Wall clock time and date at job start Tue Mar 31 2020 15:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32567 * 121.64417 * 2 1 4 4 S 1.77233 * 105.31965 * 180.19751 * 3 2 1 5 5 C 1.72213 * 94.84443 * 359.75782 * 4 3 2 6 6 O 1.21829 * 127.05503 * 180.02562 * 5 4 3 7 7 N 1.34242 * 105.88888 * 0.02562 * 5 4 3 8 8 C 1.46491 * 121.38363 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46858 * 90.02516 * 8 7 5 10 10 O 1.21277 * 120.00128 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99843 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99949 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47062 * 35.00044 * 12 11 9 14 14 C 1.52995 * 109.47194 * 274.99861 * 12 11 9 15 15 C 1.53003 * 109.46950 * 154.99945 * 12 11 9 16 16 C 1.52997 * 109.46992 * 294.99839 * 15 12 11 17 17 H 1.09001 * 109.47375 * 305.00364 * 16 15 12 18 18 C 1.53006 * 109.47164 * 185.00330 * 16 15 12 19 19 N 1.46504 * 109.47417 * 65.00416 * 16 15 12 20 20 C 1.36932 * 120.00287 * 205.00318 * 19 16 15 21 21 H 1.08003 * 120.00064 * 359.97438 * 20 19 16 22 22 C 1.38811 * 120.00254 * 179.97438 * 20 19 16 23 23 N 1.31619 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47242 * 90.00123 * 24 22 20 26 26 H 1.48503 * 109.47238 * 209.99537 * 24 22 20 27 27 H 1.48498 * 109.47308 * 329.99895 * 24 22 20 28 28 H 1.09003 * 109.47215 * 270.24074 * 1 2 3 29 29 H 1.08999 * 109.47739 * 30.24364 * 1 2 3 30 30 H 1.08998 * 109.47292 * 150.24683 * 1 2 3 31 31 H 1.08001 * 127.34343 * 359.93045 * 3 2 1 32 32 H 1.09004 * 109.47404 * 330.02854 * 8 7 5 33 33 H 1.08994 * 109.47511 * 210.02588 * 8 7 5 34 34 H 0.96999 * 119.99953 * 359.97438 * 11 9 8 35 35 H 1.09007 * 109.47317 * 300.00206 * 14 12 11 36 36 H 1.09001 * 109.47362 * 59.99904 * 14 12 11 37 37 H 1.08995 * 109.47174 * 179.97438 * 14 12 11 38 38 H 1.08998 * 109.46717 * 175.00196 * 15 12 11 39 39 H 1.09002 * 109.47471 * 55.00096 * 15 12 11 40 40 H 1.09001 * 109.46801 * 180.02562 * 18 16 15 41 41 H 1.09001 * 109.46998 * 299.99705 * 18 16 15 42 42 H 1.09000 * 109.47050 * 59.99996 * 18 16 15 43 43 H 0.97003 * 119.99624 * 24.99596 * 19 16 15 44 44 H 0.97004 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2024 1.1286 0.0000 4 16 3.9033 0.6304 -0.0059 5 6 3.5606 -1.0573 -0.0007 6 8 4.3673 -1.9702 -0.0015 7 7 2.2221 -1.1605 0.0045 8 6 1.5577 -2.4660 0.0094 9 6 1.3346 -2.9107 1.4320 10 8 1.6947 -2.2061 2.3511 11 7 0.7348 -4.0913 1.6827 12 6 0.5184 -4.5239 3.0656 13 1 0.3001 -3.6560 3.6878 14 6 1.7778 -5.2201 3.5852 15 6 -0.6606 -5.4976 3.1168 16 6 -1.9435 -4.7667 2.7159 17 1 -2.0757 -3.8902 3.3503 18 6 -3.1398 -5.7051 2.8867 19 7 -1.8488 -4.3461 1.3157 20 6 -2.5822 -3.2790 0.8702 21 1 -3.2307 -2.7476 1.5509 22 6 -2.4920 -2.8802 -0.4563 23 7 -1.7012 -3.5275 -1.2858 24 14 -3.4930 -1.4250 -1.0642 25 1 -2.7058 -0.1772 -0.8946 26 1 -3.8184 -1.6134 -2.5008 27 1 -4.7506 -1.3272 -0.2805 28 1 -0.3634 0.0043 1.0277 29 1 -0.3634 0.8877 -0.5176 30 1 -0.3634 -0.8922 -0.5100 31 1 1.8152 2.1368 -0.0010 32 1 2.1843 -3.1946 -0.5049 33 1 0.5981 -2.3873 -0.5014 34 1 0.4465 -4.6546 0.9476 35 1 1.9962 -6.0881 2.9629 36 1 2.6178 -4.5264 3.5487 37 1 1.6170 -5.5415 4.6142 38 1 -0.7659 -5.8877 4.1291 39 1 -0.4813 -6.3220 2.4266 40 1 -4.0537 -5.1844 2.6006 41 1 -3.0076 -6.5815 2.2522 42 1 -3.2103 -6.0180 3.9285 43 1 -1.2665 -4.8236 0.7043 44 1 -1.6380 -3.2486 -2.2127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146275705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:55 Heat of formation + Delta-G solvation = -41.868659 kcal Electronic energy + Delta-G solvation = -27682.964426 eV Core-core repulsion = 23955.218090 eV Total energy + Delta-G solvation = -3727.746335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.25996 -40.49488 -38.69795 -38.23338 -35.79594 -34.10789 -33.55235 -32.26177 -30.98024 -30.10018 -27.72196 -27.49719 -25.52758 -24.88619 -22.95968 -21.72915 -21.63933 -20.93844 -19.11793 -19.03485 -18.57228 -18.23998 -17.23126 -16.73302 -16.61882 -16.12920 -15.97105 -15.54623 -15.38951 -15.23750 -14.87941 -14.61239 -14.51057 -14.34170 -14.20121 -13.71353 -13.49304 -13.28994 -13.27358 -12.89365 -12.87787 -12.73480 -12.60025 -12.50495 -12.29301 -12.12063 -12.07868 -11.73472 -11.56640 -11.40953 -11.29588 -11.20501 -10.81519 -10.42823 -9.91955 -8.96671 -8.79684 -7.79412 -5.03374 -0.13802 0.35861 0.77636 1.07751 1.51748 1.59364 1.60800 1.63349 1.66766 2.40421 2.66203 3.52273 3.53403 3.68435 3.83248 3.89533 4.07194 4.13832 4.16428 4.29970 4.36037 4.52358 4.55956 4.62383 4.63966 4.66579 4.80737 4.86799 4.87978 4.90247 5.06257 5.12039 5.16486 5.21195 5.32128 5.42218 5.62745 5.65662 5.71839 5.73740 6.16801 6.41244 6.59854 7.26748 7.51104 8.21053 8.50230 9.41084 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.005854 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.856948 B = 4782.215477 C = 6687.467391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.097 3.903 3 C -0.226 4.226 4 S 0.028 5.972 5 C 0.461 3.539 6 O -0.522 6.522 7 N -0.513 5.513 8 C 0.079 3.921 9 C 0.515 3.485 10 O -0.584 6.584 11 N -0.684 5.684 12 C 0.149 3.851 13 H 0.059 0.941 14 C -0.153 4.153 15 C -0.119 4.119 16 C 0.164 3.836 17 H 0.032 0.968 18 C -0.154 4.154 19 N -0.720 5.720 20 C -0.223 4.223 21 H 0.055 0.945 22 C -0.044 4.044 23 N -0.947 5.947 24 Si 0.926 3.074 25 H -0.261 1.261 26 H -0.307 1.307 27 H -0.295 1.295 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.231 0.769 32 H 0.116 0.884 33 H 0.143 0.857 34 H 0.407 0.593 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.375 0.625 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 2.479 4.325 6.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.012 4.012 3 C -0.363 4.363 4 S 0.271 5.729 5 C 0.145 3.855 6 O -0.406 6.406 7 N -0.232 5.232 8 C -0.050 4.050 9 C 0.300 3.700 10 O -0.465 6.465 11 N -0.336 5.336 12 C 0.045 3.955 13 H 0.077 0.923 14 C -0.212 4.212 15 C -0.157 4.157 16 C 0.055 3.945 17 H 0.050 0.950 18 C -0.214 4.214 19 N -0.363 5.363 20 C -0.355 4.355 21 H 0.073 0.927 22 C -0.237 4.237 23 N -0.598 5.598 24 Si 0.758 3.242 25 H -0.187 1.187 26 H -0.235 1.235 27 H -0.222 1.222 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.247 0.753 32 H 0.134 0.866 33 H 0.160 0.840 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.209 0.791 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.013 3.189 4.980 8.433 hybrid contribution -1.993 -0.526 -1.127 2.349 sum 4.020 2.663 3.853 6.172 Atomic orbital electron populations 1.20876 0.85797 1.05189 1.03937 1.19784 0.96465 0.84715 1.00244 1.25348 0.91506 1.02127 1.17289 1.84610 1.09826 0.98138 1.80360 1.22034 0.83788 0.96959 0.82680 1.90876 1.49723 1.44205 1.55814 1.45653 1.06122 1.07683 1.63697 1.21807 1.02234 0.84524 0.96388 1.20564 0.77061 0.81750 0.90655 1.90624 1.53507 1.55386 1.47016 1.45921 1.58306 1.19764 1.09578 1.20938 0.95470 0.97059 0.82035 0.92315 1.22117 0.96385 1.00116 1.02535 1.22121 0.92416 0.97298 1.03900 1.20459 0.93378 0.94733 0.85918 0.95034 1.22274 0.98857 0.99527 1.00730 1.42537 1.52222 1.35499 1.06074 1.19303 1.17406 1.05455 0.93379 0.92676 1.24900 1.01421 1.01086 0.96314 1.69678 1.42786 1.43152 1.04184 0.85920 0.79235 0.82675 0.76405 1.18704 1.23456 1.22192 0.90486 0.86899 0.91356 0.75259 0.86612 0.83964 0.75480 0.91372 0.95034 0.89396 0.87457 0.90541 0.95155 0.93458 0.91494 0.79072 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.02 9.50 71.23 0.68 -2.35 16 2 C 0.10 3.02 6.59 40.71 0.27 3.29 16 3 C -0.23 -5.61 11.25 66.67 0.75 -4.86 16 4 S 0.03 0.80 22.97 -56.49 -1.30 -0.50 16 5 C 0.46 17.35 8.27 129.87 1.07 18.42 16 6 O -0.52 -22.50 17.55 -4.76 -0.08 -22.58 16 7 N -0.51 -18.41 2.09 -647.52 -1.35 -19.76 16 8 C 0.08 2.92 5.75 85.64 0.49 3.42 16 9 C 0.51 20.14 7.86 87.66 0.69 20.83 16 10 O -0.58 -26.18 16.09 -3.02 -0.05 -26.23 16 11 N -0.68 -23.42 3.80 -442.53 -1.68 -25.10 16 12 C 0.15 4.49 2.57 44.99 0.12 4.60 16 13 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 14 C -0.15 -3.95 9.48 71.98 0.68 -3.27 16 15 C -0.12 -3.06 4.43 30.59 0.14 -2.93 16 16 C 0.16 5.41 2.89 44.99 0.13 5.54 16 17 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 18 C -0.15 -4.64 9.49 71.98 0.68 -3.96 16 19 N -0.72 -29.18 3.84 -322.93 -1.24 -30.42 16 20 C -0.22 -10.45 9.93 84.03 0.83 -9.62 16 21 H 0.06 2.68 7.83 -2.91 -0.02 2.66 16 22 C -0.04 -2.07 5.50 84.86 0.47 -1.60 16 23 N -0.95 -45.63 12.78 21.65 0.28 -45.35 16 24 Si 0.93 39.36 29.19 68.60 2.00 41.36 16 25 H -0.26 -10.06 6.91 99.48 0.69 -9.38 16 26 H -0.31 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.30 -12.95 7.11 99.48 0.71 -12.25 16 28 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.11 2.70 8.10 -2.39 -0.02 2.68 16 30 H 0.07 2.45 5.81 -2.39 -0.01 2.44 16 31 H 0.23 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.12 4.12 7.80 -2.38 -0.02 4.10 16 33 H 0.14 5.50 5.83 -2.39 -0.01 5.48 16 34 H 0.41 13.81 6.51 -92.71 -0.60 13.20 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.56 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.37 15.60 5.70 -92.71 -0.53 15.07 16 44 H 0.25 12.09 8.31 -92.70 -0.77 11.32 16 Total: -1.00 -60.69 375.84 3.45 -57.25 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -0.13 Total: 43.80 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: 7.00 Total: 27.53 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -4.00 Total: -120.64 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.13 Total: -48.81 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.00 Total: 41.36 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -1.30 Total: -0.50 kcal Total: -60.69 3.45 -57.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.379 kcal (2) G-P(sol) polarization free energy of solvation -60.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds