Wall clock time and date at job start Tue Mar 31 2020 15:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.61611 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47127 * 90.00516 * 5 4 3 7 7 C 1.46896 * 110.99972 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47099 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47195 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46742 * 180.02562 * 9 8 7 11 11 C 1.34783 * 119.99539 * 179.97438 * 10 9 8 12 12 O 1.21278 * 120.00122 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00011 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.47351 * 179.97438 * 13 11 10 15 15 C 1.76197 * 100.00240 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99888 * 359.97438 * 15 14 13 17 17 C 1.38794 * 120.00463 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99751 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00499 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46929 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47328 * 120.00232 * 19 17 15 22 22 H 1.48501 * 109.47367 * 240.00563 * 19 17 15 23 23 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 24 24 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 25 25 C 1.50706 * 126.43925 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 27 27 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 28 28 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 29 29 H 1.09004 * 109.46862 * 210.00042 * 5 4 3 30 30 H 1.08999 * 109.47505 * 330.00155 * 5 4 3 31 31 H 1.00904 * 110.99930 * 303.95262 * 6 5 4 32 32 H 1.08994 * 109.47327 * 299.99950 * 7 6 5 33 33 H 1.09001 * 109.46869 * 59.99969 * 7 6 5 34 34 H 1.09003 * 109.46958 * 300.00341 * 8 7 6 35 35 H 1.08997 * 109.47047 * 59.99866 * 8 7 6 36 36 H 1.09005 * 109.46775 * 299.99764 * 9 8 7 37 37 H 1.08997 * 109.47414 * 59.99868 * 9 8 7 38 38 H 0.96994 * 120.00405 * 359.97438 * 10 9 8 39 39 H 1.09003 * 109.46678 * 299.99992 * 13 11 10 40 40 H 1.08997 * 109.47308 * 59.99505 * 13 11 10 41 41 H 0.97000 * 120.00177 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.46953 * 90.00182 * 25 24 2 43 43 H 1.09000 * 109.47318 * 209.99779 * 25 24 2 44 44 H 1.09000 * 109.47161 * 330.00410 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0002 6 7 5.1392 1.8951 1.3851 7 6 6.3135 2.7767 1.4239 8 6 6.6897 3.0613 2.8795 9 6 7.9124 3.9800 2.9199 10 7 8.2729 4.2519 4.3136 11 6 9.3269 5.0435 4.5949 12 8 9.9772 5.5302 3.6943 13 6 9.6982 5.3228 6.0285 14 16 11.1455 6.4086 6.0764 15 6 11.3526 6.5658 7.8191 16 1 10.6756 6.0593 8.4912 17 6 12.3855 7.3406 8.3282 18 7 13.2102 7.9583 7.5091 19 14 12.6054 7.5067 10.1757 20 1 11.5560 6.7197 10.8718 21 1 13.9450 6.9960 10.5627 22 1 12.4902 8.9362 10.5614 23 8 3.5735 -0.6445 0.0067 24 6 2.2998 -1.0844 -0.0005 25 6 1.8494 -2.5226 -0.0006 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 5.5731 1.1064 -0.5131 30 1 4.5040 2.5295 -0.5143 31 1 4.3695 2.2945 1.9010 32 1 7.1494 2.2909 0.9206 33 1 6.0807 3.7143 0.9192 34 1 5.8536 3.5472 3.3825 35 1 6.9223 2.1238 3.3846 36 1 8.7486 3.4943 2.4168 37 1 7.6794 4.9174 2.4150 38 1 7.7531 3.8624 5.0339 39 1 8.8623 5.8084 6.5322 40 1 9.9311 4.3850 6.5328 41 1 13.9318 8.5001 7.8648 42 1 1.7405 -2.8691 -1.0283 43 1 2.5903 -3.1354 0.5128 44 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154802534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:52 Heat of formation + Delta-G solvation = -60.063963 kcal Electronic energy + Delta-G solvation = -23243.212991 eV Core-core repulsion = 19514.677648 eV Total energy + Delta-G solvation = -3728.535343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.37577 -40.60172 -38.09459 -36.24163 -36.11626 -34.58363 -34.16200 -32.67651 -30.73505 -30.04284 -28.51336 -27.65241 -25.67392 -24.41976 -22.73510 -22.54789 -21.72930 -21.54144 -19.81597 -17.95541 -17.94312 -17.64208 -17.27873 -17.07813 -16.87769 -16.50741 -16.04910 -15.80221 -15.47425 -15.40286 -14.87782 -14.66161 -14.45768 -14.24892 -14.19093 -13.82795 -13.81159 -13.42117 -13.22655 -13.18489 -13.15688 -12.91863 -12.90631 -12.83583 -12.54805 -12.46554 -11.99818 -11.86975 -11.70420 -11.57198 -11.15578 -10.96152 -10.26958 -10.10415 -9.69096 -9.46611 -8.66449 -8.34580 -6.12630 0.36167 1.27656 1.41808 1.47288 1.52134 1.59207 1.62119 1.67640 2.26089 2.30417 2.86660 2.99796 3.24640 3.33498 3.75148 3.86220 3.93899 3.98772 4.07573 4.19289 4.22810 4.27195 4.31229 4.44681 4.52080 4.55433 4.61009 4.63725 4.69072 4.75051 4.77503 4.81516 4.97599 5.08262 5.14844 5.16104 5.18388 5.40894 5.42503 5.46648 5.77344 6.17131 6.20398 6.52261 6.69910 7.06973 7.25711 8.75005 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.034970 B = 0.001357 C = 0.001334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.484231 B =20634.089326 C =20979.767409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.042 4.042 3 N -0.503 5.503 4 C 0.184 3.816 5 C 0.158 3.842 6 N -0.691 5.691 7 C 0.067 3.933 8 C -0.114 4.114 9 C 0.122 3.878 10 N -0.713 5.713 11 C 0.532 3.468 12 O -0.567 6.567 13 C -0.130 4.130 14 S -0.153 6.153 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.014 3.986 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.274 1.274 23 O -0.208 6.208 24 C -0.055 4.055 25 C -0.067 4.067 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.349 0.651 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.417 0.583 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.786 -21.873 -14.855 38.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.162 4.162 3 N -0.234 5.234 4 C -0.023 4.023 5 C 0.029 3.971 6 N -0.324 5.324 7 C -0.062 4.062 8 C -0.152 4.152 9 C -0.002 4.002 10 N -0.367 5.367 11 C 0.318 3.682 12 O -0.446 6.446 13 C -0.281 4.281 14 S 0.074 5.926 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.199 1.199 23 O -0.095 6.095 24 C -0.108 4.108 25 C -0.124 4.124 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.254 0.746 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.364 -20.959 -16.331 37.430 hybrid contribution -0.533 -0.020 1.908 1.981 sum -26.897 -20.979 -14.423 37.035 Atomic orbital electron populations 1.20217 0.84433 1.04258 1.03640 1.22108 0.99446 0.87500 1.07097 1.70328 1.01314 1.32790 1.18965 1.26370 0.95403 0.79471 1.01081 1.20293 0.89984 0.95002 0.91844 1.60399 1.09730 1.50417 1.11875 1.21831 0.92894 0.95036 0.96466 1.21590 0.96391 0.99770 0.97443 1.21311 0.97681 0.99384 0.81853 1.45745 1.30874 1.50285 1.09831 1.20071 0.80173 0.77985 0.90003 1.90689 1.53056 1.51911 1.48909 1.23380 1.03218 1.04804 0.96736 1.85573 1.34585 1.61888 1.10548 1.23247 1.18504 1.36160 0.91497 0.89894 1.26122 0.94223 0.94006 1.04745 1.70190 1.16830 1.30501 1.37299 0.84899 0.78562 0.78346 0.76094 1.18028 1.19931 1.19926 1.84404 1.31119 1.24258 1.69740 1.24042 0.80145 1.00008 1.06590 1.20503 1.02961 0.83818 1.05085 0.89965 0.91172 0.88284 0.86741 0.89607 0.83275 0.89611 0.93437 0.90138 0.89820 0.92168 0.92265 0.74627 0.87177 0.87181 0.91989 0.88242 0.89834 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.05 71.24 0.72 0.07 16 2 C -0.04 -0.71 7.11 41.26 0.29 -0.42 16 3 N -0.50 -10.51 11.29 -291.98 -3.30 -13.81 16 4 C 0.18 3.43 7.86 88.34 0.69 4.13 16 5 C 0.16 2.06 6.31 85.56 0.54 2.60 16 6 N -0.69 -9.12 6.49 -517.92 -3.36 -12.49 16 7 C 0.07 0.78 5.69 86.31 0.49 1.27 16 8 C -0.11 -1.47 5.59 30.59 0.17 -1.30 16 9 C 0.12 2.49 5.67 86.38 0.49 2.98 16 10 N -0.71 -17.39 5.56 -463.06 -2.57 -19.96 16 11 C 0.53 19.55 7.85 87.66 0.69 20.24 16 12 O -0.57 -26.36 15.86 -3.02 -0.05 -26.41 16 13 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 14 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 15 C -0.55 -31.31 9.50 67.95 0.65 -30.67 16 16 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 17 C 0.01 0.78 5.49 84.86 0.47 1.25 16 18 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 19 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 O -0.21 -4.06 10.78 -3.72 -0.04 -4.10 16 24 C -0.05 -0.84 7.39 24.79 0.18 -0.66 16 25 C -0.07 -0.39 10.04 71.24 0.72 0.33 16 26 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.40 7.79 -2.38 -0.02 0.38 16 29 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.35 4.68 8.72 -89.69 -0.78 3.90 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.42 7.25 8.47 -92.71 -0.79 6.46 16 39 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 40 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.10 0.28 8.14 -2.39 -0.02 0.27 16 43 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.11 0.17 7.80 -2.39 -0.02 0.15 16 Total: -1.00 -83.05 392.22 -2.19 -85.24 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -0.55 Total: 16.34 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 6.53 Total: -4.89 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -8.95 Total: -102.18 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.09 Total: -30.51 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -83.05 -2.19 -85.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.176 kcal (2) G-P(sol) polarization free energy of solvation -83.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds