Wall clock time and date at job start Tue Mar 31 2020 15:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32570 * 121.64954 * 2 1 4 4 S 1.77228 * 105.32159 * 179.97438 * 3 2 1 5 5 C 1.72204 * 94.84832 * 0.02562 * 4 3 2 6 6 O 1.21825 * 127.05758 * 180.02562 * 5 4 3 7 7 N 1.34249 * 105.88571 * 359.97438 * 5 4 3 8 8 C 1.46496 * 121.37744 * 179.72698 * 7 5 4 9 9 C 1.50698 * 109.47403 * 90.03139 * 8 7 5 10 10 O 1.21284 * 119.99350 * 354.64744 * 9 8 7 11 11 N 1.34776 * 120.00401 * 174.64678 * 9 8 7 12 12 C 1.46498 * 120.00149 * 185.04419 * 11 9 8 13 13 H 1.09001 * 109.47143 * 328.52457 * 12 11 9 14 14 C 1.53003 * 109.47024 * 88.52380 * 12 11 9 15 15 C 1.52997 * 109.47360 * 208.52578 * 12 11 9 16 16 C 1.52997 * 109.47091 * 66.58644 * 15 12 11 17 17 H 1.08995 * 109.47294 * 55.09666 * 16 15 12 18 18 C 1.53000 * 109.47004 * 175.09497 * 16 15 12 19 19 N 1.46506 * 109.47250 * 295.09169 * 16 15 12 20 20 C 1.36932 * 119.99905 * 154.48137 * 19 16 15 21 21 H 1.08001 * 120.00371 * 352.85929 * 20 19 16 22 22 C 1.38813 * 119.99957 * 172.86117 * 20 19 16 23 23 N 1.31621 * 120.00374 * 179.23351 * 22 20 19 24 24 Si 1.86799 * 119.99937 * 359.23786 * 22 20 19 25 25 H 1.48507 * 109.47422 * 88.81228 * 24 22 20 26 26 H 1.48504 * 109.47236 * 208.81576 * 24 22 20 27 27 H 1.48502 * 109.47218 * 328.81244 * 24 22 20 28 28 H 1.09001 * 109.47429 * 270.00030 * 1 2 3 29 29 H 1.09006 * 109.47029 * 29.99963 * 1 2 3 30 30 H 1.09003 * 109.46977 * 149.99705 * 1 2 3 31 31 H 1.07996 * 127.33502 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.46918 * 210.02655 * 8 7 5 33 33 H 1.09003 * 109.47382 * 330.02520 * 8 7 5 34 34 H 0.97003 * 119.99551 * 5.04748 * 11 9 8 35 35 H 1.09001 * 109.46745 * 300.00116 * 14 12 11 36 36 H 1.09001 * 109.47098 * 60.00049 * 14 12 11 37 37 H 1.08995 * 109.47129 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.47318 * 186.58726 * 15 12 11 39 39 H 1.09004 * 109.46764 * 306.58877 * 15 12 11 40 40 H 1.08997 * 109.47212 * 179.97438 * 18 16 15 41 41 H 1.09005 * 109.46991 * 300.00198 * 18 16 15 42 42 H 1.09002 * 109.47553 * 59.99762 * 18 16 15 43 43 H 0.97004 * 119.99502 * 334.48374 * 19 16 15 44 44 H 0.96995 * 120.00090 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 0.0008 5 6 3.5606 -1.0573 0.0003 6 8 4.3673 -1.9702 0.0009 7 7 2.2221 -1.1604 0.0001 8 6 1.5577 -2.4661 -0.0062 9 6 1.3296 -2.9206 1.4123 10 8 1.7722 -2.2708 2.3358 11 7 0.6337 -4.0490 1.6548 12 6 0.3168 -4.4324 3.0328 13 1 1.1101 -4.0894 3.6969 14 6 -1.0090 -3.7917 3.4483 15 6 0.1981 -5.9551 3.1241 16 6 1.5667 -6.5895 2.8685 17 1 2.2968 -6.1696 3.5603 18 6 1.4751 -8.1021 3.0799 19 7 1.9836 -6.3133 1.4914 20 6 3.3143 -6.2964 1.1693 21 1 4.0594 -6.3715 1.9476 22 6 3.7059 -6.1826 -0.1576 23 7 4.9850 -6.1512 -0.4660 24 14 2.4172 -6.0740 -1.5056 25 1 2.0489 -4.6522 -1.7250 26 1 2.9666 -6.6428 -2.7626 27 1 1.2116 -6.8408 -1.1008 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.8153 2.1367 0.0004 32 1 0.5998 -2.3837 -0.5198 33 1 2.1861 -3.1911 -0.5235 34 1 0.3427 -4.6074 0.9169 35 1 -0.9243 -2.7069 3.3833 36 1 -1.8023 -4.1347 2.7842 37 1 -1.2445 -4.0765 4.4737 38 1 -0.1514 -6.2333 4.1184 39 1 -0.5120 -6.3096 2.3769 40 1 2.4499 -8.5541 2.8973 41 1 1.1648 -8.3076 4.1044 42 1 0.7449 -8.5221 2.3880 43 1 1.3168 -6.1423 0.8079 44 1 5.2586 -6.0721 -1.3932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146275706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:00 Heat of formation + Delta-G solvation = -43.052944 kcal Electronic energy + Delta-G solvation = -27590.467748 eV Core-core repulsion = 23862.670058 eV Total energy + Delta-G solvation = -3727.797690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.29746 -40.59109 -38.77214 -38.36825 -35.97626 -34.23110 -33.60248 -32.54378 -31.21714 -30.51766 -27.72224 -27.52553 -25.34721 -24.93548 -23.01184 -22.00608 -21.62135 -21.05972 -19.63358 -19.11267 -18.71464 -18.33852 -17.24423 -16.75657 -16.64757 -16.44412 -16.03060 -15.94216 -15.28331 -15.12164 -14.93185 -14.60350 -14.56394 -14.44680 -14.31106 -14.14848 -13.78176 -13.44128 -13.22989 -13.06392 -12.86652 -12.69659 -12.58179 -12.51387 -12.33404 -12.11220 -12.10889 -11.87683 -11.68467 -11.50102 -11.32491 -11.24429 -10.94162 -10.49185 -10.04709 -9.22227 -8.96662 -7.98494 -5.31181 -0.18283 0.40307 0.85991 1.08578 1.18252 1.34418 1.42065 1.52052 1.66898 2.28647 2.48022 3.34419 3.44888 3.55213 3.66557 3.74058 3.82807 4.01954 4.10137 4.21329 4.31360 4.52770 4.55334 4.62550 4.64972 4.73854 4.77893 4.84403 4.88497 4.92583 5.03057 5.05720 5.12756 5.27389 5.34071 5.36751 5.55830 5.61772 5.68708 5.81052 6.22457 6.24600 6.45924 7.11959 7.16370 7.84852 8.07187 9.24590 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.005650 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.667921 B = 4954.735086 C = 6323.076817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.091 3.909 3 C -0.222 4.222 4 S -0.006 6.006 5 C 0.453 3.547 6 O -0.519 6.519 7 N -0.517 5.517 8 C 0.067 3.933 9 C 0.511 3.489 10 O -0.575 6.575 11 N -0.693 5.693 12 C 0.143 3.857 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.120 4.120 16 C 0.164 3.836 17 H 0.020 0.980 18 C -0.155 4.155 19 N -0.734 5.734 20 C -0.221 4.221 21 H 0.030 0.970 22 C -0.069 4.069 23 N -0.987 5.987 24 Si 0.938 3.062 25 H -0.254 1.254 26 H -0.308 1.308 27 H -0.230 1.230 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.238 0.762 32 H 0.169 0.831 33 H 0.096 0.904 34 H 0.403 0.597 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.363 0.637 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.759 12.858 1.312 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.018 4.018 3 C -0.359 4.359 4 S 0.236 5.764 5 C 0.136 3.864 6 O -0.401 6.401 7 N -0.237 5.237 8 C -0.062 4.062 9 C 0.296 3.704 10 O -0.455 6.455 11 N -0.344 5.344 12 C 0.039 3.961 13 H 0.068 0.932 14 C -0.205 4.205 15 C -0.159 4.159 16 C 0.056 3.944 17 H 0.038 0.962 18 C -0.215 4.215 19 N -0.379 5.379 20 C -0.352 4.352 21 H 0.048 0.952 22 C -0.260 4.260 23 N -0.637 5.637 24 Si 0.764 3.236 25 H -0.179 1.179 26 H -0.236 1.236 27 H -0.154 1.154 28 H 0.107 0.893 29 H 0.146 0.854 30 H 0.103 0.897 31 H 0.255 0.745 32 H 0.186 0.814 33 H 0.114 0.886 34 H 0.240 0.760 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.039 0.961 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.197 0.803 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.585 13.374 2.043 24.633 hybrid contribution -0.050 -1.460 -1.199 1.890 sum -20.635 11.914 0.844 23.843 Atomic orbital electron populations 1.20969 0.83172 1.06460 1.04815 1.20174 0.97856 0.83636 1.00154 1.25438 0.90014 1.02734 1.17671 1.84881 1.12188 0.98436 1.80882 1.22272 0.84636 0.96719 0.82742 1.91102 1.50262 1.44543 1.54186 1.45724 1.05717 1.07835 1.64403 1.22073 1.02578 0.85126 0.96383 1.20644 0.77203 0.81733 0.90773 1.90662 1.50667 1.57449 1.46730 1.45853 1.55443 1.23205 1.09948 1.21035 0.97733 0.95330 0.82003 0.93210 1.22075 0.95367 1.00037 1.03008 1.22183 0.96245 0.92286 1.05142 1.20506 0.94890 0.93988 0.84966 0.96157 1.22259 1.00359 0.97356 1.01503 1.42556 1.02277 1.86274 1.06810 1.18754 0.83919 1.40870 0.91705 0.95161 1.25631 0.97896 1.02671 0.99761 1.69929 1.16868 1.59375 1.17560 0.85765 0.80134 0.79342 0.78367 1.17938 1.23556 1.15351 0.89342 0.85420 0.89742 0.74517 0.81362 0.88586 0.76049 0.93742 0.90032 0.89836 0.86784 0.88966 0.96079 0.90806 0.92162 0.80269 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 9.70 71.23 0.69 -0.41 16 2 C 0.09 2.05 6.59 40.71 0.27 2.32 16 3 C -0.22 -4.44 11.24 66.67 0.75 -3.69 16 4 S -0.01 -0.20 22.97 -56.49 -1.30 -1.50 16 5 C 0.45 19.38 8.26 129.87 1.07 20.45 16 6 O -0.52 -29.03 17.55 -4.75 -0.08 -29.12 16 7 N -0.52 -17.39 2.10 -647.51 -1.36 -18.76 16 8 C 0.07 2.20 5.75 85.63 0.49 2.69 16 9 C 0.51 18.41 7.88 87.66 0.69 19.10 16 10 O -0.58 -25.36 16.00 -3.04 -0.05 -25.41 16 11 N -0.69 -20.50 3.66 -442.54 -1.62 -22.12 16 12 C 0.14 3.80 2.65 44.99 0.12 3.92 16 13 H 0.05 1.75 7.40 -2.39 -0.02 1.73 16 14 C -0.15 -2.63 9.51 71.98 0.68 -1.94 16 15 C -0.12 -2.81 4.42 30.59 0.14 -2.67 16 16 C 0.16 5.84 2.89 44.99 0.13 5.97 16 17 H 0.02 0.86 8.08 -2.39 -0.02 0.84 16 18 C -0.16 -4.95 9.50 71.98 0.68 -4.27 16 19 N -0.73 -32.17 3.66 -322.94 -1.18 -33.35 16 20 C -0.22 -13.01 10.41 84.03 0.88 -12.14 16 21 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 22 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 23 N -0.99 -68.30 13.97 21.65 0.30 -68.00 16 24 Si 0.94 43.39 27.21 68.60 1.87 45.26 16 25 H -0.25 -10.43 5.42 99.48 0.54 -9.89 16 26 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 27 H -0.23 -8.83 6.70 99.48 0.67 -8.16 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.13 0.55 8.10 -2.38 -0.02 0.53 16 30 H 0.08 0.80 6.18 -2.39 -0.01 0.79 16 31 H 0.24 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.17 3.35 6.12 -2.39 -0.01 3.34 16 33 H 0.10 3.97 5.60 -2.39 -0.01 3.96 16 34 H 0.40 10.42 6.89 -92.71 -0.64 9.79 16 35 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.36 14.13 3.89 -92.71 -0.36 13.77 16 44 H 0.25 16.75 8.31 -92.71 -0.77 15.98 16 Total: -1.00 -96.22 370.61 3.46 -92.76 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.18 Total: 34.62 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 7.06 Total: 25.60 kcal Atomic # 7 Polarization: -138.36 SS G_CDS: -3.86 Total: -142.22 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -0.13 Total: -54.53 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.87 Total: 45.26 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.30 Total: -1.50 kcal Total: -96.22 3.46 -92.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.712 kcal (2) G-P(sol) polarization free energy of solvation -96.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds