Wall clock time and date at job start Tue Mar 31 2020 16:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46908 * 109.47312 * 89.69230 * 7 6 5 9 9 C 1.46898 * 110.99933 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46772 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46820 * 180.02562 * 10 9 8 12 12 N 1.46503 * 109.46987 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00102 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99752 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99898 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.46929 * 179.97438 * 15 13 12 17 17 C 1.76193 * 99.99984 * 180.02562 * 16 15 13 18 18 H 1.08008 * 120.00063 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00104 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00228 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99817 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47315 * 90.00091 * 21 19 17 23 23 H 1.48504 * 109.46990 * 209.99906 * 21 19 17 24 24 H 1.48497 * 109.47160 * 329.99870 * 21 19 17 25 25 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 26 26 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 28 28 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 29 29 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 30 30 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 31 31 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 32 32 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 33 33 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 34 34 H 1.00897 * 110.99649 * 56.04199 * 8 7 6 35 35 H 1.09003 * 109.47128 * 299.99873 * 9 8 7 36 36 H 1.09000 * 109.46676 * 60.00170 * 9 8 7 37 37 H 1.08998 * 109.47341 * 300.00425 * 10 9 8 38 38 H 1.09007 * 109.46847 * 60.00133 * 10 9 8 39 39 H 1.08998 * 109.46951 * 299.99451 * 11 10 9 40 40 H 1.08993 * 109.47492 * 60.00517 * 11 10 9 41 41 H 0.97005 * 120.00146 * 359.97438 * 12 11 10 42 42 H 1.08993 * 109.46784 * 299.99603 * 15 13 12 43 43 H 1.09002 * 109.46555 * 59.99638 * 15 13 12 44 44 H 0.96998 * 120.00323 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5723 4.4362 -1.8146 9 6 5.0109 5.5456 -2.6717 10 6 6.5118 5.4195 -2.9408 11 6 6.9687 6.5754 -3.8330 12 7 8.4057 6.4544 -4.0912 13 6 9.0318 7.3684 -4.8587 14 8 8.4055 8.2909 -5.3360 15 6 10.5102 7.2442 -5.1239 16 16 11.0507 8.6116 -6.1794 17 6 12.7641 8.2271 -6.3246 18 1 13.1660 7.3560 -5.8284 19 6 13.5975 9.0444 -7.0757 20 7 14.8776 8.7575 -7.1837 21 14 12.9025 10.5513 -7.9332 22 1 12.9871 11.7218 -7.0232 23 1 13.6850 10.8247 -9.1653 24 1 11.4828 10.3055 -8.2928 25 8 2.2982 2.1758 -1.0840 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 2.1912 1.8686 2.1113 32 1 2.5770 4.4844 -2.4705 33 1 2.9194 5.4648 -1.0249 34 1 4.8058 3.5459 -2.2282 35 1 4.4679 5.5117 -3.6162 36 1 4.8103 6.4928 -2.1709 37 1 7.0545 5.4536 -1.9962 38 1 6.7128 4.4723 -3.4414 39 1 6.4261 6.5417 -4.7777 40 1 6.7678 7.5224 -3.3321 41 1 8.9068 5.7168 -3.7092 42 1 11.0527 7.2776 -4.1792 43 1 10.7110 6.2973 -5.6251 44 1 15.4600 9.3284 -7.7089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154802215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:47 Heat of formation + Delta-G solvation = -28.199470 kcal Electronic energy + Delta-G solvation = -23192.480317 eV Core-core repulsion = 19465.326722 eV Total energy + Delta-G solvation = -3727.153595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.78068 -39.30996 -37.48044 -35.31071 -35.11872 -34.62594 -32.43619 -32.17046 -30.05402 -28.89011 -26.69224 -25.60957 -24.35849 -23.75541 -22.53882 -21.90104 -21.24416 -20.39753 -17.87605 -17.50081 -17.22298 -16.78833 -16.34113 -16.09451 -15.70255 -15.52002 -15.15158 -14.98792 -14.78601 -14.67395 -14.01464 -13.81367 -13.74652 -13.33218 -13.21357 -13.00019 -12.86209 -12.79404 -12.32197 -12.17055 -11.98835 -11.85522 -11.80721 -11.69697 -11.25879 -11.21735 -11.00106 -10.88014 -10.59911 -9.85311 -9.53378 -9.26038 -9.04294 -9.01019 -8.95448 -8.49555 -6.91245 -6.28364 -4.00108 0.93243 2.09325 2.24074 2.76638 2.98191 3.26760 3.34034 3.46864 3.51173 3.64857 3.81775 4.13570 4.33796 4.34477 4.48258 4.55089 4.57142 4.65906 4.71677 4.73495 4.83407 4.84428 4.98223 5.10765 5.11830 5.15733 5.17670 5.31044 5.32279 5.34387 5.46880 5.51706 5.60890 5.75498 5.83770 5.84482 5.89082 6.02416 6.27163 6.53172 6.68144 7.31657 7.61072 7.94687 8.42216 8.49377 9.17885 10.80906 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.044487 B = 0.001349 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.248205 B =20744.723814 C =20999.648139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.039 4.039 3 C -0.043 4.043 4 C -0.041 4.041 5 N -0.461 5.461 6 C 0.188 3.812 7 C 0.159 3.841 8 N -0.683 5.683 9 C 0.063 3.937 10 C -0.129 4.129 11 C 0.123 3.877 12 N -0.737 5.737 13 C 0.530 3.470 14 O -0.520 6.520 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 O -0.202 6.202 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.183 0.817 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.346 0.654 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.322 -18.355 15.206 37.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 C -0.096 4.096 4 C -0.180 4.180 5 N -0.190 5.190 6 C -0.020 4.020 7 C 0.029 3.971 8 N -0.316 5.316 9 C -0.066 4.066 10 C -0.168 4.168 11 C -0.002 4.002 12 N -0.392 5.392 13 C 0.316 3.684 14 O -0.395 6.395 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 O -0.089 6.089 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.200 0.800 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.164 0.836 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -29.844 -15.926 15.223 37.095 hybrid contribution 0.464 -1.725 -0.763 1.942 sum -29.380 -17.651 14.460 37.200 Atomic orbital electron populations 1.21809 0.93590 1.02712 1.02756 1.20085 0.96528 0.86420 1.04597 1.23525 1.05341 0.96184 0.84547 1.23123 1.04590 0.89905 1.00416 1.70444 1.16948 1.22443 1.09177 1.26038 0.99463 0.86012 0.90447 1.20219 0.89104 0.91920 0.95819 1.60403 1.13404 1.06854 1.50948 1.21885 0.95114 0.94649 0.94919 1.21738 0.95524 0.98689 1.00804 1.21181 0.81403 0.98405 0.99180 1.45941 1.09421 1.30050 1.53762 1.20286 0.89240 0.81425 0.77452 1.90698 1.67286 1.32106 1.49402 1.23282 0.93867 1.05379 1.04975 1.84780 1.10300 1.33403 1.63111 1.22325 0.90722 1.16116 1.37786 0.89386 1.24708 0.94096 0.97480 0.94966 1.69937 1.03692 1.38589 1.39510 0.86735 0.81725 0.83363 0.80034 1.19190 1.19937 1.15932 1.84380 1.64086 1.23668 1.36793 0.91218 0.92005 0.92291 0.89779 0.88339 0.79988 0.91990 0.86526 0.83590 0.94147 0.89819 0.90015 0.91217 0.91661 0.91380 0.76598 0.88451 0.88459 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 9.89 37.16 0.37 -0.10 16 2 C -0.04 -0.14 6.49 -27.88 -0.18 -0.32 16 3 C -0.04 -0.31 6.64 -35.69 -0.24 -0.54 16 4 C -0.04 -0.33 11.80 -17.77 -0.21 -0.54 16 5 N -0.46 -4.79 11.29 -11.10 -0.13 -4.92 16 6 C 0.19 1.67 7.86 -12.95 -0.10 1.57 16 7 C 0.16 1.02 6.31 -4.97 -0.03 0.99 16 8 N -0.68 -4.63 6.49 -115.05 -0.75 -5.38 16 9 C 0.06 0.39 5.68 -3.82 -0.02 0.37 16 10 C -0.13 -0.91 5.59 -26.73 -0.15 -1.05 16 11 C 0.12 1.25 5.67 -4.04 -0.02 1.23 16 12 N -0.74 -9.08 5.56 -60.29 -0.33 -9.41 16 13 C 0.53 9.35 7.85 -10.98 -0.09 9.26 16 14 O -0.52 -11.21 15.86 5.56 0.09 -11.12 16 15 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 18 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 21 Si 0.86 21.83 27.74 -169.99 -4.71 17.11 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 O -0.20 -1.76 10.78 5.35 0.06 -1.71 16 26 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.35 2.17 8.72 -39.29 -0.34 1.82 16 35 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 3.79 8.47 -40.82 -0.35 3.45 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -36.52 390.39 -8.38 -44.90 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.03 Total: -0.51 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.24 Total: -3.37 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.43 Total: -45.58 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.15 Total: -12.83 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.52 -8.38 -44.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.701 kcal (2) G-P(sol) polarization free energy of solvation -36.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds