Wall clock time and date at job start Tue Mar 31 2020 16:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46908 * 109.47312 * 89.69230 * 7 6 5 9 9 C 1.46898 * 110.99933 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46772 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46820 * 180.02562 * 10 9 8 12 12 N 1.46503 * 109.46987 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00102 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99752 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99898 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.46929 * 179.97438 * 15 13 12 17 17 C 1.76193 * 99.99984 * 180.02562 * 16 15 13 18 18 H 1.08008 * 120.00063 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00104 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00228 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99817 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47315 * 90.00091 * 21 19 17 23 23 H 1.48504 * 109.46990 * 209.99906 * 21 19 17 24 24 H 1.48497 * 109.47160 * 329.99870 * 21 19 17 25 25 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 26 26 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 28 28 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 29 29 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 30 30 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 31 31 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 32 32 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 33 33 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 34 34 H 1.00897 * 110.99649 * 56.04199 * 8 7 6 35 35 H 1.09003 * 109.47128 * 299.99873 * 9 8 7 36 36 H 1.09000 * 109.46676 * 60.00170 * 9 8 7 37 37 H 1.08998 * 109.47341 * 300.00425 * 10 9 8 38 38 H 1.09007 * 109.46847 * 60.00133 * 10 9 8 39 39 H 1.08998 * 109.46951 * 299.99451 * 11 10 9 40 40 H 1.08993 * 109.47492 * 60.00517 * 11 10 9 41 41 H 0.97005 * 120.00146 * 359.97438 * 12 11 10 42 42 H 1.08993 * 109.46784 * 299.99603 * 15 13 12 43 43 H 1.09002 * 109.46555 * 59.99638 * 15 13 12 44 44 H 0.96998 * 120.00323 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5723 4.4362 -1.8146 9 6 5.0109 5.5456 -2.6717 10 6 6.5118 5.4195 -2.9408 11 6 6.9687 6.5754 -3.8330 12 7 8.4057 6.4544 -4.0912 13 6 9.0318 7.3684 -4.8587 14 8 8.4055 8.2909 -5.3360 15 6 10.5102 7.2442 -5.1239 16 16 11.0507 8.6116 -6.1794 17 6 12.7641 8.2271 -6.3246 18 1 13.1660 7.3560 -5.8284 19 6 13.5975 9.0444 -7.0757 20 7 14.8776 8.7575 -7.1837 21 14 12.9025 10.5513 -7.9332 22 1 12.9871 11.7218 -7.0232 23 1 13.6850 10.8247 -9.1653 24 1 11.4828 10.3055 -8.2928 25 8 2.2982 2.1758 -1.0840 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 2.1912 1.8686 2.1113 32 1 2.5770 4.4844 -2.4705 33 1 2.9194 5.4648 -1.0249 34 1 4.8058 3.5459 -2.2282 35 1 4.4679 5.5117 -3.6162 36 1 4.8103 6.4928 -2.1709 37 1 7.0545 5.4536 -1.9962 38 1 6.7128 4.4723 -3.4414 39 1 6.4261 6.5417 -4.7777 40 1 6.7678 7.5224 -3.3321 41 1 8.9068 5.7168 -3.7092 42 1 11.0527 7.2776 -4.1792 43 1 10.7110 6.2973 -5.6251 44 1 15.4600 9.3284 -7.7089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154802215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:46 Heat of formation + Delta-G solvation = -57.634769 kcal Electronic energy + Delta-G solvation = -23193.756728 eV Core-core repulsion = 19465.326722 eV Total energy + Delta-G solvation = -3728.430005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.36590 -40.63858 -38.08733 -36.19359 -35.74594 -35.12078 -34.66906 -33.03986 -31.07922 -29.79017 -27.87700 -27.27392 -24.95526 -24.32177 -23.05948 -22.54730 -21.82330 -21.68168 -19.86711 -18.11590 -17.83877 -17.76467 -17.40767 -17.21254 -17.01885 -16.68281 -16.00190 -15.85706 -15.69511 -15.43851 -15.26127 -14.90874 -14.66254 -14.59155 -14.19023 -13.83450 -13.65939 -13.43954 -13.34585 -13.20432 -13.00017 -12.90075 -12.61557 -12.56242 -12.45923 -12.35915 -12.12738 -11.86384 -11.85429 -11.47280 -11.16690 -11.00968 -10.53271 -10.11947 -9.78546 -9.52184 -8.99193 -8.51218 -6.22099 0.36811 0.99880 1.32117 1.47351 1.54738 1.57621 1.58751 1.66088 2.23177 2.27447 2.72064 2.87218 2.95092 3.25858 3.72254 3.85577 3.98773 4.02424 4.03744 4.15516 4.18308 4.24527 4.27950 4.28874 4.43246 4.48382 4.55904 4.57664 4.69443 4.72150 4.78604 4.93154 4.97820 5.15902 5.17882 5.19193 5.27754 5.31246 5.44925 5.70994 5.79084 6.11682 6.21520 6.48598 6.72355 6.94087 7.20770 8.61246 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.044487 B = 0.001349 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.248205 B =20744.723814 C =20999.648139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C -0.041 4.041 4 C -0.062 4.062 5 N -0.496 5.496 6 C 0.178 3.822 7 C 0.161 3.839 8 N -0.692 5.692 9 C 0.067 3.933 10 C -0.115 4.115 11 C 0.122 3.878 12 N -0.713 5.713 13 C 0.534 3.466 14 O -0.564 6.564 15 C -0.112 4.112 16 S -0.176 6.176 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.237 1.237 25 O -0.213 6.213 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.202 0.798 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.349 0.651 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.417 0.583 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.964 -19.499 15.674 39.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 C -0.094 4.094 4 C -0.200 4.200 5 N -0.225 5.225 6 C -0.029 4.029 7 C 0.032 3.968 8 N -0.325 5.325 9 C -0.062 4.062 10 C -0.153 4.153 11 C -0.002 4.002 12 N -0.366 5.366 13 C 0.319 3.681 14 O -0.443 6.443 15 C -0.263 4.263 16 S 0.050 5.950 17 C -0.678 4.678 18 H 0.080 0.920 19 C -0.159 4.159 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.161 1.161 25 O -0.100 6.100 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.219 0.781 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.167 0.833 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.254 0.746 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -31.493 -17.126 15.725 39.146 hybrid contribution 0.906 -1.535 -0.776 1.944 sum -30.587 -18.661 14.949 38.824 Atomic orbital electron populations 1.21796 0.93077 1.03643 1.02080 1.20287 0.96833 0.84461 1.05900 1.24183 1.04169 0.97174 0.83924 1.23529 1.05138 0.89591 1.01728 1.70417 1.18139 1.23821 1.10153 1.26458 0.99407 0.86536 0.90466 1.20297 0.89123 0.91162 0.96246 1.60359 1.13728 1.07135 1.51253 1.21827 0.94498 0.94492 0.95353 1.21600 0.96005 0.97712 1.00018 1.21326 0.79621 0.99560 0.99670 1.45745 1.10469 1.28885 1.51546 1.19952 0.88339 0.81820 0.77992 1.90688 1.67792 1.34152 1.51637 1.23284 0.95494 1.03167 1.04383 1.84700 1.07855 1.37074 1.65369 1.22476 0.92804 1.15237 1.37272 0.91968 1.25555 0.94399 1.00238 0.95669 1.70015 1.04905 1.40040 1.40587 0.85869 0.81060 0.79908 0.79551 1.18703 1.18298 1.16052 1.84387 1.64213 1.23874 1.37497 0.89467 0.92147 0.93504 0.89215 0.86248 0.78105 0.90207 0.86369 0.83279 0.93133 0.89871 0.90077 0.89975 0.91936 0.92079 0.74598 0.86861 0.86754 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.89 71.98 0.71 0.02 16 2 C -0.04 -0.21 6.49 29.85 0.19 -0.02 16 3 C -0.04 -0.56 6.64 24.79 0.16 -0.39 16 4 C -0.06 -0.96 11.80 83.40 0.98 0.02 16 5 N -0.50 -10.19 11.29 -303.82 -3.43 -13.62 16 6 C 0.18 3.08 7.86 88.34 0.69 3.77 16 7 C 0.16 1.89 6.31 85.55 0.54 2.43 16 8 N -0.69 -8.23 6.49 -517.91 -3.36 -11.59 16 9 C 0.07 0.69 5.68 86.30 0.49 1.18 16 10 C -0.12 -1.32 5.59 30.59 0.17 -1.15 16 11 C 0.12 2.23 5.67 86.38 0.49 2.72 16 12 N -0.71 -15.85 5.56 -463.06 -2.57 -18.43 16 13 C 0.53 17.98 7.85 87.66 0.69 18.67 16 14 O -0.56 -23.85 15.86 -3.03 -0.05 -23.90 16 15 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 16 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 17 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 18 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 19 C 0.05 2.75 5.50 84.86 0.47 3.22 16 20 N -0.92 -55.97 13.97 21.65 0.30 -55.66 16 21 Si 0.91 45.03 27.74 68.60 1.90 46.93 16 22 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 25 O -0.21 -3.56 10.78 -3.76 -0.04 -3.60 16 26 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.12 0.18 8.14 -2.39 -0.02 0.17 16 31 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.35 3.75 8.72 -89.70 -0.78 2.97 16 35 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.42 6.62 8.47 -92.70 -0.79 5.83 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 44 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -79.54 390.39 -2.17 -81.71 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -0.59 Total: 11.65 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.72 Total: -3.53 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -9.06 Total: -99.30 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.09 Total: -27.50 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.93 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -79.54 -2.17 -81.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.078 kcal (2) G-P(sol) polarization free energy of solvation -79.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds