Wall clock time and date at job start Tue Mar 31 2020 15:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.61611 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47127 * 90.00516 * 5 4 3 7 7 C 1.46896 * 110.99972 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47099 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47195 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46742 * 180.02562 * 9 8 7 11 11 C 1.34783 * 119.99539 * 179.97438 * 10 9 8 12 12 O 1.21278 * 120.00122 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00011 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.47351 * 179.97438 * 13 11 10 15 15 C 1.76197 * 100.00240 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99888 * 359.97438 * 15 14 13 17 17 C 1.38794 * 120.00463 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99751 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00499 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46929 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47328 * 120.00232 * 19 17 15 22 22 H 1.48501 * 109.47367 * 240.00563 * 19 17 15 23 23 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 24 24 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 25 25 C 1.50706 * 126.43925 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 27 27 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 28 28 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 29 29 H 1.09004 * 109.46862 * 210.00042 * 5 4 3 30 30 H 1.08999 * 109.47505 * 330.00155 * 5 4 3 31 31 H 1.00904 * 110.99930 * 303.95262 * 6 5 4 32 32 H 1.08994 * 109.47327 * 299.99950 * 7 6 5 33 33 H 1.09001 * 109.46869 * 59.99969 * 7 6 5 34 34 H 1.09003 * 109.46958 * 300.00341 * 8 7 6 35 35 H 1.08997 * 109.47047 * 59.99866 * 8 7 6 36 36 H 1.09005 * 109.46775 * 299.99764 * 9 8 7 37 37 H 1.08997 * 109.47414 * 59.99868 * 9 8 7 38 38 H 0.96994 * 120.00405 * 359.97438 * 10 9 8 39 39 H 1.09003 * 109.46678 * 299.99992 * 13 11 10 40 40 H 1.08997 * 109.47308 * 59.99505 * 13 11 10 41 41 H 0.97000 * 120.00177 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.46953 * 90.00182 * 25 24 2 43 43 H 1.09000 * 109.47318 * 209.99779 * 25 24 2 44 44 H 1.09000 * 109.47161 * 330.00410 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0002 6 7 5.1392 1.8951 1.3851 7 6 6.3135 2.7767 1.4239 8 6 6.6897 3.0613 2.8795 9 6 7.9124 3.9800 2.9199 10 7 8.2729 4.2519 4.3136 11 6 9.3269 5.0435 4.5949 12 8 9.9772 5.5302 3.6943 13 6 9.6982 5.3228 6.0285 14 16 11.1455 6.4086 6.0764 15 6 11.3526 6.5658 7.8191 16 1 10.6756 6.0593 8.4912 17 6 12.3855 7.3406 8.3282 18 7 13.2102 7.9583 7.5091 19 14 12.6054 7.5067 10.1757 20 1 11.5560 6.7197 10.8718 21 1 13.9450 6.9960 10.5627 22 1 12.4902 8.9362 10.5614 23 8 3.5735 -0.6445 0.0067 24 6 2.2998 -1.0844 -0.0005 25 6 1.8494 -2.5226 -0.0006 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 5.5731 1.1064 -0.5131 30 1 4.5040 2.5295 -0.5143 31 1 4.3695 2.2945 1.9010 32 1 7.1494 2.2909 0.9206 33 1 6.0807 3.7143 0.9192 34 1 5.8536 3.5472 3.3825 35 1 6.9223 2.1238 3.3846 36 1 8.7486 3.4943 2.4168 37 1 7.6794 4.9174 2.4150 38 1 7.7531 3.8624 5.0339 39 1 8.8623 5.8084 6.5322 40 1 9.9311 4.3850 6.5328 41 1 13.9318 8.5001 7.8648 42 1 1.7405 -2.8691 -1.0283 43 1 2.5903 -3.1354 0.5128 44 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154802534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:52 Heat of formation + Delta-G solvation = -29.928708 kcal Electronic energy + Delta-G solvation = -23241.906228 eV Core-core repulsion = 19514.677648 eV Total energy + Delta-G solvation = -3727.228580 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.75447 -39.18756 -37.42819 -35.59588 -35.08905 -33.52261 -32.42195 -31.75395 -29.74481 -29.31233 -27.73116 -25.52115 -24.99175 -23.73377 -22.09693 -21.84117 -21.01051 -20.27030 -17.83178 -17.30710 -17.23813 -16.41931 -16.23133 -16.06161 -15.51934 -15.24475 -14.85111 -14.79471 -14.63701 -14.18484 -13.96300 -13.79321 -13.75632 -13.54842 -13.12886 -12.93146 -12.85109 -12.82842 -12.60277 -12.41827 -12.06471 -11.86366 -11.74544 -11.35269 -11.15860 -11.06129 -11.01052 -10.92625 -10.74829 -9.79834 -9.40081 -9.15293 -9.07069 -8.91733 -8.86817 -8.22162 -6.49057 -6.21057 -3.91441 0.96685 2.12846 2.23020 3.02832 3.11507 3.22219 3.28110 3.32271 3.41374 3.68630 3.89244 4.21159 4.23055 4.35529 4.52001 4.63615 4.70459 4.80223 4.80603 4.85936 4.92482 5.04614 5.11565 5.14262 5.17916 5.21268 5.22526 5.31340 5.35624 5.48899 5.56988 5.65337 5.65776 5.85174 5.89853 5.92957 5.96688 6.15482 6.31203 6.63209 6.72687 7.32568 7.60716 7.72191 8.36262 8.62753 9.24478 10.86488 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.034970 B = 0.001357 C = 0.001334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.484231 B =20634.089326 C =20979.767409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.018 4.018 3 N -0.476 5.476 4 C 0.196 3.804 5 C 0.156 3.844 6 N -0.687 5.687 7 C 0.063 3.937 8 C -0.129 4.129 9 C 0.123 3.877 10 N -0.739 5.739 11 C 0.531 3.469 12 O -0.518 6.518 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 O -0.191 6.191 24 C -0.049 4.049 25 C -0.068 4.068 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.350 0.650 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.752 -20.072 -15.939 36.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.138 4.138 3 N -0.206 5.206 4 C -0.011 4.011 5 C 0.026 3.974 6 N -0.320 5.320 7 C -0.066 4.066 8 C -0.167 4.167 9 C -0.002 4.002 10 N -0.394 5.394 11 C 0.317 3.683 12 O -0.393 6.393 13 C -0.304 4.304 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 O -0.078 6.078 24 C -0.102 4.102 25 C -0.125 4.125 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.269 -19.111 -17.417 35.463 hybrid contribution -1.047 -0.488 2.335 2.605 sum -25.316 -19.599 -15.083 35.391 Atomic orbital electron populations 1.20114 0.86442 1.03333 1.02917 1.21527 0.97970 0.87649 1.06643 1.70339 1.00532 1.31605 1.18151 1.25927 0.94945 0.79260 1.00984 1.20202 0.90334 0.94952 0.91903 1.60423 1.09664 1.50325 1.11591 1.21882 0.92914 0.94725 0.97072 1.21735 0.97849 1.00529 0.96600 1.21169 0.96447 0.98924 0.83651 1.45978 1.32898 1.52548 1.07984 1.20312 0.79249 0.77452 0.91266 1.90700 1.50977 1.49543 1.48033 1.23531 1.06295 1.05721 0.94870 1.85395 1.29619 1.58948 1.09501 1.22915 1.18038 1.35907 0.91468 0.90868 1.24990 0.94803 0.94693 0.99093 1.70029 1.16033 1.29572 1.34675 0.86114 0.78198 0.78061 0.83105 1.19620 1.20569 1.20569 1.84405 1.29972 1.23949 1.69440 1.23250 0.80858 0.98336 1.07760 1.20283 1.02056 0.86373 1.03758 0.90676 0.90556 0.90738 0.87836 0.90397 0.83163 0.89932 0.94024 0.91219 0.90166 0.91469 0.91664 0.76781 0.89223 0.89196 0.92242 0.89791 0.90141 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.05 36.00 0.36 -0.02 16 2 C -0.02 -0.16 7.11 -82.81 -0.59 -0.75 16 3 N -0.48 -5.00 11.29 -7.36 -0.08 -5.08 16 4 C 0.20 1.86 7.86 -12.94 -0.10 1.76 16 5 C 0.16 1.08 6.31 -4.97 -0.03 1.04 16 6 N -0.69 -5.00 6.49 -115.06 -0.75 -5.74 16 7 C 0.06 0.42 5.69 -3.82 -0.02 0.40 16 8 C -0.13 -0.98 5.59 -26.73 -0.15 -1.13 16 9 C 0.12 1.35 5.67 -4.04 -0.02 1.32 16 10 N -0.74 -9.73 5.56 -60.29 -0.33 -10.06 16 11 C 0.53 9.95 7.85 -10.98 -0.09 9.87 16 12 O -0.52 -11.85 15.86 5.56 0.09 -11.77 16 13 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 14 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 15 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 16 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 19 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 O -0.19 -1.90 10.78 5.36 0.06 -1.84 16 24 C -0.05 -0.39 7.39 -35.68 -0.26 -0.66 16 25 C -0.07 -0.26 10.04 36.01 0.36 0.10 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.23 7.79 -51.93 -0.40 -0.17 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.35 2.56 8.72 -39.29 -0.34 2.22 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 0.19 7.80 -51.93 -0.40 -0.21 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -37.11 392.22 -8.69 -45.80 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.96 Total: -0.28 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.12 Total: -3.96 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.43 Total: -46.42 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.15 Total: -13.61 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.11 -8.69 -45.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.871 kcal (2) G-P(sol) polarization free energy of solvation -37.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds