Wall clock time and date at job start Tue Mar 31 2020 15:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32568 * 121.64763 * 2 1 4 4 S 1.77230 * 105.32071 * 180.19205 * 3 2 1 5 5 C 1.72209 * 94.84774 * 359.76817 * 4 3 2 6 6 O 1.21823 * 127.05926 * 180.02562 * 5 4 3 7 7 N 1.34245 * 105.88243 * 359.97438 * 5 4 3 8 8 C 1.46504 * 121.37802 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.47063 * 90.02273 * 8 7 5 10 10 O 1.21272 * 120.00150 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99511 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99550 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47509 * 324.99724 * 12 11 9 14 14 C 1.52999 * 109.47410 * 85.00095 * 12 11 9 15 15 C 1.52998 * 109.47164 * 205.00192 * 12 11 9 16 16 C 1.52998 * 109.47384 * 64.99625 * 15 12 11 17 17 H 1.09003 * 109.47082 * 305.00221 * 16 15 12 18 18 C 1.52995 * 109.47443 * 185.00170 * 16 15 12 19 19 N 1.46498 * 109.47009 * 65.00045 * 16 15 12 20 20 C 1.36935 * 120.00239 * 204.99963 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.08995 * 109.47311 * 270.23965 * 1 2 3 29 29 H 1.09000 * 109.47179 * 30.24042 * 1 2 3 30 30 H 1.08999 * 109.47357 * 150.24094 * 1 2 3 31 31 H 1.07998 * 127.33607 * 359.94085 * 3 2 1 32 32 H 1.09002 * 109.47099 * 330.02329 * 8 7 5 33 33 H 1.08994 * 109.46977 * 210.02221 * 8 7 5 34 34 H 0.96994 * 120.00258 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47191 * 299.99550 * 14 12 11 36 36 H 1.08996 * 109.47126 * 60.00048 * 14 12 11 37 37 H 1.09004 * 109.47346 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.46877 * 305.00014 * 15 12 11 39 39 H 1.08999 * 109.47306 * 185.00166 * 15 12 11 40 40 H 1.09003 * 109.46933 * 60.00266 * 18 16 15 41 41 H 1.09004 * 109.47411 * 179.97438 * 18 16 15 42 42 H 1.08996 * 109.47329 * 300.00343 * 18 16 15 43 43 H 0.97004 * 119.99747 * 25.00702 * 19 16 15 44 44 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6303 -0.0057 5 6 3.5607 -1.0573 -0.0008 6 8 4.3673 -1.9703 -0.0016 7 7 2.2222 -1.1604 0.0054 8 6 1.5577 -2.4660 0.0104 9 6 1.3356 -2.9112 1.4330 10 8 1.6965 -2.2071 2.3521 11 7 0.7351 -4.0915 1.6837 12 6 0.5188 -4.5240 3.0666 13 1 1.3517 -4.1911 3.6860 14 6 -0.7830 -3.9167 3.5933 15 6 0.4256 -6.0504 3.1149 16 6 1.7697 -6.6566 2.7068 17 1 2.0613 -6.2697 1.7303 18 6 1.6415 -8.1795 2.6342 19 7 2.7878 -6.2989 3.6976 20 6 4.1089 -6.2618 3.3393 21 1 4.4003 -6.4958 2.3260 22 6 5.0736 -5.9234 4.2783 23 7 4.7179 -5.6330 5.5118 24 14 6.8757 -5.8721 3.7892 25 1 7.6963 -5.4801 4.9632 26 1 7.2985 -7.2147 3.3158 27 1 7.0649 -4.8809 2.6998 28 1 -0.3634 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3634 -0.8921 -0.5101 31 1 1.8152 2.1367 -0.0009 32 1 2.1839 -3.1945 -0.5047 33 1 0.5976 -2.3870 -0.4996 34 1 0.4462 -4.6545 0.9487 35 1 -0.7166 -2.8292 3.5589 36 1 -1.6159 -4.2496 2.9740 37 1 -0.9442 -4.2388 4.6220 38 1 -0.3494 -6.3890 2.4274 39 1 0.1766 -6.3673 4.1277 40 1 0.8840 -8.4456 1.8969 41 1 2.5990 -8.6113 2.3430 42 1 1.3499 -8.5664 3.6106 43 1 2.5260 -6.0885 4.6077 44 1 3.7821 -5.6592 5.7657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146275704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:50 Heat of formation + Delta-G solvation = -57.752274 kcal Electronic energy + Delta-G solvation = -26753.993727 eV Core-core repulsion = 23025.558626 eV Total energy + Delta-G solvation = -3728.435101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32389 -40.59439 -38.79263 -38.39842 -36.31328 -34.28532 -33.62691 -32.33923 -30.84732 -30.19988 -27.75358 -27.58063 -25.61298 -24.95681 -23.06577 -22.03796 -21.39793 -21.26277 -19.55633 -19.12697 -18.76756 -18.34653 -17.14523 -16.94681 -16.59974 -16.46010 -16.13015 -15.85972 -15.53853 -15.23777 -15.02605 -14.72424 -14.60037 -14.53952 -14.40000 -13.73937 -13.59157 -13.41299 -13.17305 -12.99652 -12.92474 -12.82791 -12.60056 -12.59096 -12.24688 -12.13323 -11.97270 -11.91284 -11.61628 -11.36488 -11.29481 -11.23151 -10.96820 -10.51914 -10.11667 -9.10146 -8.99516 -8.40898 -5.31705 -0.18832 0.37404 0.82951 1.04349 1.45007 1.48348 1.57358 1.65043 1.71082 2.22030 2.63654 3.37881 3.46682 3.63575 3.70569 3.72909 3.84728 3.98014 4.02672 4.21861 4.28044 4.43933 4.53680 4.58752 4.64931 4.69763 4.73298 4.74482 4.82684 4.91557 4.93079 4.98843 5.13775 5.24341 5.26163 5.32328 5.50677 5.51139 5.59169 5.64823 6.17439 6.48330 6.49033 7.10379 7.19835 8.01328 8.10362 9.11448 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.004653 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.480343 B = 6016.086551 C = 7851.639158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.096 3.904 3 C -0.226 4.226 4 S -0.012 6.012 5 C 0.459 3.541 6 O -0.525 6.525 7 N -0.516 5.516 8 C 0.082 3.918 9 C 0.492 3.508 10 O -0.579 6.579 11 N -0.697 5.697 12 C 0.147 3.853 13 H 0.034 0.966 14 C -0.147 4.147 15 C -0.117 4.117 16 C 0.166 3.834 17 H 0.038 0.962 18 C -0.155 4.155 19 N -0.743 5.743 20 C -0.313 4.313 21 H 0.055 0.945 22 C -0.106 4.106 23 N -0.977 5.977 24 Si 1.113 2.887 25 H -0.289 1.289 26 H -0.269 1.269 27 H -0.298 1.298 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.120 0.880 33 H 0.181 0.819 34 H 0.417 0.583 35 H 0.040 0.960 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.024 0.976 42 H 0.042 0.958 43 H 0.356 0.644 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.195 10.524 -17.135 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.013 4.013 3 C -0.363 4.363 4 S 0.231 5.769 5 C 0.143 3.857 6 O -0.409 6.409 7 N -0.236 5.236 8 C -0.047 4.047 9 C 0.278 3.722 10 O -0.457 6.457 11 N -0.350 5.350 12 C 0.042 3.958 13 H 0.052 0.948 14 C -0.205 4.205 15 C -0.156 4.156 16 C 0.058 3.942 17 H 0.057 0.943 18 C -0.215 4.215 19 N -0.385 5.385 20 C -0.445 4.445 21 H 0.074 0.926 22 C -0.297 4.297 23 N -0.626 5.626 24 Si 0.939 3.061 25 H -0.214 1.214 26 H -0.194 1.194 27 H -0.226 1.226 28 H 0.098 0.902 29 H 0.143 0.857 30 H 0.112 0.888 31 H 0.249 0.751 32 H 0.138 0.862 33 H 0.198 0.802 34 H 0.254 0.746 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.061 0.939 43 H 0.188 0.812 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.671 11.339 -16.192 25.859 hybrid contribution -1.889 -1.423 0.071 2.366 sum -18.560 9.916 -16.121 26.508 Atomic orbital electron populations 1.20950 0.83212 1.06738 1.04464 1.20111 0.97722 0.83728 0.99787 1.25430 0.90192 1.02913 1.17758 1.85063 1.12174 0.99193 1.80498 1.22087 0.84590 0.96465 0.82558 1.90983 1.50264 1.44477 1.55127 1.45715 1.05516 1.08234 1.64134 1.21960 1.03515 0.84797 0.94410 1.21261 0.76929 0.82137 0.91901 1.90750 1.51319 1.55810 1.47869 1.45733 1.60137 1.19873 1.09284 1.20816 0.97642 0.94886 0.82416 0.94800 1.22044 0.96415 1.00102 1.01920 1.22098 0.97312 0.92367 1.03787 1.20502 0.88299 0.93410 0.91942 0.94345 1.22286 1.00398 0.97607 1.01171 1.42596 1.02902 1.83565 1.09447 1.20193 0.86171 1.41630 0.96542 0.92649 1.26843 1.08104 1.00656 0.94130 1.70978 1.17559 1.54875 1.19139 0.82814 0.71851 0.76918 0.74507 1.21432 1.19416 1.22562 0.90156 0.85720 0.88831 0.75055 0.86221 0.80213 0.74605 0.94047 0.89097 0.91573 0.86684 0.90627 0.89948 0.95664 0.93881 0.81219 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.69 71.23 0.69 -0.10 16 2 C 0.10 1.78 6.59 40.71 0.27 2.05 16 3 C -0.23 -3.98 11.25 66.67 0.75 -3.23 16 4 S -0.01 -0.34 22.97 -56.49 -1.30 -1.64 16 5 C 0.46 16.54 8.27 129.87 1.07 17.61 16 6 O -0.53 -24.30 17.55 -4.74 -0.08 -24.38 16 7 N -0.52 -13.81 2.09 -647.49 -1.35 -15.16 16 8 C 0.08 1.79 5.75 85.63 0.49 2.29 16 9 C 0.49 15.31 7.86 87.66 0.69 16.00 16 10 O -0.58 -25.10 16.09 -3.01 -0.05 -25.15 16 11 N -0.70 -17.85 4.45 -442.54 -1.97 -19.82 16 12 C 0.15 4.48 2.52 44.99 0.11 4.59 16 13 H 0.03 1.52 7.06 -2.39 -0.02 1.50 16 14 C -0.15 -3.41 9.48 71.98 0.68 -2.73 16 15 C -0.12 -3.18 4.29 30.59 0.13 -3.05 16 16 C 0.17 6.22 2.84 44.99 0.13 6.35 16 17 H 0.04 1.50 7.56 -2.39 -0.02 1.48 16 18 C -0.15 -5.16 9.49 71.98 0.68 -4.48 16 19 N -0.74 -38.40 4.49 -322.95 -1.45 -39.85 16 20 C -0.31 -18.90 9.93 84.03 0.83 -18.07 16 21 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 22 C -0.11 -6.73 5.50 84.86 0.47 -6.26 16 23 N -0.98 -65.94 13.70 21.65 0.30 -65.64 16 24 Si 1.11 58.90 29.92 68.60 2.05 60.95 16 25 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 26 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.12 0.24 8.10 -2.39 -0.02 0.22 16 30 H 0.09 0.40 6.18 -2.39 -0.01 0.39 16 31 H 0.23 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.12 2.78 7.80 -2.39 -0.02 2.76 16 33 H 0.18 1.60 6.11 -2.39 -0.01 1.58 16 34 H 0.42 6.94 8.60 -92.71 -0.80 6.14 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.36 19.52 6.63 -92.71 -0.61 18.90 16 44 H 0.24 16.25 6.77 -92.71 -0.63 15.62 16 Total: -1.00 -97.47 380.03 2.91 -94.56 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.24 Total: 25.16 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 7.00 Total: 10.98 kcal Atomic # 7 Polarization: -136.00 SS G_CDS: -4.48 Total: -140.47 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.13 Total: -49.53 kcal Atomic # 14 Polarization: 58.90 SS G_CDS: 2.05 Total: 60.95 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -1.30 Total: -1.64 kcal Total: -97.47 2.91 -94.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.805 kcal (2) G-P(sol) polarization free energy of solvation -97.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds