Wall clock time and date at job start Tue Mar 31 2020 15:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32570 * 121.64954 * 2 1 4 4 S 1.77228 * 105.32159 * 179.97438 * 3 2 1 5 5 C 1.72204 * 94.84832 * 0.02562 * 4 3 2 6 6 O 1.21825 * 127.05758 * 180.02562 * 5 4 3 7 7 N 1.34249 * 105.88571 * 359.97438 * 5 4 3 8 8 C 1.46496 * 121.37744 * 179.72698 * 7 5 4 9 9 C 1.50698 * 109.47403 * 90.03139 * 8 7 5 10 10 O 1.21284 * 119.99350 * 354.64744 * 9 8 7 11 11 N 1.34776 * 120.00401 * 174.64678 * 9 8 7 12 12 C 1.46498 * 120.00149 * 185.04419 * 11 9 8 13 13 H 1.09001 * 109.47143 * 328.52457 * 12 11 9 14 14 C 1.53003 * 109.47024 * 88.52380 * 12 11 9 15 15 C 1.52997 * 109.47360 * 208.52578 * 12 11 9 16 16 C 1.52997 * 109.47091 * 66.58644 * 15 12 11 17 17 H 1.08995 * 109.47294 * 55.09666 * 16 15 12 18 18 C 1.53000 * 109.47004 * 175.09497 * 16 15 12 19 19 N 1.46506 * 109.47250 * 295.09169 * 16 15 12 20 20 C 1.36932 * 119.99905 * 154.48137 * 19 16 15 21 21 H 1.08001 * 120.00371 * 352.85929 * 20 19 16 22 22 C 1.38813 * 119.99957 * 172.86117 * 20 19 16 23 23 N 1.31621 * 120.00374 * 179.23351 * 22 20 19 24 24 Si 1.86799 * 119.99937 * 359.23786 * 22 20 19 25 25 H 1.48507 * 109.47422 * 88.81228 * 24 22 20 26 26 H 1.48504 * 109.47236 * 208.81576 * 24 22 20 27 27 H 1.48502 * 109.47218 * 328.81244 * 24 22 20 28 28 H 1.09001 * 109.47429 * 270.00030 * 1 2 3 29 29 H 1.09006 * 109.47029 * 29.99963 * 1 2 3 30 30 H 1.09003 * 109.46977 * 149.99705 * 1 2 3 31 31 H 1.07996 * 127.33502 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.46918 * 210.02655 * 8 7 5 33 33 H 1.09003 * 109.47382 * 330.02520 * 8 7 5 34 34 H 0.97003 * 119.99551 * 5.04748 * 11 9 8 35 35 H 1.09001 * 109.46745 * 300.00116 * 14 12 11 36 36 H 1.09001 * 109.47098 * 60.00049 * 14 12 11 37 37 H 1.08995 * 109.47129 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.47318 * 186.58726 * 15 12 11 39 39 H 1.09004 * 109.46764 * 306.58877 * 15 12 11 40 40 H 1.08997 * 109.47212 * 179.97438 * 18 16 15 41 41 H 1.09005 * 109.46991 * 300.00198 * 18 16 15 42 42 H 1.09002 * 109.47553 * 59.99762 * 18 16 15 43 43 H 0.97004 * 119.99502 * 334.48374 * 19 16 15 44 44 H 0.96995 * 120.00090 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 0.0008 5 6 3.5606 -1.0573 0.0003 6 8 4.3673 -1.9702 0.0009 7 7 2.2221 -1.1604 0.0001 8 6 1.5577 -2.4661 -0.0062 9 6 1.3296 -2.9206 1.4123 10 8 1.7722 -2.2708 2.3358 11 7 0.6337 -4.0490 1.6548 12 6 0.3168 -4.4324 3.0328 13 1 1.1101 -4.0894 3.6969 14 6 -1.0090 -3.7917 3.4483 15 6 0.1981 -5.9551 3.1241 16 6 1.5667 -6.5895 2.8685 17 1 2.2968 -6.1696 3.5603 18 6 1.4751 -8.1021 3.0799 19 7 1.9836 -6.3133 1.4914 20 6 3.3143 -6.2964 1.1693 21 1 4.0594 -6.3715 1.9476 22 6 3.7059 -6.1826 -0.1576 23 7 4.9850 -6.1512 -0.4660 24 14 2.4172 -6.0740 -1.5056 25 1 2.0489 -4.6522 -1.7250 26 1 2.9666 -6.6428 -2.7626 27 1 1.2116 -6.8408 -1.1008 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.8153 2.1367 0.0004 32 1 0.5998 -2.3837 -0.5198 33 1 2.1861 -3.1911 -0.5235 34 1 0.3427 -4.6074 0.9169 35 1 -0.9243 -2.7069 3.3833 36 1 -1.8023 -4.1347 2.7842 37 1 -1.2445 -4.0765 4.4737 38 1 -0.1514 -6.2333 4.1184 39 1 -0.5120 -6.3096 2.3769 40 1 2.4499 -8.5541 2.8973 41 1 1.1648 -8.3076 4.1044 42 1 0.7449 -8.5221 2.3880 43 1 1.3168 -6.1423 0.8079 44 1 5.2586 -6.0721 -1.3932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146275706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:00 Heat of formation + Delta-G solvation = -14.910763 kcal Electronic energy + Delta-G solvation = -27589.247411 eV Core-core repulsion = 23862.670058 eV Total energy + Delta-G solvation = -3726.577353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.00837 -39.23228 -37.30059 -36.90118 -34.40227 -32.61912 -32.17559 -31.13543 -29.89567 -29.06133 -26.67967 -26.38438 -23.64371 -23.32159 -21.77759 -20.61624 -20.28501 -19.64242 -17.94602 -17.58541 -17.35504 -16.98353 -15.90683 -15.37796 -15.19634 -14.76728 -14.60172 -14.34584 -14.11535 -13.73364 -13.66588 -13.56461 -13.36938 -13.18259 -12.79793 -12.65186 -12.44683 -12.17872 -12.10235 -11.93324 -11.78192 -11.47271 -11.13649 -11.01936 -10.85301 -10.78062 -10.52898 -10.39903 -10.06288 -9.96741 -9.74886 -9.56565 -9.18975 -8.97714 -8.65079 -7.74575 -7.22546 -5.71748 -3.07146 1.16786 1.55506 1.95031 2.39997 2.86854 2.89615 3.12098 3.24983 3.36047 3.53266 4.47199 4.53471 4.71550 4.81153 4.98333 5.00003 5.22704 5.23572 5.25040 5.36267 5.43642 5.48150 5.55525 5.57309 5.59803 5.67326 5.75583 5.82417 5.99628 6.11993 6.14559 6.20599 6.29222 6.37494 6.43202 6.75971 6.84702 6.87614 6.99509 7.61801 7.75739 8.03758 8.46099 8.49323 9.22241 9.93284 10.12976 11.47348 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.005650 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.667921 B = 4954.735086 C = 6323.076817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.112 3.888 3 C -0.247 4.247 4 S -0.015 6.015 5 C 0.486 3.514 6 O -0.434 6.434 7 N -0.516 5.516 8 C 0.070 3.930 9 C 0.516 3.484 10 O -0.533 6.533 11 N -0.701 5.701 12 C 0.148 3.852 13 H 0.091 0.909 14 C -0.161 4.161 15 C -0.135 4.135 16 C 0.175 3.825 17 H 0.056 0.944 18 C -0.164 4.164 19 N -0.739 5.739 20 C -0.238 4.238 21 H 0.088 0.912 22 C 0.011 3.989 23 N -0.923 5.923 24 Si 0.866 3.134 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.276 1.276 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.188 0.812 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.395 0.605 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.043 0.957 43 H 0.351 0.649 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.400 11.377 1.746 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.000 4.000 3 C -0.385 4.385 4 S 0.227 5.773 5 C 0.166 3.834 6 O -0.308 6.308 7 N -0.237 5.237 8 C -0.059 4.059 9 C 0.301 3.699 10 O -0.409 6.409 11 N -0.353 5.353 12 C 0.044 3.956 13 H 0.109 0.891 14 C -0.219 4.219 15 C -0.174 4.174 16 C 0.066 3.934 17 H 0.074 0.926 18 C -0.224 4.224 19 N -0.383 5.383 20 C -0.369 4.369 21 H 0.106 0.894 22 C -0.186 4.186 23 N -0.570 5.570 24 Si 0.697 3.303 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.202 1.202 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.205 0.795 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.230 0.770 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.184 0.816 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.084 11.867 2.425 18.576 hybrid contribution -2.089 -1.090 -1.506 2.796 sum -16.172 10.777 0.919 19.456 Atomic orbital electron populations 1.20776 0.87189 1.04018 1.03956 1.19326 0.95520 0.85095 1.00010 1.24692 0.93434 1.00831 1.19582 1.84987 1.08389 1.01982 1.81939 1.21551 0.83744 0.95540 0.82552 1.91159 1.47937 1.41495 1.50245 1.45598 1.06399 1.06278 1.65447 1.21995 1.01079 0.85695 0.97177 1.20351 0.77583 0.81384 0.90618 1.90687 1.48892 1.55914 1.45398 1.45817 1.56468 1.24107 1.08937 1.20896 0.96891 0.94360 0.83476 0.89103 1.22202 0.97305 1.01088 1.01307 1.22252 0.99304 0.93678 1.02183 1.20248 0.92721 0.92507 0.87934 0.92588 1.22399 1.01881 0.99299 0.98840 1.42724 1.04637 1.86168 1.04766 1.18997 0.82092 1.42679 0.93090 0.89429 1.24653 0.95184 1.02351 0.96388 1.69642 1.13208 1.56593 1.17551 0.86932 0.82224 0.77163 0.83950 1.21196 1.21627 1.20240 0.89624 0.89197 0.90854 0.79483 0.86906 0.84732 0.77026 0.92631 0.92732 0.91745 0.90317 0.91855 0.92324 0.94306 0.93812 0.81645 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 9.70 36.00 0.35 -0.48 16 2 C 0.11 1.43 6.59 -82.51 -0.54 0.88 16 3 C -0.25 -2.89 11.24 28.83 0.32 -2.57 16 4 S -0.02 -0.23 22.97 -107.50 -2.47 -2.70 16 5 C 0.49 9.84 8.26 53.82 0.44 10.29 16 6 O -0.43 -11.03 17.55 5.08 0.09 -10.94 16 7 N -0.52 -8.75 2.10 -118.57 -0.25 -9.00 16 8 C 0.07 1.16 5.75 -5.20 -0.03 1.14 16 9 C 0.52 9.35 7.88 -10.99 -0.09 9.26 16 10 O -0.53 -11.39 16.00 5.55 0.09 -11.30 16 11 N -0.70 -11.00 3.66 -53.81 -0.20 -11.20 16 12 C 0.15 2.12 2.65 -67.93 -0.18 1.94 16 13 H 0.09 1.57 7.40 -51.93 -0.38 1.19 16 14 C -0.16 -1.77 9.51 37.16 0.35 -1.42 16 15 C -0.14 -1.83 4.42 -26.73 -0.12 -1.95 16 16 C 0.18 3.16 2.89 -67.93 -0.20 2.96 16 17 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 18 C -0.16 -2.75 9.50 37.16 0.35 -2.39 16 19 N -0.74 -16.14 3.66 -53.43 -0.20 -16.34 16 20 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 23 N -0.92 -29.60 13.97 55.49 0.78 -28.82 16 24 Si 0.87 20.70 27.21 -169.99 -4.63 16.08 16 25 H -0.28 -6.20 5.42 56.52 0.31 -5.89 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.06 6.70 56.52 0.38 -5.68 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.07 0.55 6.18 -51.93 -0.32 0.23 16 31 H 0.19 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.33 6.12 -51.93 -0.32 1.01 16 33 H 0.14 2.73 5.60 -51.93 -0.29 2.44 16 34 H 0.39 5.77 6.89 -40.82 -0.28 5.49 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.35 7.22 3.89 -40.82 -0.16 7.06 16 44 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -36.78 370.61 -7.28 -44.06 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.50 Total: 13.46 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 0.42 Total: 11.12 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: 0.13 Total: -65.36 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.18 Total: -22.24 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.63 Total: 16.08 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.47 Total: -2.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.78 -7.28 -44.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.152 kcal (2) G-P(sol) polarization free energy of solvation -36.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds