1 2 3 30 30 H 1.08999 * 109.47357 * 150.24094 * 1 2 3 31 31 H 1.07998 * 127.33607 * 359.94085 * 3 2 1 32 32 H 1.09002 * 109.47099 * 330.02329 * 8 7 5 33 33 H 1.08994 * 109.46977 * 210.02221 * 8 7 5 34 34 H 0.96994 * 120.00258 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47191 * 299.99550 * 14 12 11 36 36 H 1.08996 * 109.47126 * 60.00048 * 14 12 11 37 37 H 1.09004 * 109.47346 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.46877 * 305.00014 * 15 12 11 39 39 H 1.08999 * 109.47306 * 185.00166 * 15 12 11 40 40 H 1.09003 * 109.46933 * 60.00266 * 18 16 15 41 41 H 1.09004 * 109.47411 * 179.97438 * 18 16 15 42 42 H 1.08996 * 109.47329 * 300.00343 * 18 16 15 43 43 H 0.97004 * 119.99747 * 25.00702 * 19 16 15 44 44 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6303 -0.0057 5 6 3.5607 -1.0573 -0.0008 6 8 4.3673 -1.9703 -0.0016 7 7 2.2222 -1.1604 0.0054 8 6 1.5577 -2.4660 0.0104 9 6 1.3356 -2.9112 1.4330 10 8 1.6965 -2.2071 2.3521 11 7 0.7351 -4.0915 1.6837 12 6 0.5188 -4.5240 3.0666 13 1 1.3517 -4.1911 3.6860 14 6 -0.7830 -3.9167 3.5933 15 6 0.4256 -6.0504 3.1149 16 6 1.7697 -6.6566 2.7068 17 1 2.0613 -6.2697 1.7303 18 6 1.6415 -8.1795 2.6342 19 7 2.7878 -6.2989 3.6976 20 6 4.1089 -6.2618 3.3393 21 1 4.4003 -6.4958 2.3260 22 6 5.0736 -5.9234 4.2783 23 7 4.7179 -5.6330 5.5118 24 14 6.8757 -5.8721 3.7892 25 1 7.6963 -5.4801 4.9632 26 1 7.2985 -7.2147 3.3158 27 1 7.0649 -4.8809 2.6998 28 1 -0.3634 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3634 -0.8921 -0.5101 31 1 1.8152 2.1367 -0.0009 32 1 2.1839 -3.1945 -0.5047 33 1 0.5976 -2.3870 -0.4996 34 1 0.4462 -4.6545 0.9487 35 1 -0.7166 -2.8292 3.5589 36 1 -1.6159 -4.2496 2.9740 37 1 -0.9442 -4.2388 4.6220 38 1 -0.3494 -6.3890 2.4274 39 1 0.1766 -6.3673 4.1277 40 1 0.8840 -8.4456 1.8969 41 1 2.5990 -8.6113 2.3430 42 1 1.3499 -8.5664 3.6106 43 1 2.5260 -6.0885 4.6077 44 1 3.7821 -5.6592 5.7657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146275704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:51 Heat of formation + Delta-G solvation = -27.439358 kcal Electronic energy + Delta-G solvation = -26752.679260 eV Core-core repulsion = 23025.558626 eV Total energy + Delta-G solvation = -3727.120634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24890 -39.33968 -37.54452 -36.90840 -34.65351 -32.77258 -32.29988 -31.14905 -29.89970 -28.29075 -26.82639 -26.39978 -23.88649 -23.36958 -21.90689 -20.74225 -20.16176 -19.90421 -18.14650 -17.72930 -17.24632 -17.20992 -15.87915 -15.59795 -15.41770 -14.90579 -14.70489 -14.33344 -14.10231 -13.89397 -13.82438 -13.67105 -13.49180 -13.24163 -13.17171 -12.80347 -12.33157 -12.16438 -12.04189 -11.73573 -11.72005 -11.66050 -11.19902 -11.04383 -10.69645 -10.49117 -10.44981 -10.17182 -10.11187 -10.03384 -9.86602 -9.38623 -9.06803 -8.87916 -8.81360 -7.95683 -6.93943 -5.98852 -2.98554 0.94902 1.36342 1.75163 2.13186 2.62514 2.69632 3.31782 3.60421 3.68856 3.82299 4.27830 4.48987 4.66640 4.78061 4.80793 4.90150 5.01060 5.16679 5.25262 5.27831 5.34566 5.37377 5.44150 5.54233 5.68685 5.77500 5.82046 5.89478 5.97812 6.01934 6.18588 6.22415 6.34424 6.44494 6.55824 6.62216 6.68036 6.82854 7.00159 7.33429 7.59031 7.90636 8.32329 8.86638 9.32410 10.18632 10.32210 11.49520 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.004653 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.480343 B = 6016.086551 C = 7851.639158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.111 3.889 3 C -0.243 4.243 4 S 0.001 5.999 5 C 0.486 3.514 6 O -0.456 6.456 7 N -0.517 5.517 8 C 0.080 3.920 9 C 0.499 3.501 10 O -0.517 6.517 11 N -0.712 5.712 12 C 0.145 3.855 13 H 0.101 0.899 14 C -0.159 4.159 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.046 0.954 18 C -0.165 4.165 19 N -0.731 5.731 20 C -0.326 4.326 21 H 0.061 0.939 22 C -0.041 4.041 23 N -0.943 5.943 24 Si 1.073 2.927 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.293 1.293 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.190 0.810 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.395 0.605 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.365 0.635 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.399 10.347 -14.774 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.000 4.000 3 C -0.381 4.381 4 S 0.244 5.756 5 C 0.168 3.832 6 O -0.333 6.333 7 N -0.238 5.238 8 C -0.050 4.050 9 C 0.283 3.717 10 O -0.391 6.391 11 N -0.364 5.364 12 C 0.041 3.959 13 H 0.119 0.881 14 C -0.218 4.218 15 C -0.170 4.170 16 C 0.067 3.933 17 H 0.064 0.936 18 C -0.225 4.225 19 N -0.374 5.374 20 C -0.457 4.457 21 H 0.079 0.921 22 C -0.239 4.239 23 N -0.589 5.589 24 Si 0.904 3.096 25 H -0.210 1.210 26 H -0.224 1.224 27 H -0.221 1.221 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.207 0.793 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.229 0.771 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.198 0.802 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.764 11.192 -13.759 21.851 hybrid contribution -2.944 -1.434 -0.594 3.328 sum -15.708 9.758 -14.353 23.408 Atomic orbital electron populations 1.20776 0.86935 1.03997 1.04161 1.19314 0.95591 0.84892 1.00223 1.24787 0.93443 1.01065 1.18806 1.85107 1.08244 1.01092 1.81170 1.21564 0.83545 0.95827 0.82279 1.91047 1.48312 1.42189 1.51797 1.45589 1.06324 1.06445 1.65421 1.21726 1.00921 0.85485 0.96842 1.20544 0.78038 0.82285 0.90863 1.90774 1.48785 1.53878 1.45700 1.45862 1.61010 1.20244 1.09250 1.21024 0.98446 0.94146 0.82263 0.88062 1.22171 0.97155 1.01273 1.01174 1.22191 0.98897 0.93527 1.02435 1.20151 0.87460 0.91943 0.93767 0.93591 1.22442 1.00419 0.99728 0.99897 1.42392 1.02995 1.83376 1.08641 1.19932 0.84108 1.44424 0.97196 0.92129 1.25649 1.04457 0.99669 0.94130 1.70890 1.18172 1.51864 1.17965 0.83349 0.75343 0.75807 0.75141 1.21024 1.22372 1.22079 0.89488 0.89125 0.90852 0.79258 0.85869 0.86253 0.77117 0.92575 0.92977 0.91697 0.91835 0.90708 0.94626 0.92802 0.93669 0.80172 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 9.69 36.00 0.35 -0.28 16 2 C 0.11 1.16 6.59 -82.51 -0.54 0.62 16 3 C -0.24 -2.43 11.25 28.83 0.32 -2.10 16 4 S 0.00 0.01 22.97 -107.50 -2.47 -2.46 16 5 C 0.49 8.36 8.27 53.82 0.45 8.81 16 6 O -0.46 -9.79 17.55 5.08 0.09 -9.71 16 7 N -0.52 -7.05 2.09 -118.56 -0.25 -7.30 16 8 C 0.08 0.93 5.75 -5.19 -0.03 0.90 16 9 C 0.50 7.82 7.86 -10.98 -0.09 7.74 16 10 O -0.52 -10.77 16.09 5.56 0.09 -10.68 16 11 N -0.71 -9.66 4.45 -53.81 -0.24 -9.90 16 12 C 0.15 2.26 2.52 -67.93 -0.17 2.09 16 13 H 0.10 2.16 7.06 -51.93 -0.37 1.80 16 14 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 15 C -0.13 -1.95 4.29 -26.73 -0.11 -2.07 16 16 C 0.18 3.40 2.84 -67.93 -0.19 3.21 16 17 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 18 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 19 N -0.73 -18.38 4.49 -53.43 -0.24 -18.62 16 20 C -0.33 -9.53 9.93 -15.06 -0.15 -9.68 16 21 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 22 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 23 N -0.94 -30.57 13.70 55.49 0.76 -29.81 16 24 Si 1.07 28.23 29.92 -169.99 -5.09 23.15 16 25 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 26 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.34 8.10 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 6.18 -51.93 -0.32 0.04 16 31 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.45 7.80 -51.93 -0.41 1.05 16 33 H 0.12 0.79 6.11 -51.93 -0.32 0.47 16 34 H 0.40 3.96 8.60 -40.82 -0.35 3.61 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.36 9.57 6.63 -40.82 -0.27 9.30 16 44 H 0.25 8.04 6.77 -40.82 -0.28 7.76 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -39.84 380.03 -7.73 -47.57 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.56 Total: 8.40 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 0.44 Total: 3.63 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 0.03 Total: -65.63 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.18 Total: -20.39 kcal Atomic # 14 Polarization: 28.23 SS G_CDS: -5.09 Total: 23.15 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.47 Total: -2.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.84 -7.73 -47.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.133 kcal (2) G-P(sol) polarization free energy of solvation -39.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds